RNA–Protein interactions for RNA: ENST00000418386.2

LTA-213, Transcript of lymphotoxin alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LTA, Length 1,422 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTA-213ENST00000418386 NISCHQ9Y2I1 1504 aa31.62■■■□□ 2.65
LTA-213ENST00000418386 CCDC180Q9P1Z9 1646 aa27.87■■■□□ 2.05
LTA-213ENST00000418386 ZCCHC6Q5VYS8 1495 aaKnown RBP26.51■■□□□ 1.83
LTA-213ENST00000418386 ABCC9O60706 1549 aa26.51■■□□□ 1.83
LTA-213ENST00000418386 DCAF1Q9Y4B6 1507 aa26.23■■□□□ 1.79
LTA-213ENST00000418386 MYO15BQ96JP2 1530 aa26.1■■□□□ 1.77
LTA-213ENST00000418386 NACADO15069 1562 aa26■■□□□ 1.75
LTA-213ENST00000418386 DCAF8L2P0C7V8 631 aa25.98■■□□□ 1.75
LTA-213ENST00000418386 RB1CC1Q8TDY2 1594 aa25.86■■□□□ 1.73
LTA-213ENST00000418386 SCRIBQ14160 1630 aa25.43■■□□□ 1.66
LTA-213ENST00000418386 UNC13AQ9UPW8 1703 aa25.32■■□□□ 1.64
LTA-213ENST00000418386 SHROOM4Q9ULL8 1493 aa25.31■■□□□ 1.64
LTA-213ENST00000418386 BICRAQ9NZM4 1560 aa25.07■■□□□ 1.6
LTA-213ENST00000418386 PABPN1Q86U42 306 aaKnown RBP eCLIP24.84■■□□□ 1.57
LTA-213ENST00000418386 CECR2Q9BXF3 1484 aa24.53■■□□□ 1.52
LTA-213ENST00000418386 BAZ1AQ9NRL2 1556 aaPredicted RBP24.47■■□□□ 1.51
LTA-213ENST00000418386 SMARCA4P51532 1647 aa24.41■■□□□ 1.5
LTA-213ENST00000418386 MROH2BQ7Z745 1585 aa24.37■■□□□ 1.49
LTA-213ENST00000418386 EIF4G1Q04637 1599 aaKnown RBP24.33■■□□□ 1.49
LTA-213ENST00000418386 RSF1Q96T23 1441 aaPredicted RBP24.33■■□□□ 1.49
LTA-213ENST00000418386 DNAJC5BQ9UF47 199 aa24.19■■□□□ 1.46
LTA-213ENST00000418386 PEG3Q9GZU2 1588 aa24.18■■□□□ 1.46
LTA-213ENST00000418386 WIZO95785 1651 aa24.14■■□□□ 1.46
LTA-213ENST00000418386 SUPT5HO00267 1087 aaKnown RBP24.13■■□□□ 1.45
LTA-213ENST00000418386 SMARCA2P51531 1590 aa24.11■■□□□ 1.45
LTA-213ENST00000418386 ATAD2BQ9ULI0 1458 aa24.08■■□□□ 1.44
LTA-213ENST00000418386 CC2D2AQ9P2K1 1620 aa24.05■■□□□ 1.44
LTA-213ENST00000418386 NCAPD3P42695 1498 aa23.96■■□□□ 1.43
LTA-213ENST00000418386 TOP2AP11388 1531 aaKnown RBP23.95■■□□□ 1.42
LTA-213ENST00000418386 HMGXB3Q12766 1538 aa23.95■■□□□ 1.42
LTA-213ENST00000418386 BAZ1BQ9UIG0 1483 aaKnown RBP23.91■■□□□ 1.42
LTA-213ENST00000418386 CCDC88BA6NC98 1476 aa23.63■■□□□ 1.37
LTA-213ENST00000418386 CFTRP13569 1480 aa23.31■■□□□ 1.32
LTA-213ENST00000418386 CADPSQ9ULU8 1353 aa23.28■■□□□ 1.32
LTA-213ENST00000418386 PRDM2Q13029 1718 aa23.27■■□□□ 1.31
LTA-213ENST00000418386 LAMC3Q9Y6N6 1575 aa23.24■■□□□ 1.31
LTA-213ENST00000418386 NESP48681 1621 aa23.16■■□□□ 1.3
LTA-213ENST00000418386 FANCD2Q9BXW9 1451 aa23.02■■□□□ 1.28
LTA-213ENST00000418386 PDS5BQ9NTI5 1447 aa23.02■■□□□ 1.28
LTA-213ENST00000418386 ABCC8Q09428 1581 aa22.98■■□□□ 1.27
LTA-213ENST00000418386 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
LTA-213ENST00000418386 KIF21AQ7Z4S6 1674 aa22.95■■□□□ 1.26
LTA-213ENST00000418386 CEP164Q9UPV0 1460 aa22.94■■□□□ 1.26
LTA-213ENST00000418386 WRNQ14191 1432 aaPredicted RBP eCLIP22.92■■□□□ 1.26
LTA-213ENST00000418386 SYNJ1O43426 1573 aa22.85■■□□□ 1.25
LTA-213ENST00000418386 BIVM-ERCC5R4GMW8 1640 aa22.84■■□□□ 1.25
LTA-213ENST00000418386 CUX1P39880 1505 aa22.84■■□□□ 1.25
LTA-213ENST00000418386 TOP2BQ02880 1626 aa22.84■■□□□ 1.25
LTA-213ENST00000418386 DNMBPQ6XZF7 1577 aa22.8■■□□□ 1.24
LTA-213ENST00000418386 ERCC6Q03468 1493 aa22.8■■□□□ 1.24
LTA-213ENST00000418386 TRIM41Q8WV44 630 aa22.77■■□□□ 1.24
LTA-213ENST00000418386 MRC2Q9UBG0 1479 aa22.77■■□□□ 1.24
LTA-213ENST00000418386 URB2Q14146 1524 aaKnown RBP22.76■■□□□ 1.23
LTA-213ENST00000418386 TOPBP1Q92547 1522 aa22.75■■□□□ 1.23
LTA-213ENST00000418386 THOC2Q8NI27 1593 aaKnown RBP22.72■■□□□ 1.23
LTA-213ENST00000418386 WDR62O43379 1518 aa22.7■■□□□ 1.22
LTA-213ENST00000418386 FGD5Q6ZNL6 1462 aa22.64■■□□□ 1.21
LTA-213ENST00000418386 POLA1P09884 1462 aaPredicted RBP22.6■■□□□ 1.21
LTA-213ENST00000418386 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
LTA-213ENST00000418386 CUX2O14529 1486 aa22.48■■□□□ 1.19
LTA-213ENST00000418386 ABCA10Q8WWZ4 1543 aa22.47■■□□□ 1.19
LTA-213ENST00000418386 SOGA1O94964 1423 aa22.47■■□□□ 1.19
LTA-213ENST00000418386 TARBP1Q13395 1621 aaKnown RBP22.46■■□□□ 1.19
LTA-213ENST00000418386 RAD54L2Q9Y4B4 1467 aa22.46■■□□□ 1.19
LTA-213ENST00000418386 EEA1Q15075 1411 aa22.44■■□□□ 1.18
LTA-213ENST00000418386 IFT140Q96RY7 1462 aa22.43■■□□□ 1.18
LTA-213ENST00000418386 KIF27Q86VH2 1401 aa22.38■■□□□ 1.17
LTA-213ENST00000418386 RUSC2Q8N2Y8 1516 aa22.37■■□□□ 1.17
LTA-213ENST00000418386 ABCA5Q8WWZ7 1642 aa22.35■■□□□ 1.17
LTA-213ENST00000418386 FAM9AQ8IZU1 332 aaPredicted RBP22.26■■□□□ 1.15
LTA-213ENST00000418386 GAPVD1Q14C86 1478 aa22.26■■□□□ 1.15
LTA-213ENST00000418386 ZNF608Q9ULD9 1512 aaPredicted RBP22.25■■□□□ 1.15
LTA-213ENST00000418386 EIF4G3O43432 1585 aaKnown RBP22.24■■□□□ 1.15
LTA-213ENST00000418386 TDRD9Q8NDG6 1382 aaKnown RBP22.24■■□□□ 1.15
LTA-213ENST00000418386 CSRNP3Q8WYN3 585 aa22.23■■□□□ 1.15
LTA-213ENST00000418386 ERICH3Q5RHP9 1530 aa22.22■■□□□ 1.15
LTA-213ENST00000418386 PBRM1Q86U86 1689 aa22.22■■□□□ 1.15
LTA-213ENST00000418386 AQRO60306 1485 aaKnown RBP eCLIP22.19■■□□□ 1.14
LTA-213ENST00000418386 IGF1RP08069 1367 aa22.19■■□□□ 1.14
LTA-213ENST00000418386 KIF21BO75037 1637 aa22.18■■□□□ 1.14
LTA-213ENST00000418386 CUL7Q14999 1698 aa22.17■■□□□ 1.14
LTA-213ENST00000418386 GRIN2BQ13224 1484 aa22.17■■□□□ 1.14
LTA-213ENST00000418386 PRXQ9BXM0 1461 aa22.15■■□□□ 1.14
LTA-213ENST00000418386 ADAMTS12P58397 1594 aa22.08■■□□□ 1.13
LTA-213ENST00000418386 CARMIL1Q5VZK9 1371 aa22.08■■□□□ 1.12
LTA-213ENST00000418386 GOLGA3Q08378 1498 aa22.07■■□□□ 1.12
LTA-213ENST00000418386 MAGI1Q96QZ7 1491 aaPredicted RBP22.06■■□□□ 1.12
LTA-213ENST00000418386 SNAPC4Q5SXM2 1469 aa22.04■■□□□ 1.12
LTA-213ENST00000418386 RAPGEF2Q9Y4G8 1499 aa22.04■■□□□ 1.12
LTA-213ENST00000418386 FHAD1B1AJZ9 1412 aa22.02■■□□□ 1.12
LTA-213ENST00000418386 LOC105371045A0A1W2PR82 267 aa21.97■■□□□ 1.11
LTA-213ENST00000418386 SYNJ2O15056 1496 aa21.94■■□□□ 1.1
LTA-213ENST00000418386 DNAJC5Q9H3Z4 198 aa21.93■■□□□ 1.1
LTA-213ENST00000418386 TNIKQ9UKE5 1360 aa21.9■■□□□ 1.1
LTA-213ENST00000418386 GRIN2AQ12879 1464 aa21.89■■□□□ 1.09
LTA-213ENST00000418386 EHMT2Q96KQ7 1210 aa21.89■■□□□ 1.09
LTA-213ENST00000418386 UBTFP17480 764 aaKnown RBP21.85■■□□□ 1.09
LTA-213ENST00000418386 CTTNBP2Q8WZ74 1663 aa21.85■■□□□ 1.09
LTA-213ENST00000418386 CHD1O14646 1710 aa21.84■■□□□ 1.09
LTA-213ENST00000418386 CHMP7Q8WUX9 453 aaPredicted RBP21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms