RNA–Protein interactions for RNA: ENST00000405578.8

RPAIN-204, Transcript of RPA interacting protein, humanhuman

TSL 2 BASIC

Gene RPAIN, Length 1,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-204ENST00000405578 NISCHQ9Y2I1 1504 aa25.62■■□□□ 1.69
RPAIN-204ENST00000405578 ABCC9O60706 1549 aa23.77■■□□□ 1.4
RPAIN-204ENST00000405578 CCDC180Q9P1Z9 1646 aa23.31■■□□□ 1.32
RPAIN-204ENST00000405578 DNAJC5BQ9UF47 199 aa22.69■■□□□ 1.22
RPAIN-204ENST00000405578 RB1CC1Q8TDY2 1594 aa22.4■■□□□ 1.18
RPAIN-204ENST00000405578 NACADO15069 1562 aa22.09■■□□□ 1.13
RPAIN-204ENST00000405578 UNC13AQ9UPW8 1703 aa22.03■■□□□ 1.12
RPAIN-204ENST00000405578 PABPN1Q86U42 306 aaKnown RBP eCLIP21.98■■□□□ 1.11
RPAIN-204ENST00000405578 DCAF8L2P0C7V8 631 aa21.8■■□□□ 1.08
RPAIN-204ENST00000405578 BICRAQ9NZM4 1560 aa21.78■■□□□ 1.08
RPAIN-204ENST00000405578 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
RPAIN-204ENST00000405578 CC2D2AQ9P2K1 1620 aa21.47■■□□□ 1.03
RPAIN-204ENST00000405578 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.02
RPAIN-204ENST00000405578 SHROOM4Q9ULL8 1493 aa21.38■■□□□ 1.01
RPAIN-204ENST00000405578 EIF4G1Q04637 1599 aaKnown RBP21.28■■□□□ 1
RPAIN-204ENST00000405578 SCRIBQ14160 1630 aa21.21■□□□□ 0.99
RPAIN-204ENST00000405578 DNAJC5Q9H3Z4 198 aa21.2■□□□□ 0.98
RPAIN-204ENST00000405578 ZCCHC6Q5VYS8 1495 aaKnown RBP21.13■□□□□ 0.97
RPAIN-204ENST00000405578 DCAF1Q9Y4B6 1507 aa21.11■□□□□ 0.97
RPAIN-204ENST00000405578 CUX2O14529 1486 aa20.68■□□□□ 0.9
RPAIN-204ENST00000405578 ERCC6Q03468 1493 aa20.56■□□□□ 0.88
RPAIN-204ENST00000405578 NCAPD3P42695 1498 aa20.35■□□□□ 0.85
RPAIN-204ENST00000405578 NESP48681 1621 aa20.27■□□□□ 0.84
RPAIN-204ENST00000405578 ATAD2BQ9ULI0 1458 aa20.24■□□□□ 0.83
RPAIN-204ENST00000405578 THOC2Q8NI27 1593 aaKnown RBP20.23■□□□□ 0.83
RPAIN-204ENST00000405578 HMGXB3Q12766 1538 aa20.22■□□□□ 0.83
RPAIN-204ENST00000405578 SMARCA2P51531 1590 aa20.19■□□□□ 0.82
RPAIN-204ENST00000405578 SMARCA4P51532 1647 aa20.16■□□□□ 0.82
RPAIN-204ENST00000405578 TRIM41Q8WV44 630 aa20.11■□□□□ 0.81
RPAIN-204ENST00000405578 KIF21AQ7Z4S6 1674 aa20.09■□□□□ 0.81
RPAIN-204ENST00000405578 LAMC3Q9Y6N6 1575 aa20.04■□□□□ 0.8
RPAIN-204ENST00000405578 BAZ1BQ9UIG0 1483 aaKnown RBP20.04■□□□□ 0.8
RPAIN-204ENST00000405578 BAZ1AQ9NRL2 1556 aaPredicted RBP19.94■□□□□ 0.78
RPAIN-204ENST00000405578 PEG3Q9GZU2 1588 aa19.92■□□□□ 0.78
RPAIN-204ENST00000405578 PDS5BQ9NTI5 1447 aa19.88■□□□□ 0.77
RPAIN-204ENST00000405578 MRC2Q9UBG0 1479 aa19.79■□□□□ 0.76
RPAIN-204ENST00000405578 WDR62O43379 1518 aa19.78■□□□□ 0.76
RPAIN-204ENST00000405578 MROH2BQ7Z745 1585 aa19.75■□□□□ 0.75
RPAIN-204ENST00000405578 CADPSQ9ULU8 1353 aa19.7■□□□□ 0.74
RPAIN-204ENST00000405578 CEP164Q9UPV0 1460 aa19.61■□□□□ 0.73
RPAIN-204ENST00000405578 OSCARQ8IYS5 282 aa19.57■□□□□ 0.72
RPAIN-204ENST00000405578 WIZO95785 1651 aa19.54■□□□□ 0.72
RPAIN-204ENST00000405578 FANCD2Q9BXW9 1451 aa19.53■□□□□ 0.72
RPAIN-204ENST00000405578 RIMBP3CA6NJZ7 1639 aa19.52■□□□□ 0.72
RPAIN-204ENST00000405578 RIMBP3BA6NNM3 1639 aa19.52■□□□□ 0.72
RPAIN-204ENST00000405578 RIMBP3Q9UFD9 1639 aa19.52■□□□□ 0.72
RPAIN-204ENST00000405578 AEBP2Q6ZN18 517 aaPredicted RBP19.52■□□□□ 0.72
RPAIN-204ENST00000405578 URB2Q14146 1524 aaKnown RBP19.42■□□□□ 0.7
RPAIN-204ENST00000405578 CFTRP13569 1480 aa19.39■□□□□ 0.69
RPAIN-204ENST00000405578 ARHGEF11O15085 1522 aa19.36■□□□□ 0.69
RPAIN-204ENST00000405578 PRDM2Q13029 1718 aa19.33■□□□□ 0.68
RPAIN-204ENST00000405578 ZNF608Q9ULD9 1512 aaPredicted RBP19.26■□□□□ 0.67
RPAIN-204ENST00000405578 TOP2AP11388 1531 aaKnown RBP19.22■□□□□ 0.67
RPAIN-204ENST00000405578 IFT140Q96RY7 1462 aa19.22■□□□□ 0.67
RPAIN-204ENST00000405578 CHD1O14646 1710 aa19.2■□□□□ 0.66
RPAIN-204ENST00000405578 EIF4G3O43432 1585 aaKnown RBP19.19■□□□□ 0.66
RPAIN-204ENST00000405578 CYB5RLQ6IPT4 315 aa19.18■□□□□ 0.66
RPAIN-204ENST00000405578 TRHP20396 242 aaPredicted RBP19.15■□□□□ 0.66
RPAIN-204ENST00000405578 ARAP1Q96P48 1450 aa19.14■□□□□ 0.65
RPAIN-204ENST00000405578 TOPBP1Q92547 1522 aa19.11■□□□□ 0.65
RPAIN-204ENST00000405578 RSF1Q96T23 1441 aaPredicted RBP19.1■□□□□ 0.65
RPAIN-204ENST00000405578 DNMBPQ6XZF7 1577 aa19.02■□□□□ 0.63
RPAIN-204ENST00000405578 TARBP1Q13395 1621 aaKnown RBP19.01■□□□□ 0.63
RPAIN-204ENST00000405578 ABCC8Q09428 1581 aa18.99■□□□□ 0.63
RPAIN-204ENST00000405578 AQRO60306 1485 aaKnown RBP eCLIP18.99■□□□□ 0.633e-7■■■□□ 18.2
RPAIN-204ENST00000405578 CCDC88BA6NC98 1476 aa18.97■□□□□ 0.63
RPAIN-204ENST00000405578 FBLN2P98095 1184 aa18.95■□□□□ 0.62
RPAIN-204ENST00000405578 CLASP1Q7Z460 1538 aa18.89■□□□□ 0.61
RPAIN-204ENST00000405578 POLA1P09884 1462 aaPredicted RBP18.87■□□□□ 0.61
RPAIN-204ENST00000405578 SYNJ1O43426 1573 aa18.82■□□□□ 0.6
RPAIN-204ENST00000405578 SNAPC4Q5SXM2 1469 aa18.82■□□□□ 0.6
RPAIN-204ENST00000405578 RAD54L2Q9Y4B4 1467 aa18.82■□□□□ 0.6
RPAIN-204ENST00000405578 SUPT5HO00267 1087 aaKnown RBP18.81■□□□□ 0.6
RPAIN-204ENST00000405578 TDRD9Q8NDG6 1382 aaKnown RBP18.78■□□□□ 0.6
RPAIN-204ENST00000405578 WDR97A6NE52 1622 aa18.76■□□□□ 0.59
RPAIN-204ENST00000405578 SOGA1O94964 1423 aa18.74■□□□□ 0.59
RPAIN-204ENST00000405578 MAGI1Q96QZ7 1491 aaPredicted RBP18.72■□□□□ 0.59
RPAIN-204ENST00000405578 CHIC1Q5VXU3 224 aa18.72■□□□□ 0.59
RPAIN-204ENST00000405578 CHMP7Q8WUX9 453 aaPredicted RBP18.7■□□□□ 0.58
RPAIN-204ENST00000405578 FGD5Q6ZNL6 1462 aa18.7■□□□□ 0.58
RPAIN-204ENST00000405578 PBRM1Q86U86 1689 aa18.69■□□□□ 0.58
RPAIN-204ENST00000405578 GAPVD1Q14C86 1478 aa18.68■□□□□ 0.58
RPAIN-204ENST00000405578 SYNJ2O15056 1496 aa18.66■□□□□ 0.58
RPAIN-204ENST00000405578 GRIN2BQ13224 1484 aa18.66■□□□□ 0.58
RPAIN-204ENST00000405578 CUX1P39880 1505 aa18.6■□□□□ 0.57
RPAIN-204ENST00000405578 ERCC6L2Q5T890 1561 aa18.56■□□□□ 0.56
RPAIN-204ENST00000405578 KIF13AQ9H1H9 1805 aa18.54■□□□□ 0.56
RPAIN-204ENST00000405578 ABCA5Q8WWZ7 1642 aa18.52■□□□□ 0.55
RPAIN-204ENST00000405578 CEP170Q5SW79 1584 aa18.47■□□□□ 0.55
RPAIN-204ENST00000405578 GRIN2AQ12879 1464 aa18.44■□□□□ 0.54
RPAIN-204ENST00000405578 ABCA10Q8WWZ4 1543 aa18.43■□□□□ 0.54
RPAIN-204ENST00000405578 SHROOM2Q13796 1616 aa18.42■□□□□ 0.54
RPAIN-204ENST00000405578 ADAMTS12P58397 1594 aa18.42■□□□□ 0.54
RPAIN-204ENST00000405578 NUP160Q12769 1436 aa18.38■□□□□ 0.53
RPAIN-204ENST00000405578 DIP2BQ9P265 1576 aa18.25■□□□□ 0.51
RPAIN-204ENST00000405578 FHAD1B1AJZ9 1412 aa18.25■□□□□ 0.51
RPAIN-204ENST00000405578 KDM6BO15054 1643 aa18.25■□□□□ 0.51
RPAIN-204ENST00000405578 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
RPAIN-204ENST00000405578 TSPOAP1O95153 1857 aa18.24■□□□□ 0.51
RPAIN-204ENST00000405578 PRG4Q92954 1404 aaPredicted RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms