RNA–Protein interactions for RNA: ENST00000406335.1

RHBDD3-202, Transcript of rhomboid domain containing 3, humanhuman

TSL 2

Gene RHBDD3, Length 755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3-202ENST00000406335 NISCHQ9Y2I1 1504 aa52.69■■■■■ 6.03
RHBDD3-202ENST00000406335 ABCC9O60706 1549 aa47.96■■■■■ 5.27
RHBDD3-202ENST00000406335 CCDC180Q9P1Z9 1646 aa47.27■■■■■ 5.16
RHBDD3-202ENST00000406335 RB1CC1Q8TDY2 1594 aa45.37■■■■■ 4.85
RHBDD3-202ENST00000406335 DNAJC5BQ9UF47 199 aa45.33■■■■■ 4.85
RHBDD3-202ENST00000406335 DCAF8L2P0C7V8 631 aa45.14■■■■■ 4.82
RHBDD3-202ENST00000406335 NACADO15069 1562 aa44.93■■■■■ 4.78
RHBDD3-202ENST00000406335 PABPN1Q86U42 306 aaKnown RBP eCLIP44.74■■■■■ 4.75
RHBDD3-202ENST00000406335 MYO15BQ96JP2 1530 aa44.09■■■■■ 4.65
RHBDD3-202ENST00000406335 UNC13AQ9UPW8 1703 aa44.07■■■■■ 4.64
RHBDD3-202ENST00000406335 BICRAQ9NZM4 1560 aa43.92■■■■■ 4.62
RHBDD3-202ENST00000406335 ZCCHC6Q5VYS8 1495 aaKnown RBP43.53■■■■■ 4.56
RHBDD3-202ENST00000406335 DCAF1Q9Y4B6 1507 aa43.39■■■■■ 4.54
RHBDD3-202ENST00000406335 SHROOM4Q9ULL8 1493 aa43.32■■■■■ 4.53
RHBDD3-202ENST00000406335 SCRIBQ14160 1630 aa43.25■■■■■ 4.51
RHBDD3-202ENST00000406335 CECR2Q9BXF3 1484 aa43.23■■■■■ 4.51
RHBDD3-202ENST00000406335 CC2D2AQ9P2K1 1620 aa43.17■■■■■ 4.5
RHBDD3-202ENST00000406335 EIF4G1Q04637 1599 aaKnown RBP42.97■■■■■ 4.47
RHBDD3-202ENST00000406335 DNAJC5Q9H3Z4 198 aa41.95■■■■■ 4.31
RHBDD3-202ENST00000406335 NCAPD3P42695 1498 aa41.52■■■■■ 4.24
RHBDD3-202ENST00000406335 ERCC6Q03468 1493 aa41.52■■■■■ 4.24
RHBDD3-202ENST00000406335 CUX2O14529 1486 aa41.41■■■■■ 4.22
RHBDD3-202ENST00000406335 ATAD2BQ9ULI0 1458 aa41.35■■■■■ 4.21
RHBDD3-202ENST00000406335 SMARCA2P51531 1590 aa41.2■■■■■ 4.19
RHBDD3-202ENST00000406335 SMARCA4P51532 1647 aa41.12■■■■■ 4.17
RHBDD3-202ENST00000406335 HMGXB3Q12766 1538 aa41.08■■■■■ 4.17
RHBDD3-202ENST00000406335 NESP48681 1621 aa41.02■■■■■ 4.16
RHBDD3-202ENST00000406335 BAZ1BQ9UIG0 1483 aaKnown RBP40.99■■■■■ 4.15
RHBDD3-202ENST00000406335 BAZ1AQ9NRL2 1556 aaPredicted RBP40.94■■■■■ 4.14
RHBDD3-202ENST00000406335 PEG3Q9GZU2 1588 aa40.65■■■■■ 4.1
RHBDD3-202ENST00000406335 MROH2BQ7Z745 1585 aa40.61■■■■■ 4.09
RHBDD3-202ENST00000406335 LAMC3Q9Y6N6 1575 aa40.61■■■■■ 4.09
RHBDD3-202ENST00000406335 PDS5BQ9NTI5 1447 aa40.56■■■■■ 4.08
RHBDD3-202ENST00000406335 THOC2Q8NI27 1593 aaKnown RBP40.52■■■■■ 4.08
RHBDD3-202ENST00000406335 CADPSQ9ULU8 1353 aa40.34■■■■■ 4.05
RHBDD3-202ENST00000406335 KIF21AQ7Z4S6 1674 aa40.32■■■■■ 4.05
RHBDD3-202ENST00000406335 TRIM41Q8WV44 630 aa40.16■■■■■ 4.02
RHBDD3-202ENST00000406335 MRC2Q9UBG0 1479 aa40.13■■■■■ 4.02
RHBDD3-202ENST00000406335 WIZO95785 1651 aa40.06■■■■■ 4
RHBDD3-202ENST00000406335 WDR62O43379 1518 aa39.95■■■■□ 3.99
RHBDD3-202ENST00000406335 CEP164Q9UPV0 1460 aa39.93■■■■□ 3.98
RHBDD3-202ENST00000406335 FANCD2Q9BXW9 1451 aa39.85■■■■□ 3.97
RHBDD3-202ENST00000406335 CFTRP13569 1480 aa39.7■■■■□ 3.95
RHBDD3-202ENST00000406335 OSCARQ8IYS5 282 aa39.69■■■■□ 3.94
RHBDD3-202ENST00000406335 RSF1Q96T23 1441 aaPredicted RBP39.67■■■■□ 3.94
RHBDD3-202ENST00000406335 TOP2AP11388 1531 aaKnown RBP39.54■■■■□ 3.92
RHBDD3-202ENST00000406335 URB2Q14146 1524 aaKnown RBP39.47■■■■□ 3.91
RHBDD3-202ENST00000406335 CCDC88BA6NC98 1476 aa39.18■■■■□ 3.86
RHBDD3-202ENST00000406335 IFT140Q96RY7 1462 aa39.14■■■■□ 3.86
RHBDD3-202ENST00000406335 ZNF608Q9ULD9 1512 aaPredicted RBP39.09■■■■□ 3.85
RHBDD3-202ENST00000406335 PRDM2Q13029 1718 aa39.01■■■■□ 3.84
RHBDD3-202ENST00000406335 TOPBP1Q92547 1522 aa39■■■■□ 3.83
RHBDD3-202ENST00000406335 ABCC8Q09428 1581 aa38.95■■■■□ 3.83
RHBDD3-202ENST00000406335 RIMBP3CA6NJZ7 1639 aa38.93■■■■□ 3.82
RHBDD3-202ENST00000406335 RIMBP3BA6NNM3 1639 aa38.93■■■■□ 3.82
RHBDD3-202ENST00000406335 RIMBP3Q9UFD9 1639 aa38.93■■■■□ 3.82
RHBDD3-202ENST00000406335 FBLN2P98095 1184 aa38.85■■■■□ 3.81
RHBDD3-202ENST00000406335 CYB5RLQ6IPT4 315 aa38.83■■■■□ 3.81
RHBDD3-202ENST00000406335 ARHGEF11O15085 1522 aa38.82■■■■□ 3.8
RHBDD3-202ENST00000406335 DNMBPQ6XZF7 1577 aa38.78■■■■□ 3.8
RHBDD3-202ENST00000406335 AQRO60306 1485 aaKnown RBP eCLIP38.78■■■■□ 3.81e-7■■■■■ 37.9
RHBDD3-202ENST00000406335 EIF4G3O43432 1585 aaKnown RBP38.76■■■■□ 3.8
RHBDD3-202ENST00000406335 TRHP20396 242 aaPredicted RBP38.62■■■■□ 3.77
RHBDD3-202ENST00000406335 POLA1P09884 1462 aaPredicted RBP38.58■■■■□ 3.77
RHBDD3-202ENST00000406335 TARBP1Q13395 1621 aaKnown RBP38.56■■■■□ 3.76
RHBDD3-202ENST00000406335 SOGA1O94964 1423 aa38.54■■■■□ 3.76
RHBDD3-202ENST00000406335 TDRD9Q8NDG6 1382 aaKnown RBP38.53■■■■□ 3.76
RHBDD3-202ENST00000406335 RAD54L2Q9Y4B4 1467 aa38.52■■■■□ 3.76
RHBDD3-202ENST00000406335 CHD1O14646 1710 aa38.49■■■■□ 3.75
RHBDD3-202ENST00000406335 CHMP7Q8WUX9 453 aaPredicted RBP38.43■■■■□ 3.74
RHBDD3-202ENST00000406335 ARAP1Q96P48 1450 aa38.4■■■■□ 3.74
RHBDD3-202ENST00000406335 SNAPC4Q5SXM2 1469 aa38.32■■■■□ 3.72
RHBDD3-202ENST00000406335 FGD5Q6ZNL6 1462 aa38.31■■■■□ 3.72
RHBDD3-202ENST00000406335 GRIN2BQ13224 1484 aa38.17■■■■□ 3.7
RHBDD3-202ENST00000406335 CUX1P39880 1505 aa38.16■■■■□ 3.7
RHBDD3-202ENST00000406335 MAGI1Q96QZ7 1491 aaPredicted RBP38.15■■■■□ 3.7
RHBDD3-202ENST00000406335 WDR97A6NE52 1622 aa38.15■■■■□ 3.7
RHBDD3-202ENST00000406335 SYNJ1O43426 1573 aa38.14■■■■□ 3.7
RHBDD3-202ENST00000406335 CLASP1Q7Z460 1538 aa38.07■■■■□ 3.69
RHBDD3-202ENST00000406335 SYNJ2O15056 1496 aa38.07■■■■□ 3.68
RHBDD3-202ENST00000406335 GAPVD1Q14C86 1478 aa38■■■■□ 3.67
RHBDD3-202ENST00000406335 SUPT5HO00267 1087 aaKnown RBP37.97■■■■□ 3.67
RHBDD3-202ENST00000406335 AEBP2Q6ZN18 517 aaPredicted RBP37.82■■■■□ 3.64
RHBDD3-202ENST00000406335 ABCA10Q8WWZ4 1543 aa37.82■■■■□ 3.64
RHBDD3-202ENST00000406335 PBRM1Q86U86 1689 aa37.8■■■■□ 3.64
RHBDD3-202ENST00000406335 WRNQ14191 1432 aaPredicted RBP eCLIP37.71■■■■□ 3.63
RHBDD3-202ENST00000406335 ABCA5Q8WWZ7 1642 aa37.69■■■■□ 3.62
RHBDD3-202ENST00000406335 GRIN2AQ12879 1464 aa37.64■■■■□ 3.62
RHBDD3-202ENST00000406335 ERCC6L2Q5T890 1561 aa37.51■■■■□ 3.59
RHBDD3-202ENST00000406335 FHAD1B1AJZ9 1412 aa37.5■■■■□ 3.59
RHBDD3-202ENST00000406335 NUP160Q12769 1436 aa37.48■■■■□ 3.59
RHBDD3-202ENST00000406335 ADAMTS12P58397 1594 aa37.47■■■■□ 3.59
RHBDD3-202ENST00000406335 CEP170Q5SW79 1584 aa37.45■■■■□ 3.59
RHBDD3-202ENST00000406335 TOP2BQ02880 1626 aa37.41■■■■□ 3.58
RHBDD3-202ENST00000406335 BIVM-ERCC5R4GMW8 1640 aa37.35■■■■□ 3.57
RHBDD3-202ENST00000406335 JPH4Q96JJ6 628 aa37.33■■■■□ 3.57
RHBDD3-202ENST00000406335 ERICH3Q5RHP9 1530 aa37.32■■■■□ 3.57
RHBDD3-202ENST00000406335 PRG4Q92954 1404 aaPredicted RBP37.3■■■■□ 3.56
RHBDD3-202ENST00000406335 NPM1P06748 294 aaKnown RBP eCLIP37.24■■■■□ 3.55
RHBDD3-202ENST00000406335 SHROOM2Q13796 1616 aa37.24■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms