RNA–Protein interactions for RNA: ENST00000407298.7

APOBEC3B-204, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 3B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene APOBEC3B, Length 1,282 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC3B-204ENST00000407298 NISCHQ9Y2I1 1504 aa30.97■■■□□ 2.55
APOBEC3B-204ENST00000407298 ABCC9O60706 1549 aa28.16■■■□□ 2.1
APOBEC3B-204ENST00000407298 CCDC180Q9P1Z9 1646 aa27.9■■■□□ 2.06
APOBEC3B-204ENST00000407298 RB1CC1Q8TDY2 1594 aa26.73■■□□□ 1.87
APOBEC3B-204ENST00000407298 DNAJC5BQ9UF47 199 aa26.64■■□□□ 1.86
APOBEC3B-204ENST00000407298 NACADO15069 1562 aa26.5■■□□□ 1.83
APOBEC3B-204ENST00000407298 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
APOBEC3B-204ENST00000407298 PABPN1Q86U42 306 aaKnown RBP eCLIP26.2■■□□□ 1.78
APOBEC3B-204ENST00000407298 MYO15BQ96JP2 1530 aa26.06■■□□□ 1.76
APOBEC3B-204ENST00000407298 UNC13AQ9UPW8 1703 aa25.99■■□□□ 1.75
APOBEC3B-204ENST00000407298 BICRAQ9NZM4 1560 aa25.86■■□□□ 1.73
APOBEC3B-204ENST00000407298 SHROOM4Q9ULL8 1493 aa25.63■■□□□ 1.69
APOBEC3B-204ENST00000407298 DCAF1Q9Y4B6 1507 aa25.6■■□□□ 1.69
APOBEC3B-204ENST00000407298 ZCCHC6Q5VYS8 1495 aaKnown RBP25.58■■□□□ 1.69
APOBEC3B-204ENST00000407298 CECR2Q9BXF3 1484 aa25.43■■□□□ 1.66
APOBEC3B-204ENST00000407298 CC2D2AQ9P2K1 1620 aa25.41■■□□□ 1.66
APOBEC3B-204ENST00000407298 SCRIBQ14160 1630 aa25.37■■□□□ 1.65
APOBEC3B-204ENST00000407298 EIF4G1Q04637 1599 aaKnown RBP25.3■■□□□ 1.64
APOBEC3B-204ENST00000407298 DNAJC5Q9H3Z4 198 aa24.77■■□□□ 1.56
APOBEC3B-204ENST00000407298 AEBP2Q6ZN18 517 aaPredicted RBP24.6■■□□□ 1.53
APOBEC3B-204ENST00000407298 NCAPD3P42695 1498 aa24.46■■□□□ 1.51
APOBEC3B-204ENST00000407298 CUX2O14529 1486 aa24.45■■□□□ 1.51
APOBEC3B-204ENST00000407298 ERCC6Q03468 1493 aa24.4■■□□□ 1.5
APOBEC3B-204ENST00000407298 ATAD2BQ9ULI0 1458 aa24.32■■□□□ 1.48
APOBEC3B-204ENST00000407298 SMARCA2P51531 1590 aa24.28■■□□□ 1.48
APOBEC3B-204ENST00000407298 HMGXB3Q12766 1538 aa24.23■■□□□ 1.47
APOBEC3B-204ENST00000407298 SMARCA4P51532 1647 aa24.19■■□□□ 1.46
APOBEC3B-204ENST00000407298 BAZ1BQ9UIG0 1483 aaKnown RBP24.09■■□□□ 1.45
APOBEC3B-204ENST00000407298 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.45
APOBEC3B-204ENST00000407298 NESP48681 1621 aa24.07■■□□□ 1.44
APOBEC3B-204ENST00000407298 PEG3Q9GZU2 1588 aa23.98■■□□□ 1.43
APOBEC3B-204ENST00000407298 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.42
APOBEC3B-204ENST00000407298 PDS5BQ9NTI5 1447 aa23.88■■□□□ 1.41
APOBEC3B-204ENST00000407298 THOC2Q8NI27 1593 aaKnown RBP23.87■■□□□ 1.41
APOBEC3B-204ENST00000407298 MROH2BQ7Z745 1585 aa23.82■■□□□ 1.4
APOBEC3B-204ENST00000407298 KIF21AQ7Z4S6 1674 aa23.73■■□□□ 1.39
APOBEC3B-204ENST00000407298 CADPSQ9ULU8 1353 aa23.73■■□□□ 1.39
APOBEC3B-204ENST00000407298 MRC2Q9UBG0 1479 aa23.62■■□□□ 1.37
APOBEC3B-204ENST00000407298 TRIM41Q8WV44 630 aa23.55■■□□□ 1.36
APOBEC3B-204ENST00000407298 WDR62O43379 1518 aa23.54■■□□□ 1.36
APOBEC3B-204ENST00000407298 WIZO95785 1651 aa23.5■■□□□ 1.35
APOBEC3B-204ENST00000407298 CEP164Q9UPV0 1460 aa23.48■■□□□ 1.35
APOBEC3B-204ENST00000407298 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.34
APOBEC3B-204ENST00000407298 FANCD2Q9BXW9 1451 aa23.42■■□□□ 1.34
APOBEC3B-204ENST00000407298 CFTRP13569 1480 aa23.36■■□□□ 1.33
APOBEC3B-204ENST00000407298 OSCARQ8IYS5 282 aa23.36■■□□□ 1.33
APOBEC3B-204ENST00000407298 RSF1Q96T23 1441 aaPredicted RBP23.26■■□□□ 1.31
APOBEC3B-204ENST00000407298 TOP2AP11388 1531 aaKnown RBP23.23■■□□□ 1.31
APOBEC3B-204ENST00000407298 URB2Q14146 1524 aaKnown RBP23.19■■□□□ 1.3
APOBEC3B-204ENST00000407298 PRDM2Q13029 1718 aa23.04■■□□□ 1.28
APOBEC3B-204ENST00000407298 IFT140Q96RY7 1462 aa23.04■■□□□ 1.28
APOBEC3B-204ENST00000407298 CCDC88BA6NC98 1476 aa22.98■■□□□ 1.27
APOBEC3B-204ENST00000407298 ABCC8Q09428 1581 aa22.96■■□□□ 1.27
APOBEC3B-204ENST00000407298 ZNF608Q9ULD9 1512 aaPredicted RBP22.95■■□□□ 1.26
APOBEC3B-204ENST00000407298 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
APOBEC3B-204ENST00000407298 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
APOBEC3B-204ENST00000407298 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
APOBEC3B-204ENST00000407298 TOPBP1Q92547 1522 aa22.92■■□□□ 1.26
APOBEC3B-204ENST00000407298 ARHGEF11O15085 1522 aa22.86■■□□□ 1.25
APOBEC3B-204ENST00000407298 DNMBPQ6XZF7 1577 aa22.82■■□□□ 1.24
APOBEC3B-204ENST00000407298 EIF4G3O43432 1585 aaKnown RBP22.8■■□□□ 1.24
APOBEC3B-204ENST00000407298 CYB5RLQ6IPT4 315 aa22.78■■□□□ 1.24
APOBEC3B-204ENST00000407298 AQRO60306 1485 aaKnown RBP eCLIP22.74■■□□□ 1.23
APOBEC3B-204ENST00000407298 FBLN2P98095 1184 aa22.73■■□□□ 1.23
APOBEC3B-204ENST00000407298 TARBP1Q13395 1621 aaKnown RBP22.71■■□□□ 1.23
APOBEC3B-204ENST00000407298 POLA1P09884 1462 aaPredicted RBP22.66■■□□□ 1.22
APOBEC3B-204ENST00000407298 CHD1O14646 1710 aa22.66■■□□□ 1.22
APOBEC3B-204ENST00000407298 TRHP20396 242 aaPredicted RBP22.65■■□□□ 1.22
APOBEC3B-204ENST00000407298 SOGA1O94964 1423 aa22.62■■□□□ 1.21
APOBEC3B-204ENST00000407298 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
APOBEC3B-204ENST00000407298 TDRD9Q8NDG6 1382 aaKnown RBP22.58■■□□□ 1.21
APOBEC3B-204ENST00000407298 RAD54L2Q9Y4B4 1467 aa22.57■■□□□ 1.2
APOBEC3B-204ENST00000407298 WDR97A6NE52 1622 aa22.54■■□□□ 1.2
APOBEC3B-204ENST00000407298 CHMP7Q8WUX9 453 aaPredicted RBP22.54■■□□□ 1.2
APOBEC3B-204ENST00000407298 SNAPC4Q5SXM2 1469 aa22.5■■□□□ 1.19
APOBEC3B-204ENST00000407298 FGD5Q6ZNL6 1462 aa22.48■■□□□ 1.19
APOBEC3B-204ENST00000407298 MAGI1Q96QZ7 1491 aaPredicted RBP22.47■■□□□ 1.19
APOBEC3B-204ENST00000407298 SYNJ1O43426 1573 aa22.46■■□□□ 1.19
APOBEC3B-204ENST00000407298 GRIN2BQ13224 1484 aa22.45■■□□□ 1.18
APOBEC3B-204ENST00000407298 CLASP1Q7Z460 1538 aa22.43■■□□□ 1.18
APOBEC3B-204ENST00000407298 CUX1P39880 1505 aa22.4■■□□□ 1.18
APOBEC3B-204ENST00000407298 SYNJ2O15056 1496 aa22.4■■□□□ 1.18
APOBEC3B-204ENST00000407298 GAPVD1Q14C86 1478 aa22.33■■□□□ 1.16
APOBEC3B-204ENST00000407298 ABCA10Q8WWZ4 1543 aa22.25■■□□□ 1.15
APOBEC3B-204ENST00000407298 PBRM1Q86U86 1689 aa22.24■■□□□ 1.15
APOBEC3B-204ENST00000407298 ABCA5Q8WWZ7 1642 aa22.17■■□□□ 1.14
APOBEC3B-204ENST00000407298 WRNQ14191 1432 aaPredicted RBP eCLIP22.15■■□□□ 1.14
APOBEC3B-204ENST00000407298 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
APOBEC3B-204ENST00000407298 SUPT5HO00267 1087 aaKnown RBP22.08■■□□□ 1.13
APOBEC3B-204ENST00000407298 NUP160Q12769 1436 aa22.06■■□□□ 1.12
APOBEC3B-204ENST00000407298 FHAD1B1AJZ9 1412 aa22.05■■□□□ 1.12
APOBEC3B-204ENST00000407298 ADAMTS12P58397 1594 aa22.03■■□□□ 1.12
APOBEC3B-204ENST00000407298 CEP170Q5SW79 1584 aa22.03■■□□□ 1.12
APOBEC3B-204ENST00000407298 ERCC6L2Q5T890 1561 aa22.01■■□□□ 1.11
APOBEC3B-204ENST00000407298 TOP2BQ02880 1626 aa21.99■■□□□ 1.11
APOBEC3B-204ENST00000407298 ERICH3Q5RHP9 1530 aa21.97■■□□□ 1.11
APOBEC3B-204ENST00000407298 BIVM-ERCC5R4GMW8 1640 aa21.97■■□□□ 1.11
APOBEC3B-204ENST00000407298 SHROOM2Q13796 1616 aa21.95■■□□□ 1.1
APOBEC3B-204ENST00000407298 JPH4Q96JJ6 628 aa21.92■■□□□ 1.1
APOBEC3B-204ENST00000407298 PRG4Q92954 1404 aaPredicted RBP21.89■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms