RNA–Protein interactions for RNA: ENST00000409886.3

RGPD3-202, Transcript of RANBP2-like and GRIP domain containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene RGPD3, Length 5,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD3-202ENST00000409886 NISCHQ9Y2I1 1504 aa7.46□□□□□ -1.22
RGPD3-202ENST00000409886 CCDC180Q9P1Z9 1646 aa7.25□□□□□ -1.25
RGPD3-202ENST00000409886 ABCC9O60706 1549 aa7.15□□□□□ -1.27
RGPD3-202ENST00000409886 DNAJC5Q9H3Z4 198 aa7.01□□□□□ -1.29
RGPD3-202ENST00000409886 DNAJC5BQ9UF47 199 aa7□□□□□ -1.29
RGPD3-202ENST00000409886 RB1CC1Q8TDY2 1594 aa6.96□□□□□ -1.3
RGPD3-202ENST00000409886 SHROOM4Q9ULL8 1493 aa6.91□□□□□ -1.3
RGPD3-202ENST00000409886 NACADO15069 1562 aa6.83□□□□□ -1.32
RGPD3-202ENST00000409886 UNC13AQ9UPW8 1703 aa6.81□□□□□ -1.32
RGPD3-202ENST00000409886 CUX2O14529 1486 aa6.75□□□□□ -1.33
RGPD3-202ENST00000409886 MYO15BQ96JP2 1530 aa6.73□□□□□ -1.33
RGPD3-202ENST00000409886 BICRAQ9NZM4 1560 aa6.7□□□□□ -1.34
RGPD3-202ENST00000409886 CC2D2AQ9P2K1 1620 aa6.66□□□□□ -1.34
RGPD3-202ENST00000409886 CECR2Q9BXF3 1484 aa6.62□□□□□ -1.35
RGPD3-202ENST00000409886 EIF4G1Q04637 1599 aaKnown RBP6.54□□□□□ -1.36
RGPD3-202ENST00000409886 DCAF1Q9Y4B6 1507 aa6.4□□□□□ -1.38
RGPD3-202ENST00000409886 THOC2Q8NI27 1593 aaKnown RBP6.38□□□□□ -1.39
RGPD3-202ENST00000409886 PABPN1Q86U42 306 aaKnown RBP eCLIP6.36□□□□□ -1.39
RGPD3-202ENST00000409886 ERCC6Q03468 1493 aa6.29□□□□□ -1.4
RGPD3-202ENST00000409886 BAZ1AQ9NRL2 1556 aaPredicted RBP6.25□□□□□ -1.41
RGPD3-202ENST00000409886 HMGXB3Q12766 1538 aa6.24□□□□□ -1.41
RGPD3-202ENST00000409886 LAMC3Q9Y6N6 1575 aa6.23□□□□□ -1.41
RGPD3-202ENST00000409886 NCAPD3P42695 1498 aa6.2□□□□□ -1.42
RGPD3-202ENST00000409886 RIMBP3CA6NJZ7 1639 aa6.2□□□□□ -1.42
RGPD3-202ENST00000409886 RIMBP3BA6NNM3 1639 aa6.2□□□□□ -1.42
RGPD3-202ENST00000409886 RIMBP3Q9UFD9 1639 aa6.2□□□□□ -1.42
RGPD3-202ENST00000409886 SMARCA2P51531 1590 aa6.19□□□□□ -1.42
RGPD3-202ENST00000409886 TRIM41Q8WV44 630 aa6.18□□□□□ -1.42
RGPD3-202ENST00000409886 WDR62O43379 1518 aa6.18□□□□□ -1.42
RGPD3-202ENST00000409886 KIF21AQ7Z4S6 1674 aa6.16□□□□□ -1.42
RGPD3-202ENST00000409886 SCRIBQ14160 1630 aa6.15□□□□□ -1.43
RGPD3-202ENST00000409886 ZCCHC6Q5VYS8 1495 aaKnown RBP6.13□□□□□ -1.43
RGPD3-202ENST00000409886 MRC2Q9UBG0 1479 aa6.09□□□□□ -1.43
RGPD3-202ENST00000409886 PEG3Q9GZU2 1588 aa6.09□□□□□ -1.43
RGPD3-202ENST00000409886 AEBP2Q6ZN18 517 aaPredicted RBP6.08□□□□□ -1.44
RGPD3-202ENST00000409886 PDS5BQ9NTI5 1447 aa6.06□□□□□ -1.44
RGPD3-202ENST00000409886 ARHGEF11O15085 1522 aa6.06□□□□□ -1.44
RGPD3-202ENST00000409886 ATAD2BQ9ULI0 1458 aa6.02□□□□□ -1.45
RGPD3-202ENST00000409886 ERCC6L2Q5T890 1561 aa6.02□□□□□ -1.45
RGPD3-202ENST00000409886 RSF1Q96T23 1441 aaPredicted RBP6.01□□□□□ -1.45
RGPD3-202ENST00000409886 OSCARQ8IYS5 282 aa6.01□□□□□ -1.45
RGPD3-202ENST00000409886 PRDM2Q13029 1718 aa6□□□□□ -1.45
RGPD3-202ENST00000409886 NESP48681 1621 aa5.99□□□□□ -1.45
RGPD3-202ENST00000409886 SMARCA4P51532 1647 aa5.99□□□□□ -1.45
RGPD3-202ENST00000409886 WDR97A6NE52 1622 aa5.97□□□□□ -1.45
RGPD3-202ENST00000409886 ARAP1Q96P48 1450 aa5.95□□□□□ -1.46
RGPD3-202ENST00000409886 BAZ1BQ9UIG0 1483 aaKnown RBP5.92□□□□□ -1.46
RGPD3-202ENST00000409886 CHD1O14646 1710 aa5.91□□□□□ -1.46
RGPD3-202ENST00000409886 ILDR1Q86SU0 546 aaPredicted RBP5.91□□□□□ -1.46
RGPD3-202ENST00000409886 USP34Q70CQ2 3546 aa5.91□□□□□ -1.46
RGPD3-202ENST00000409886 CEP164Q9UPV0 1460 aa5.9□□□□□ -1.46
RGPD3-202ENST00000409886 CLASP1Q7Z460 1538 aa5.89□□□□□ -1.47
RGPD3-202ENST00000409886 IFT140Q96RY7 1462 aa5.88□□□□□ -1.47
RGPD3-202ENST00000409886 CADPSQ9ULU8 1353 aa5.86□□□□□ -1.47
RGPD3-202ENST00000409886 PPARGC1BQ86YN6 1023 aaKnown RBP5.86□□□□□ -1.47
RGPD3-202ENST00000409886 KIF13AQ9H1H9 1805 aa5.85□□□□□ -1.47
RGPD3-202ENST00000409886 EIF4G3O43432 1585 aaKnown RBP5.84□□□□□ -1.47
RGPD3-202ENST00000409886 DCAF8L2P0C7V8 631 aa5.83□□□□□ -1.48
RGPD3-202ENST00000409886 SYNJ1O43426 1573 aa5.82□□□□□ -1.48
RGPD3-202ENST00000409886 ABCC8Q09428 1581 aa5.8□□□□□ -1.48
RGPD3-202ENST00000409886 FANCD2Q9BXW9 1451 aa5.8□□□□□ -1.48
RGPD3-202ENST00000409886 URB2Q14146 1524 aaKnown RBP5.79□□□□□ -1.48
RGPD3-202ENST00000409886 TRHP20396 242 aaPredicted RBP5.77□□□□□ -1.49
RGPD3-202ENST00000409886 CFTRP13569 1480 aa5.77□□□□□ -1.49
RGPD3-202ENST00000409886 TARBP1Q13395 1621 aaKnown RBP5.76□□□□□ -1.49
RGPD3-202ENST00000409886 HECW2Q9P2P5 1572 aa5.76□□□□□ -1.49
RGPD3-202ENST00000409886 FBXO41Q8TF61 875 aa5.75□□□□□ -1.49
RGPD3-202ENST00000409886 GOLGB1Q14789 3259 aaKnown RBP5.74□□□□□ -1.49
RGPD3-202ENST00000409886 SHROOM2Q13796 1616 aa5.72□□□□□ -1.49
RGPD3-202ENST00000409886 DNMBPQ6XZF7 1577 aa5.72□□□□□ -1.49
RGPD3-202ENST00000409886 MAPKBP1O60336 1514 aa5.72□□□□□ -1.49
RGPD3-202ENST00000409886 KDM6BO15054 1643 aa5.72□□□□□ -1.49
RGPD3-202ENST00000409886 TOP2BQ02880 1626 aa5.72□□□□□ -1.49
RGPD3-202ENST00000409886 MAGI1Q96QZ7 1491 aaPredicted RBP5.71□□□□□ -1.5
RGPD3-202ENST00000409886 SOCS7O14512 581 aa5.7□□□□□ -1.5
RGPD3-202ENST00000409886 LMTK3Q96Q04 1460 aa5.7□□□□□ -1.5
RGPD3-202ENST00000409886 CYB5RLQ6IPT4 315 aa5.69□□□□□ -1.5
RGPD3-202ENST00000409886 DIP2BQ9P265 1576 aa5.68□□□□□ -1.5
RGPD3-202ENST00000409886 ZNF608Q9ULD9 1512 aaPredicted RBP5.68□□□□□ -1.5
RGPD3-202ENST00000409886 GAPVD1Q14C86 1478 aa5.67□□□□□ -1.5
RGPD3-202ENST00000409886 TOPBP1Q92547 1522 aa5.67□□□□□ -1.5
RGPD3-202ENST00000409886 SPATA31D1Q6ZQQ2 1576 aa5.66□□□□□ -1.5
RGPD3-202ENST00000409886 PBRM1Q86U86 1689 aa5.66□□□□□ -1.5
RGPD3-202ENST00000409886 ABCC10Q5T3U5 1492 aa5.66□□□□□ -1.5
RGPD3-202ENST00000409886 GLI2P10070 1586 aa5.65□□□□□ -1.51
RGPD3-202ENST00000409886 MROH2BQ7Z745 1585 aa5.65□□□□□ -1.51
RGPD3-202ENST00000409886 ADGRL1O94910 1474 aa5.64□□□□□ -1.51
RGPD3-202ENST00000409886 KDM4FA0A1W2PPD8 638 aa5.64□□□□□ -1.51
RGPD3-202ENST00000409886 SYNJ2O15056 1496 aa5.63□□□□□ -1.51
RGPD3-202ENST00000409886 TOP2AP11388 1531 aaKnown RBP5.61□□□□□ -1.51
RGPD3-202ENST00000409886 PPRC1Q5VV67 1664 aaKnown RBP5.61□□□□□ -1.51
RGPD3-202ENST00000409886 CEP170Q5SW79 1584 aa5.59□□□□□ -1.51
RGPD3-202ENST00000409886 SNAPC4Q5SXM2 1469 aa5.58□□□□□ -1.52
RGPD3-202ENST00000409886 KIAA0586Q9BVV6 1533 aa5.58□□□□□ -1.52
RGPD3-202ENST00000409886 GRIN2BQ13224 1484 aa5.58□□□□□ -1.52
RGPD3-202ENST00000409886 IQSEC2Q5JU85 1478 aa5.58□□□□□ -1.52
RGPD3-202ENST00000409886 ABCA5Q8WWZ7 1642 aa5.56□□□□□ -1.52
RGPD3-202ENST00000409886 WIZO95785 1651 aa5.55□□□□□ -1.52
RGPD3-202ENST00000409886 MAP3K4Q9Y6R4 1608 aa5.55□□□□□ -1.52
RGPD3-202ENST00000409886 NUP160Q12769 1436 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms