RNA–Protein interactions for RNA: ENST00000406109.5

RPA3-204, Transcript of replication protein A3, humanhuman

TSL 3 BASIC

Gene RPA3, Length 434 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-204ENST00000406109 AEBP2Q6ZN18 517 aaPredicted RBP16.44■□□□□ 0.22
RPA3-204ENST00000406109 NISCHQ9Y2I1 1504 aa15.87■□□□□ 0.13
RPA3-204ENST00000406109 CHIC1Q5VXU3 224 aa15.45■□□□□ 0.06
RPA3-204ENST00000406109 ABCC9O60706 1549 aa14.55□□□□□ -0.08
RPA3-204ENST00000406109 CCDC180Q9P1Z9 1646 aa14.29□□□□□ -0.12
RPA3-204ENST00000406109 SENP3Q9H4L4 574 aaPredicted RBP14.01□□□□□ -0.17
RPA3-204ENST00000406109 DNAJC5BQ9UF47 199 aa13.97□□□□□ -0.17
RPA3-204ENST00000406109 PHF23Q9BUL5 403 aaPredicted RBP13.82□□□□□ -0.2
RPA3-204ENST00000406109 RB1CC1Q8TDY2 1594 aa13.71□□□□□ -0.21
RPA3-204ENST00000406109 NACADO15069 1562 aa13.58□□□□□ -0.23
RPA3-204ENST00000406109 PABPN1Q86U42 306 aaKnown RBP eCLIP13.54□□□□□ -0.24
RPA3-204ENST00000406109 UNC13AQ9UPW8 1703 aa13.47□□□□□ -0.25
RPA3-204ENST00000406109 DCAF8L2P0C7V8 631 aa13.45□□□□□ -0.26
RPA3-204ENST00000406109 BICRAQ9NZM4 1560 aa13.41□□□□□ -0.26
RPA3-204ENST00000406109 MYO15BQ96JP2 1530 aa13.34□□□□□ -0.27
RPA3-204ENST00000406109 CC2D2AQ9P2K1 1620 aa13.14□□□□□ -0.31
RPA3-204ENST00000406109 CECR2Q9BXF3 1484 aa13.13□□□□□ -0.31
RPA3-204ENST00000406109 SHROOM4Q9ULL8 1493 aa13.12□□□□□ -0.31
RPA3-204ENST00000406109 FOXD1Q16676 465 aa13.1□□□□□ -0.31
RPA3-204ENST00000406109 ZCCHC6Q5VYS8 1495 aaKnown RBP13.1□□□□□ -0.31
RPA3-204ENST00000406109 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.31
RPA3-204ENST00000406109 EIF4G1Q04637 1599 aaKnown RBP13.05□□□□□ -0.32
RPA3-204ENST00000406109 SCRIBQ14160 1630 aa13.02□□□□□ -0.32
RPA3-204ENST00000406109 DNAJC5Q9H3Z4 198 aa12.94□□□□□ -0.34
RPA3-204ENST00000406109 CUX2O14529 1486 aa12.62□□□□□ -0.39
RPA3-204ENST00000406109 NCAPD3P42695 1498 aa12.58□□□□□ -0.4
RPA3-204ENST00000406109 ERCC6Q03468 1493 aa12.53□□□□□ -0.4
RPA3-204ENST00000406109 ATAD2BQ9ULI0 1458 aa12.51□□□□□ -0.41
RPA3-204ENST00000406109 NESP48681 1621 aa12.47□□□□□ -0.41
RPA3-204ENST00000406109 HMGXB3Q12766 1538 aa12.43□□□□□ -0.42
RPA3-204ENST00000406109 SMARCA2P51531 1590 aa12.41□□□□□ -0.42
RPA3-204ENST00000406109 SMARCA4P51532 1647 aa12.4□□□□□ -0.42
RPA3-204ENST00000406109 THOC2Q8NI27 1593 aaKnown RBP12.36□□□□□ -0.43
RPA3-204ENST00000406109 BAZ1BQ9UIG0 1483 aaKnown RBP12.33□□□□□ -0.44
RPA3-204ENST00000406109 PEG3Q9GZU2 1588 aa12.31□□□□□ -0.44
RPA3-204ENST00000406109 BAZ1AQ9NRL2 1556 aaPredicted RBP12.29□□□□□ -0.44
RPA3-204ENST00000406109 LAMC3Q9Y6N6 1575 aa12.29□□□□□ -0.44
RPA3-204ENST00000406109 MSH5O43196 834 aa12.28□□□□□ -0.44
RPA3-204ENST00000406109 KIF21AQ7Z4S6 1674 aa12.27□□□□□ -0.45
RPA3-204ENST00000406109 PLPPR3Q6T4P5 718 aa12.27□□□□□ -0.45
RPA3-204ENST00000406109 POTEDQ86YR6 584 aa12.25□□□□□ -0.45
RPA3-204ENST00000406109 MROH2BQ7Z745 1585 aa12.23□□□□□ -0.45
RPA3-204ENST00000406109 PDS5BQ9NTI5 1447 aa12.22□□□□□ -0.45
RPA3-204ENST00000406109 TRIM41Q8WV44 630 aa12.22□□□□□ -0.45
RPA3-204ENST00000406109 PIAS4Q8N2W9 510 aaPredicted RBP12.2□□□□□ -0.46
RPA3-204ENST00000406109 CADPSQ9ULU8 1353 aa12.18□□□□□ -0.46
RPA3-204ENST00000406109 PPP6R1Q9UPN7 881 aa12.15□□□□□ -0.46
RPA3-204ENST00000406109 MRC2Q9UBG0 1479 aa12.14□□□□□ -0.47
RPA3-204ENST00000406109 WDR62O43379 1518 aa12.13□□□□□ -0.47
RPA3-204ENST00000406109 ADRA2BP18089 450 aa12.1□□□□□ -0.47
RPA3-204ENST00000406109 WIZO95785 1651 aa12.06□□□□□ -0.48
RPA3-204ENST00000406109 CEP164Q9UPV0 1460 aa12.03□□□□□ -0.48
RPA3-204ENST00000406109 FANCD2Q9BXW9 1451 aa12.02□□□□□ -0.48
RPA3-204ENST00000406109 OSCARQ8IYS5 282 aa12.02□□□□□ -0.49
RPA3-204ENST00000406109 CFTRP13569 1480 aa12□□□□□ -0.49
RPA3-204ENST00000406109 URB2Q14146 1524 aaKnown RBP11.96□□□□□ -0.49
RPA3-204ENST00000406109 RSF1Q96T23 1441 aaPredicted RBP11.91□□□□□ -0.5
RPA3-204ENST00000406109 RIMBP3CA6NJZ7 1639 aa11.89□□□□□ -0.51
RPA3-204ENST00000406109 RIMBP3BA6NNM3 1639 aa11.89□□□□□ -0.51
RPA3-204ENST00000406109 RIMBP3Q9UFD9 1639 aa11.89□□□□□ -0.51
RPA3-204ENST00000406109 TOP2AP11388 1531 aaKnown RBP11.86□□□□□ -0.51
RPA3-204ENST00000406109 ZNF608Q9ULD9 1512 aaPredicted RBP11.86□□□□□ -0.51
RPA3-204ENST00000406109 ARHGEF11O15085 1522 aa11.83□□□□□ -0.52
RPA3-204ENST00000406109 IFT140Q96RY7 1462 aa11.81□□□□□ -0.52
RPA3-204ENST00000406109 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
RPA3-204ENST00000406109 CCDC88BA6NC98 1476 aa11.77□□□□□ -0.52
RPA3-204ENST00000406109 TOPBP1Q92547 1522 aa11.77□□□□□ -0.52
RPA3-204ENST00000406109 CYB5RLQ6IPT4 315 aa11.76□□□□□ -0.53
RPA3-204ENST00000406109 EIF4G3O43432 1585 aaKnown RBP11.74□□□□□ -0.53
RPA3-204ENST00000406109 AQRO60306 1485 aaKnown RBP eCLIP11.72□□□□□ -0.537e-7■■□□□ 14.1
RPA3-204ENST00000406109 ARAP1Q96P48 1450 aa11.71□□□□□ -0.53
RPA3-204ENST00000406109 TARBP1Q13395 1621 aaKnown RBP11.71□□□□□ -0.54
RPA3-204ENST00000406109 CHD1O14646 1710 aa11.7□□□□□ -0.54
RPA3-204ENST00000406109 ABCC8Q09428 1581 aa11.69□□□□□ -0.54
RPA3-204ENST00000406109 DNMBPQ6XZF7 1577 aa11.69□□□□□ -0.54
RPA3-204ENST00000406109 TRHP20396 242 aaPredicted RBP11.66□□□□□ -0.54
RPA3-204ENST00000406109 POLA1P09884 1462 aaPredicted RBP11.64□□□□□ -0.55
RPA3-204ENST00000406109 FBLN2P98095 1184 aa11.63□□□□□ -0.55
RPA3-204ENST00000406109 RAD54L2Q9Y4B4 1467 aa11.62□□□□□ -0.55
RPA3-204ENST00000406109 TDRD9Q8NDG6 1382 aaKnown RBP11.6□□□□□ -0.55
RPA3-204ENST00000406109 CLASP1Q7Z460 1538 aa11.59□□□□□ -0.55
RPA3-204ENST00000406109 SOGA1O94964 1423 aa11.57□□□□□ -0.56
RPA3-204ENST00000406109 SNAPC4Q5SXM2 1469 aa11.56□□□□□ -0.56
RPA3-204ENST00000406109 FGD5Q6ZNL6 1462 aa11.52□□□□□ -0.56
RPA3-204ENST00000406109 CHMP7Q8WUX9 453 aaPredicted RBP11.52□□□□□ -0.57
RPA3-204ENST00000406109 MAGI1Q96QZ7 1491 aaPredicted RBP11.51□□□□□ -0.57
RPA3-204ENST00000406109 WDR97A6NE52 1622 aa11.51□□□□□ -0.57
RPA3-204ENST00000406109 CUX1P39880 1505 aa11.5□□□□□ -0.57
RPA3-204ENST00000406109 SYNJ1O43426 1573 aa11.5□□□□□ -0.57
RPA3-204ENST00000406109 SYNJ2O15056 1496 aa11.49□□□□□ -0.57
RPA3-204ENST00000406109 GRIN2BQ13224 1484 aa11.49□□□□□ -0.57
RPA3-204ENST00000406109 GAPVD1Q14C86 1478 aa11.46□□□□□ -0.57
RPA3-204ENST00000406109 PBRM1Q86U86 1689 aa11.42□□□□□ -0.58
RPA3-204ENST00000406109 ERCC6L2Q5T890 1561 aa11.41□□□□□ -0.58
RPA3-204ENST00000406109 ABCA10Q8WWZ4 1543 aa11.4□□□□□ -0.59
RPA3-204ENST00000406109 ABCA5Q8WWZ7 1642 aa11.38□□□□□ -0.59
RPA3-204ENST00000406109 GRIN2AQ12879 1464 aa11.35□□□□□ -0.59
RPA3-204ENST00000406109 NUP160Q12769 1436 aa11.35□□□□□ -0.59
RPA3-204ENST00000406109 CEP170Q5SW79 1584 aa11.34□□□□□ -0.59
RPA3-204ENST00000406109 SHROOM2Q13796 1616 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms