RNA–Protein interactions for RNA: ENST00000418375.1

TMEM248-203, Transcript of transmembrane protein 248, humanhuman

TSL 4

Gene TMEM248, Length 545 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-203ENST00000418375 NISCHQ9Y2I1 1504 aa32.12■■■□□ 2.73
TMEM248-203ENST00000418375 CCDC180Q9P1Z9 1646 aa28.71■■■□□ 2.19
TMEM248-203ENST00000418375 ABCC9O60706 1549 aa28.64■■■□□ 2.17
TMEM248-203ENST00000418375 RB1CC1Q8TDY2 1594 aa27.31■■□□□ 1.96
TMEM248-203ENST00000418375 NACADO15069 1562 aa27.15■■□□□ 1.94
TMEM248-203ENST00000418375 DCAF8L2P0C7V8 631 aa27.12■■□□□ 1.93
TMEM248-203ENST00000418375 MYO15BQ96JP2 1530 aa26.83■■□□□ 1.89
TMEM248-203ENST00000418375 DNAJC5BQ9UF47 199 aa26.74■■□□□ 1.87
TMEM248-203ENST00000418375 PABPN1Q86U42 306 aaKnown RBP eCLIP26.71■■□□□ 1.87
TMEM248-203ENST00000418375 ZCCHC6Q5VYS8 1495 aaKnown RBP26.69■■□□□ 1.86
TMEM248-203ENST00000418375 UNC13AQ9UPW8 1703 aa26.57■■□□□ 1.84
TMEM248-203ENST00000418375 DCAF1Q9Y4B6 1507 aa26.54■■□□□ 1.84
TMEM248-203ENST00000418375 BICRAQ9NZM4 1560 aa26.47■■□□□ 1.83
TMEM248-203ENST00000418375 SCRIBQ14160 1630 aa26.2■■□□□ 1.78
TMEM248-203ENST00000418375 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
TMEM248-203ENST00000418375 CC2D2AQ9P2K1 1620 aa25.84■■□□□ 1.73
TMEM248-203ENST00000418375 EIF4G1Q04637 1599 aaKnown RBP25.83■■□□□ 1.73
TMEM248-203ENST00000418375 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
TMEM248-203ENST00000418375 NCAPD3P42695 1498 aa25.09■■□□□ 1.61
TMEM248-203ENST00000418375 ATAD2BQ9ULI0 1458 aa25.02■■□□□ 1.6
TMEM248-203ENST00000418375 SMARCA4P51532 1647 aa25■■□□□ 1.59
TMEM248-203ENST00000418375 SMARCA2P51531 1590 aa24.96■■□□□ 1.59
TMEM248-203ENST00000418375 BAZ1AQ9NRL2 1556 aaPredicted RBP24.93■■□□□ 1.58
TMEM248-203ENST00000418375 HMGXB3Q12766 1538 aa24.89■■□□□ 1.57
TMEM248-203ENST00000418375 BAZ1BQ9UIG0 1483 aaKnown RBP24.8■■□□□ 1.56
TMEM248-203ENST00000418375 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
TMEM248-203ENST00000418375 PEG3Q9GZU2 1588 aa24.76■■□□□ 1.55
TMEM248-203ENST00000418375 MROH2BQ7Z745 1585 aa24.75■■□□□ 1.55
TMEM248-203ENST00000418375 ERCC6Q03468 1493 aa24.73■■□□□ 1.55
TMEM248-203ENST00000418375 NESP48681 1621 aa24.63■■□□□ 1.53
TMEM248-203ENST00000418375 CUX2O14529 1486 aa24.62■■□□□ 1.53
TMEM248-203ENST00000418375 LAMC3Q9Y6N6 1575 aa24.47■■□□□ 1.51
TMEM248-203ENST00000418375 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
TMEM248-203ENST00000418375 RSF1Q96T23 1441 aaPredicted RBP24.46■■□□□ 1.51
TMEM248-203ENST00000418375 WIZO95785 1651 aa24.42■■□□□ 1.5
TMEM248-203ENST00000418375 PDS5BQ9NTI5 1447 aa24.37■■□□□ 1.49
TMEM248-203ENST00000418375 CADPSQ9ULU8 1353 aa24.35■■□□□ 1.49
TMEM248-203ENST00000418375 THOC2Q8NI27 1593 aaKnown RBP24.31■■□□□ 1.48
TMEM248-203ENST00000418375 KIF21AQ7Z4S6 1674 aa24.25■■□□□ 1.47
TMEM248-203ENST00000418375 TOP2AP11388 1531 aaKnown RBP24.17■■□□□ 1.46
TMEM248-203ENST00000418375 MRC2Q9UBG0 1479 aa24.13■■□□□ 1.45
TMEM248-203ENST00000418375 CFTRP13569 1480 aa24.08■■□□□ 1.45
TMEM248-203ENST00000418375 CEP164Q9UPV0 1460 aa24.07■■□□□ 1.44
TMEM248-203ENST00000418375 FANCD2Q9BXW9 1451 aa24.06■■□□□ 1.44
TMEM248-203ENST00000418375 WDR62O43379 1518 aa24.05■■□□□ 1.44
TMEM248-203ENST00000418375 SUPT5HO00267 1087 aaKnown RBP23.97■■□□□ 1.43
TMEM248-203ENST00000418375 CCDC88BA6NC98 1476 aa23.9■■□□□ 1.42
TMEM248-203ENST00000418375 URB2Q14146 1524 aaKnown RBP23.84■■□□□ 1.41
TMEM248-203ENST00000418375 PRDM2Q13029 1718 aa23.73■■□□□ 1.39
TMEM248-203ENST00000418375 TOPBP1Q92547 1522 aa23.6■■□□□ 1.37
TMEM248-203ENST00000418375 IFT140Q96RY7 1462 aa23.59■■□□□ 1.37
TMEM248-203ENST00000418375 ABCC8Q09428 1581 aa23.58■■□□□ 1.37
TMEM248-203ENST00000418375 OSCARQ8IYS5 282 aa23.56■■□□□ 1.36
TMEM248-203ENST00000418375 ZNF608Q9ULD9 1512 aaPredicted RBP23.52■■□□□ 1.36
TMEM248-203ENST00000418375 DNMBPQ6XZF7 1577 aa23.52■■□□□ 1.36
TMEM248-203ENST00000418375 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
TMEM248-203ENST00000418375 CHIC1Q5VXU3 224 aa23.39■■□□□ 1.33
TMEM248-203ENST00000418375 POLA1P09884 1462 aaPredicted RBP23.38■■□□□ 1.33
TMEM248-203ENST00000418375 EIF4G3O43432 1585 aaKnown RBP23.36■■□□□ 1.33
TMEM248-203ENST00000418375 TARBP1Q13395 1621 aaKnown RBP23.35■■□□□ 1.33
TMEM248-203ENST00000418375 AQRO60306 1485 aaKnown RBP eCLIP23.34■■□□□ 1.334e-6■■□□□ 13.1
TMEM248-203ENST00000418375 SOGA1O94964 1423 aa23.3■■□□□ 1.32
TMEM248-203ENST00000418375 RAD54L2Q9Y4B4 1467 aa23.3■■□□□ 1.32
TMEM248-203ENST00000418375 FGD5Q6ZNL6 1462 aa23.25■■□□□ 1.31
TMEM248-203ENST00000418375 CUX1P39880 1505 aa23.24■■□□□ 1.31
TMEM248-203ENST00000418375 TDRD9Q8NDG6 1382 aaKnown RBP23.24■■□□□ 1.31
TMEM248-203ENST00000418375 FBLN2P98095 1184 aa23.2■■□□□ 1.3
TMEM248-203ENST00000418375 RIMBP3CA6NJZ7 1639 aa23.15■■□□□ 1.3
TMEM248-203ENST00000418375 RIMBP3BA6NNM3 1639 aa23.15■■□□□ 1.3
TMEM248-203ENST00000418375 RIMBP3Q9UFD9 1639 aa23.15■■□□□ 1.3
TMEM248-203ENST00000418375 WDR97A6NE52 1622 aa23.14■■□□□ 1.29
TMEM248-203ENST00000418375 ARHGEF11O15085 1522 aa23.13■■□□□ 1.29
TMEM248-203ENST00000418375 CHD1O14646 1710 aa23.12■■□□□ 1.29
TMEM248-203ENST00000418375 SNAPC4Q5SXM2 1469 aa23.1■■□□□ 1.29
TMEM248-203ENST00000418375 WRNQ14191 1432 aaPredicted RBP eCLIP23.08■■□□□ 1.28
TMEM248-203ENST00000418375 GRIN2BQ13224 1484 aa23.07■■□□□ 1.28
TMEM248-203ENST00000418375 CHMP7Q8WUX9 453 aaPredicted RBP23.05■■□□□ 1.28
TMEM248-203ENST00000418375 MAGI1Q96QZ7 1491 aaPredicted RBP23.05■■□□□ 1.28
TMEM248-203ENST00000418375 GAPVD1Q14C86 1478 aa23■■□□□ 1.27
TMEM248-203ENST00000418375 ABCA10Q8WWZ4 1543 aa23■■□□□ 1.27
TMEM248-203ENST00000418375 CYB5RLQ6IPT4 315 aa23■■□□□ 1.27
TMEM248-203ENST00000418375 SYNJ2O15056 1496 aa22.97■■□□□ 1.27
TMEM248-203ENST00000418375 TOP2BQ02880 1626 aa22.97■■□□□ 1.27
TMEM248-203ENST00000418375 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
TMEM248-203ENST00000418375 BIVM-ERCC5R4GMW8 1640 aa22.94■■□□□ 1.26
TMEM248-203ENST00000418375 CLASP1Q7Z460 1538 aa22.92■■□□□ 1.26
TMEM248-203ENST00000418375 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
TMEM248-203ENST00000418375 ABCA5Q8WWZ7 1642 aa22.91■■□□□ 1.26
TMEM248-203ENST00000418375 PBRM1Q86U86 1689 aa22.9■■□□□ 1.26
TMEM248-203ENST00000418375 GRIN2AQ12879 1464 aa22.76■■□□□ 1.23
TMEM248-203ENST00000418375 ADAMTS12P58397 1594 aa22.74■■□□□ 1.23
TMEM248-203ENST00000418375 FHAD1B1AJZ9 1412 aa22.74■■□□□ 1.23
TMEM248-203ENST00000418375 TRHP20396 242 aaPredicted RBP22.71■■□□□ 1.23
TMEM248-203ENST00000418375 ERICH3Q5RHP9 1530 aa22.71■■□□□ 1.23
TMEM248-203ENST00000418375 NUP160Q12769 1436 aa22.68■■□□□ 1.22
TMEM248-203ENST00000418375 CEP170Q5SW79 1584 aa22.64■■□□□ 1.22
TMEM248-203ENST00000418375 KIF27Q86VH2 1401 aa22.61■■□□□ 1.21
TMEM248-203ENST00000418375 ERCC6L2Q5T890 1561 aa22.56■■□□□ 1.2
TMEM248-203ENST00000418375 SHROOM2Q13796 1616 aa22.52■■□□□ 1.2
TMEM248-203ENST00000418375 JPH4Q96JJ6 628 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms