RNA–Protein interactions for RNA: ENST00000411464.3

MRPL55-220, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 3

Gene MRPL55, Length 767 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-220ENST00000411464 NISCHQ9Y2I1 1504 aa41.91■■■■■ 4.3
MRPL55-220ENST00000411464 ABCC9O60706 1549 aa37.91■■■■□ 3.66
MRPL55-220ENST00000411464 CCDC180Q9P1Z9 1646 aa37.56■■■■□ 3.6
MRPL55-220ENST00000411464 RB1CC1Q8TDY2 1594 aa35.95■■■■□ 3.35
MRPL55-220ENST00000411464 DNAJC5BQ9UF47 199 aa35.78■■■■□ 3.32
MRPL55-220ENST00000411464 DCAF8L2P0C7V8 631 aa35.68■■■■□ 3.3
MRPL55-220ENST00000411464 NACADO15069 1562 aa35.66■■■■□ 3.3
MRPL55-220ENST00000411464 PABPN1Q86U42 306 aaKnown RBP eCLIP35.37■■■■□ 3.25
MRPL55-220ENST00000411464 MYO15BQ96JP2 1530 aa35.11■■■■□ 3.21
MRPL55-220ENST00000411464 UNC13AQ9UPW8 1703 aa34.92■■■■□ 3.18
MRPL55-220ENST00000411464 BICRAQ9NZM4 1560 aa34.84■■■■□ 3.17
MRPL55-220ENST00000411464 ZCCHC6Q5VYS8 1495 aaKnown RBP34.66■■■■□ 3.14
MRPL55-220ENST00000411464 DCAF1Q9Y4B6 1507 aa34.58■■■■□ 3.13
MRPL55-220ENST00000411464 SHROOM4Q9ULL8 1493 aa34.42■■■■□ 3.1
MRPL55-220ENST00000411464 SCRIBQ14160 1630 aa34.29■■■■□ 3.08
MRPL55-220ENST00000411464 CECR2Q9BXF3 1484 aa34.18■■■■□ 3.06
MRPL55-220ENST00000411464 CC2D2AQ9P2K1 1620 aa34.16■■■■□ 3.06
MRPL55-220ENST00000411464 EIF4G1Q04637 1599 aaKnown RBP34.05■■■■□ 3.04
MRPL55-220ENST00000411464 DNAJC5Q9H3Z4 198 aa33.03■■■□□ 2.88
MRPL55-220ENST00000411464 NCAPD3P42695 1498 aa32.98■■■□□ 2.87
MRPL55-220ENST00000411464 ATAD2BQ9ULI0 1458 aa32.84■■■□□ 2.85
MRPL55-220ENST00000411464 ERCC6Q03468 1493 aa32.78■■■□□ 2.84
MRPL55-220ENST00000411464 CUX2O14529 1486 aa32.74■■■□□ 2.83
MRPL55-220ENST00000411464 SMARCA2P51531 1590 aa32.71■■■□□ 2.83
MRPL55-220ENST00000411464 SMARCA4P51532 1647 aa32.67■■■□□ 2.82
MRPL55-220ENST00000411464 HMGXB3Q12766 1538 aa32.64■■■□□ 2.82
MRPL55-220ENST00000411464 BAZ1AQ9NRL2 1556 aaPredicted RBP32.54■■■□□ 2.8
MRPL55-220ENST00000411464 BAZ1BQ9UIG0 1483 aaKnown RBP32.52■■■□□ 2.8
MRPL55-220ENST00000411464 NESP48681 1621 aa32.48■■■□□ 2.79
MRPL55-220ENST00000411464 PEG3Q9GZU2 1588 aa32.36■■■□□ 2.77
MRPL55-220ENST00000411464 MROH2BQ7Z745 1585 aa32.28■■■□□ 2.76
MRPL55-220ENST00000411464 LAMC3Q9Y6N6 1575 aa32.19■■■□□ 2.74
MRPL55-220ENST00000411464 PDS5BQ9NTI5 1447 aa32.14■■■□□ 2.74
MRPL55-220ENST00000411464 THOC2Q8NI27 1593 aaKnown RBP32.09■■■□□ 2.73
MRPL55-220ENST00000411464 CADPSQ9ULU8 1353 aa32.01■■■□□ 2.71
MRPL55-220ENST00000411464 KIF21AQ7Z4S6 1674 aa31.92■■■□□ 2.7
MRPL55-220ENST00000411464 WIZO95785 1651 aa31.83■■■□□ 2.69
MRPL55-220ENST00000411464 MRC2Q9UBG0 1479 aa31.8■■■□□ 2.68
MRPL55-220ENST00000411464 WDR62O43379 1518 aa31.67■■■□□ 2.66
MRPL55-220ENST00000411464 CEP164Q9UPV0 1460 aa31.65■■■□□ 2.66
MRPL55-220ENST00000411464 FANCD2Q9BXW9 1451 aa31.61■■■□□ 2.65
MRPL55-220ENST00000411464 RSF1Q96T23 1441 aaPredicted RBP31.6■■■□□ 2.65
MRPL55-220ENST00000411464 CFTRP13569 1480 aa31.55■■■□□ 2.64
MRPL55-220ENST00000411464 TRIM41Q8WV44 630 aa31.54■■■□□ 2.64
MRPL55-220ENST00000411464 TOP2AP11388 1531 aaKnown RBP31.45■■■□□ 2.63
MRPL55-220ENST00000411464 OSCARQ8IYS5 282 aa31.35■■■□□ 2.61
MRPL55-220ENST00000411464 URB2Q14146 1524 aaKnown RBP31.32■■■□□ 2.6
MRPL55-220ENST00000411464 CCDC88BA6NC98 1476 aa31.16■■■□□ 2.58
MRPL55-220ENST00000411464 IFT140Q96RY7 1462 aa31.03■■■□□ 2.56
MRPL55-220ENST00000411464 ZNF608Q9ULD9 1512 aaPredicted RBP30.98■■■□□ 2.55
MRPL55-220ENST00000411464 PRDM2Q13029 1718 aa30.97■■■□□ 2.55
MRPL55-220ENST00000411464 TOPBP1Q92547 1522 aa30.95■■■□□ 2.55
MRPL55-220ENST00000411464 ABCC8Q09428 1581 aa30.92■■■□□ 2.54
MRPL55-220ENST00000411464 DNMBPQ6XZF7 1577 aa30.79■■■□□ 2.52
MRPL55-220ENST00000411464 RIMBP3CA6NJZ7 1639 aa30.75■■■□□ 2.51
MRPL55-220ENST00000411464 RIMBP3BA6NNM3 1639 aa30.75■■■□□ 2.51
MRPL55-220ENST00000411464 RIMBP3Q9UFD9 1639 aa30.75■■■□□ 2.51
MRPL55-220ENST00000411464 AQRO60306 1485 aaKnown RBP eCLIP30.73■■■□□ 2.513e-7■■■■■ 28.3
MRPL55-220ENST00000411464 EIF4G3O43432 1585 aaKnown RBP30.71■■■□□ 2.51
MRPL55-220ENST00000411464 ARHGEF11O15085 1522 aa30.69■■■□□ 2.5
MRPL55-220ENST00000411464 FBLN2P98095 1184 aa30.67■■■□□ 2.5
MRPL55-220ENST00000411464 CYB5RLQ6IPT4 315 aa30.63■■■□□ 2.49
MRPL55-220ENST00000411464 POLA1P09884 1462 aaPredicted RBP30.63■■■□□ 2.49
MRPL55-220ENST00000411464 TARBP1Q13395 1621 aaKnown RBP30.62■■■□□ 2.49
MRPL55-220ENST00000411464 SOGA1O94964 1423 aa30.57■■■□□ 2.48
MRPL55-220ENST00000411464 RAD54L2Q9Y4B4 1467 aa30.55■■■□□ 2.48
MRPL55-220ENST00000411464 TDRD9Q8NDG6 1382 aaKnown RBP30.54■■■□□ 2.48
MRPL55-220ENST00000411464 CHD1O14646 1710 aa30.45■■■□□ 2.47
MRPL55-220ENST00000411464 FGD5Q6ZNL6 1462 aa30.42■■■□□ 2.46
MRPL55-220ENST00000411464 CHMP7Q8WUX9 453 aaPredicted RBP30.4■■■□□ 2.46
MRPL55-220ENST00000411464 TRHP20396 242 aaPredicted RBP30.38■■■□□ 2.45
MRPL55-220ENST00000411464 ARAP1Q96P48 1450 aa30.38■■■□□ 2.45
MRPL55-220ENST00000411464 SNAPC4Q5SXM2 1469 aa30.37■■■□□ 2.45
MRPL55-220ENST00000411464 CUX1P39880 1505 aa30.33■■■□□ 2.45
MRPL55-220ENST00000411464 WDR97A6NE52 1622 aa30.31■■■□□ 2.44
MRPL55-220ENST00000411464 GRIN2BQ13224 1484 aa30.29■■■□□ 2.44
MRPL55-220ENST00000411464 MAGI1Q96QZ7 1491 aaPredicted RBP30.28■■■□□ 2.44
MRPL55-220ENST00000411464 SYNJ1O43426 1573 aa30.2■■■□□ 2.42
MRPL55-220ENST00000411464 SUPT5HO00267 1087 aaKnown RBP30.19■■■□□ 2.42
MRPL55-220ENST00000411464 SYNJ2O15056 1496 aa30.19■■■□□ 2.42
MRPL55-220ENST00000411464 CLASP1Q7Z460 1538 aa30.18■■■□□ 2.42
MRPL55-220ENST00000411464 GAPVD1Q14C86 1478 aa30.16■■■□□ 2.42
MRPL55-220ENST00000411464 ABCA10Q8WWZ4 1543 aa30.06■■■□□ 2.4
MRPL55-220ENST00000411464 WRNQ14191 1432 aaPredicted RBP eCLIP29.98■■■□□ 2.39
MRPL55-220ENST00000411464 PBRM1Q86U86 1689 aa29.97■■■□□ 2.39
MRPL55-220ENST00000411464 ABCA5Q8WWZ7 1642 aa29.94■■■□□ 2.38
MRPL55-220ENST00000411464 GRIN2AQ12879 1464 aa29.87■■■□□ 2.37
MRPL55-220ENST00000411464 FHAD1B1AJZ9 1412 aa29.79■■■□□ 2.36
MRPL55-220ENST00000411464 NUP160Q12769 1436 aa29.78■■■□□ 2.36
MRPL55-220ENST00000411464 TOP2BQ02880 1626 aa29.77■■■□□ 2.36
MRPL55-220ENST00000411464 ADAMTS12P58397 1594 aa29.75■■■□□ 2.35
MRPL55-220ENST00000411464 BIVM-ERCC5R4GMW8 1640 aa29.72■■■□□ 2.35
MRPL55-220ENST00000411464 ERCC6L2Q5T890 1561 aa29.71■■■□□ 2.35
MRPL55-220ENST00000411464 CEP170Q5SW79 1584 aa29.7■■■□□ 2.35
MRPL55-220ENST00000411464 ERICH3Q5RHP9 1530 aa29.67■■■□□ 2.34
MRPL55-220ENST00000411464 AEBP2Q6ZN18 517 aaPredicted RBP29.64■■■□□ 2.34
MRPL55-220ENST00000411464 JPH4Q96JJ6 628 aa29.59■■■□□ 2.33
MRPL55-220ENST00000411464 SHROOM2Q13796 1616 aa29.56■■■□□ 2.32
MRPL55-220ENST00000411464 PRG4Q92954 1404 aaPredicted RBP29.56■■■□□ 2.32
MRPL55-220ENST00000411464 NPM1P06748 294 aaKnown RBP eCLIP29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms