RNA–Protein interactions for RNA: ENST00000411938.1

LSM8-202, Transcript of LSM8 homolog, U6 small nuclear RNA associated, humanhuman

TSL 3

Gene LSM8, Length 290 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM8-202ENST00000411938 NISCHQ9Y2I1 1504 aa17.76■□□□□ 0.43
LSM8-202ENST00000411938 ABCC9O60706 1549 aa16.67■□□□□ 0.26
LSM8-202ENST00000411938 DNAJC5BQ9UF47 199 aa16.09■□□□□ 0.17
LSM8-202ENST00000411938 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.17
LSM8-202ENST00000411938 RB1CC1Q8TDY2 1594 aa15.6■□□□□ 0.09
LSM8-202ENST00000411938 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.07
LSM8-202ENST00000411938 NACADO15069 1562 aa15.36■□□□□ 0.05
LSM8-202ENST00000411938 DCAF8L2P0C7V8 631 aa15.35■□□□□ 0.05
LSM8-202ENST00000411938 UNC13AQ9UPW8 1703 aa15.18■□□□□ 0.02
LSM8-202ENST00000411938 DNAJC5Q9H3Z4 198 aa15.14■□□□□ 0.01
LSM8-202ENST00000411938 BICRAQ9NZM4 1560 aa15.14■□□□□ 0.01
LSM8-202ENST00000411938 CECR2Q9BXF3 1484 aa15.06■□□□□ 0
LSM8-202ENST00000411938 CC2D2AQ9P2K1 1620 aa14.99□□□□□ -0.01
LSM8-202ENST00000411938 MYO15BQ96JP2 1530 aa14.97□□□□□ -0.01
LSM8-202ENST00000411938 SHROOM4Q9ULL8 1493 aa14.88□□□□□ -0.03
LSM8-202ENST00000411938 EIF4G1Q04637 1599 aaKnown RBP14.82□□□□□ -0.04
LSM8-202ENST00000411938 SCRIBQ14160 1630 aa14.7□□□□□ -0.06
LSM8-202ENST00000411938 DCAF1Q9Y4B6 1507 aa14.6□□□□□ -0.07
LSM8-202ENST00000411938 ZCCHC6Q5VYS8 1495 aaKnown RBP14.59□□□□□ -0.07
LSM8-202ENST00000411938 CUX2O14529 1486 aa14.52□□□□□ -0.08
LSM8-202ENST00000411938 ERCC6Q03468 1493 aa14.44□□□□□ -0.1
LSM8-202ENST00000411938 TRIM41Q8WV44 630 aa14.32□□□□□ -0.12
LSM8-202ENST00000411938 NCAPD3P42695 1498 aa14.21□□□□□ -0.13
LSM8-202ENST00000411938 NESP48681 1621 aa14.16□□□□□ -0.14
LSM8-202ENST00000411938 ATAD2BQ9ULI0 1458 aa14.11□□□□□ -0.15
LSM8-202ENST00000411938 THOC2Q8NI27 1593 aaKnown RBP14.05□□□□□ -0.16
LSM8-202ENST00000411938 HMGXB3Q12766 1538 aa14.03□□□□□ -0.16
LSM8-202ENST00000411938 SMARCA2P51531 1590 aa14.03□□□□□ -0.16
LSM8-202ENST00000411938 BAZ1BQ9UIG0 1483 aaKnown RBP13.95□□□□□ -0.18
LSM8-202ENST00000411938 LAMC3Q9Y6N6 1575 aa13.94□□□□□ -0.18
LSM8-202ENST00000411938 SMARCA4P51532 1647 aa13.93□□□□□ -0.18
LSM8-202ENST00000411938 PDS5BQ9NTI5 1447 aa13.93□□□□□ -0.18
LSM8-202ENST00000411938 KIF21AQ7Z4S6 1674 aa13.91□□□□□ -0.18
LSM8-202ENST00000411938 OSCARQ8IYS5 282 aa13.86□□□□□ -0.19
LSM8-202ENST00000411938 MRC2Q9UBG0 1479 aa13.82□□□□□ -0.2
LSM8-202ENST00000411938 BAZ1AQ9NRL2 1556 aaPredicted RBP13.82□□□□□ -0.2
LSM8-202ENST00000411938 CADPSQ9ULU8 1353 aa13.78□□□□□ -0.2
LSM8-202ENST00000411938 PEG3Q9GZU2 1588 aa13.78□□□□□ -0.2
LSM8-202ENST00000411938 WDR62O43379 1518 aa13.77□□□□□ -0.21
LSM8-202ENST00000411938 MROH2BQ7Z745 1585 aa13.68□□□□□ -0.22
LSM8-202ENST00000411938 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
LSM8-202ENST00000411938 RIMBP3CA6NJZ7 1639 aa13.65□□□□□ -0.22
LSM8-202ENST00000411938 RIMBP3BA6NNM3 1639 aa13.65□□□□□ -0.22
LSM8-202ENST00000411938 RIMBP3Q9UFD9 1639 aa13.65□□□□□ -0.22
LSM8-202ENST00000411938 FANCD2Q9BXW9 1451 aa13.62□□□□□ -0.23
LSM8-202ENST00000411938 TRHP20396 242 aaPredicted RBP13.62□□□□□ -0.23
LSM8-202ENST00000411938 CYB5RLQ6IPT4 315 aa13.59□□□□□ -0.23
LSM8-202ENST00000411938 AEBP2Q6ZN18 517 aaPredicted RBP13.59□□□□□ -0.23
LSM8-202ENST00000411938 ARHGEF11O15085 1522 aa13.58□□□□□ -0.24
LSM8-202ENST00000411938 URB2Q14146 1524 aaKnown RBP13.52□□□□□ -0.25
LSM8-202ENST00000411938 CFTRP13569 1480 aa13.49□□□□□ -0.25
LSM8-202ENST00000411938 WIZO95785 1651 aa13.48□□□□□ -0.25
LSM8-202ENST00000411938 ZNF608Q9ULD9 1512 aaPredicted RBP13.45□□□□□ -0.26
LSM8-202ENST00000411938 IFT140Q96RY7 1462 aa13.42□□□□□ -0.26
LSM8-202ENST00000411938 ARAP1Q96P48 1450 aa13.41□□□□□ -0.26
LSM8-202ENST00000411938 FBLN2P98095 1184 aa13.38□□□□□ -0.27
LSM8-202ENST00000411938 RSF1Q96T23 1441 aaPredicted RBP13.32□□□□□ -0.28
LSM8-202ENST00000411938 EIF4G3O43432 1585 aaKnown RBP13.31□□□□□ -0.28
LSM8-202ENST00000411938 TOPBP1Q92547 1522 aa13.3□□□□□ -0.28
LSM8-202ENST00000411938 CHD1O14646 1710 aa13.3□□□□□ -0.28
LSM8-202ENST00000411938 AQRO60306 1485 aaKnown RBP eCLIP13.29□□□□□ -0.283e-11■■■■■ 54.3
LSM8-202ENST00000411938 TOP2AP11388 1531 aaKnown RBP13.28□□□□□ -0.28
LSM8-202ENST00000411938 PRDM2Q13029 1718 aa13.24□□□□□ -0.29
LSM8-202ENST00000411938 ABCC8Q09428 1581 aa13.24□□□□□ -0.29
LSM8-202ENST00000411938 DNMBPQ6XZF7 1577 aa13.19□□□□□ -0.3
LSM8-202ENST00000411938 TARBP1Q13395 1621 aaKnown RBP13.18□□□□□ -0.3
LSM8-202ENST00000411938 CCDC88BA6NC98 1476 aa13.16□□□□□ -0.3
LSM8-202ENST00000411938 CHMP7Q8WUX9 453 aaPredicted RBP13.16□□□□□ -0.3
LSM8-202ENST00000411938 TDRD9Q8NDG6 1382 aaKnown RBP13.16□□□□□ -0.3
LSM8-202ENST00000411938 CLASP1Q7Z460 1538 aa13.14□□□□□ -0.31
LSM8-202ENST00000411938 POLA1P09884 1462 aaPredicted RBP13.13□□□□□ -0.31
LSM8-202ENST00000411938 SYNJ1O43426 1573 aa13.11□□□□□ -0.31
LSM8-202ENST00000411938 SNAPC4Q5SXM2 1469 aa13.11□□□□□ -0.31
LSM8-202ENST00000411938 RAD54L2Q9Y4B4 1467 aa13.11□□□□□ -0.31
LSM8-202ENST00000411938 SOGA1O94964 1423 aa13.1□□□□□ -0.31
LSM8-202ENST00000411938 GAPVD1Q14C86 1478 aa13.1□□□□□ -0.31
LSM8-202ENST00000411938 MAGI1Q96QZ7 1491 aaPredicted RBP13.05□□□□□ -0.32
LSM8-202ENST00000411938 ILDR1Q86SU0 546 aaPredicted RBP13.03□□□□□ -0.32
LSM8-202ENST00000411938 SYNJ2O15056 1496 aa13.02□□□□□ -0.33
LSM8-202ENST00000411938 GRIN2BQ13224 1484 aa13.02□□□□□ -0.33
LSM8-202ENST00000411938 WDR97A6NE52 1622 aa12.99□□□□□ -0.33
LSM8-202ENST00000411938 FGD5Q6ZNL6 1462 aa12.98□□□□□ -0.33
LSM8-202ENST00000411938 ERCC6L2Q5T890 1561 aa12.93□□□□□ -0.34
LSM8-202ENST00000411938 KDM4FA0A1W2PPD8 638 aa12.89□□□□□ -0.35
LSM8-202ENST00000411938 CUX1P39880 1505 aa12.88□□□□□ -0.35
LSM8-202ENST00000411938 FAM69CQ0P6D2 419 aa12.87□□□□□ -0.35
LSM8-202ENST00000411938 PBRM1Q86U86 1689 aa12.86□□□□□ -0.35
LSM8-202ENST00000411938 KIF13AQ9H1H9 1805 aa12.86□□□□□ -0.35
LSM8-202ENST00000411938 CEP170Q5SW79 1584 aa12.86□□□□□ -0.35
LSM8-202ENST00000411938 GRIN2AQ12879 1464 aa12.84□□□□□ -0.35
LSM8-202ENST00000411938 NPM1P06748 294 aaKnown RBP eCLIP12.81□□□□□ -0.36
LSM8-202ENST00000411938 NUP160Q12769 1436 aa12.8□□□□□ -0.36
LSM8-202ENST00000411938 ABCA10Q8WWZ4 1543 aa12.79□□□□□ -0.36
LSM8-202ENST00000411938 ABCA5Q8WWZ7 1642 aa12.79□□□□□ -0.36
LSM8-202ENST00000411938 ABCC10Q5T3U5 1492 aa12.78□□□□□ -0.36
LSM8-202ENST00000411938 PRG4Q92954 1404 aaPredicted RBP12.77□□□□□ -0.37
LSM8-202ENST00000411938 SHROOM2Q13796 1616 aa12.77□□□□□ -0.37
LSM8-202ENST00000411938 KDM6BO15054 1643 aa12.76□□□□□ -0.37
LSM8-202ENST00000411938 ADAMTS12P58397 1594 aa12.74□□□□□ -0.37
LSM8-202ENST00000411938 JPH4Q96JJ6 628 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms