RNA–Protein interactions for RNA: ENST00000400911.7

VAMP1-203, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best) BASIC

Gene VAMP1, Length 1,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-203ENST00000400911 NISCHQ9Y2I1 1504 aa36.75■■■■□ 3.47
VAMP1-203ENST00000400911 ABCC9O60706 1549 aa33.42■■■□□ 2.94
VAMP1-203ENST00000400911 CCDC180Q9P1Z9 1646 aa32.91■■■□□ 2.86
VAMP1-203ENST00000400911 DNAJC5BQ9UF47 199 aa31.7■■■□□ 2.67
VAMP1-203ENST00000400911 RB1CC1Q8TDY2 1594 aa31.57■■■□□ 2.64
VAMP1-203ENST00000400911 DCAF8L2P0C7V8 631 aa31.35■■■□□ 2.61
VAMP1-203ENST00000400911 NACADO15069 1562 aa31.3■■■□□ 2.6
VAMP1-203ENST00000400911 PABPN1Q86U42 306 aaKnown RBP eCLIP31.18■■■□□ 2.58
VAMP1-203ENST00000400911 MYO15BQ96JP2 1530 aa30.78■■■□□ 2.52
VAMP1-203ENST00000400911 UNC13AQ9UPW8 1703 aa30.69■■■□□ 2.5
VAMP1-203ENST00000400911 BICRAQ9NZM4 1560 aa30.68■■■□□ 2.5
VAMP1-203ENST00000400911 ZCCHC6Q5VYS8 1495 aaKnown RBP30.38■■■□□ 2.45
VAMP1-203ENST00000400911 DCAF1Q9Y4B6 1507 aa30.29■■■□□ 2.44
VAMP1-203ENST00000400911 SHROOM4Q9ULL8 1493 aa30.2■■■□□ 2.43
VAMP1-203ENST00000400911 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
VAMP1-203ENST00000400911 SCRIBQ14160 1630 aa30.11■■■□□ 2.41
VAMP1-203ENST00000400911 CC2D2AQ9P2K1 1620 aa30.08■■■□□ 2.41
VAMP1-203ENST00000400911 EIF4G1Q04637 1599 aaKnown RBP29.95■■■□□ 2.39
VAMP1-203ENST00000400911 DNAJC5Q9H3Z4 198 aa29.27■■■□□ 2.28
VAMP1-203ENST00000400911 NCAPD3P42695 1498 aa28.98■■■□□ 2.23
VAMP1-203ENST00000400911 ERCC6Q03468 1493 aa28.86■■■□□ 2.21
VAMP1-203ENST00000400911 ATAD2BQ9ULI0 1458 aa28.86■■■□□ 2.21
VAMP1-203ENST00000400911 CUX2O14529 1486 aa28.85■■■□□ 2.21
VAMP1-203ENST00000400911 SMARCA2P51531 1590 aa28.69■■■□□ 2.18
VAMP1-203ENST00000400911 SMARCA4P51532 1647 aa28.65■■■□□ 2.18
VAMP1-203ENST00000400911 HMGXB3Q12766 1538 aa28.64■■■□□ 2.18
VAMP1-203ENST00000400911 NESP48681 1621 aa28.62■■■□□ 2.17
VAMP1-203ENST00000400911 BAZ1BQ9UIG0 1483 aaKnown RBP28.53■■■□□ 2.16
VAMP1-203ENST00000400911 BAZ1AQ9NRL2 1556 aaPredicted RBP28.5■■■□□ 2.15
VAMP1-203ENST00000400911 PEG3Q9GZU2 1588 aa28.37■■■□□ 2.13
VAMP1-203ENST00000400911 MROH2BQ7Z745 1585 aa28.33■■■□□ 2.13
VAMP1-203ENST00000400911 LAMC3Q9Y6N6 1575 aa28.27■■■□□ 2.12
VAMP1-203ENST00000400911 THOC2Q8NI27 1593 aaKnown RBP28.25■■■□□ 2.11
VAMP1-203ENST00000400911 PDS5BQ9NTI5 1447 aa28.23■■■□□ 2.11
VAMP1-203ENST00000400911 CADPSQ9ULU8 1353 aa28.12■■■□□ 2.09
VAMP1-203ENST00000400911 KIF21AQ7Z4S6 1674 aa28.07■■■□□ 2.08
VAMP1-203ENST00000400911 MRC2Q9UBG0 1479 aa27.96■■■□□ 2.07
VAMP1-203ENST00000400911 TRIM41Q8WV44 630 aa27.92■■■□□ 2.06
VAMP1-203ENST00000400911 WIZO95785 1651 aa27.91■■■□□ 2.06
VAMP1-203ENST00000400911 WDR62O43379 1518 aa27.87■■■□□ 2.05
VAMP1-203ENST00000400911 CEP164Q9UPV0 1460 aa27.79■■■□□ 2.04
VAMP1-203ENST00000400911 FANCD2Q9BXW9 1451 aa27.77■■■□□ 2.04
VAMP1-203ENST00000400911 CFTRP13569 1480 aa27.71■■■□□ 2.03
VAMP1-203ENST00000400911 RSF1Q96T23 1441 aaPredicted RBP27.7■■■□□ 2.03
VAMP1-203ENST00000400911 OSCARQ8IYS5 282 aa27.62■■■□□ 2.01
VAMP1-203ENST00000400911 TOP2AP11388 1531 aaKnown RBP27.55■■■□□ 2
VAMP1-203ENST00000400911 URB2Q14146 1524 aaKnown RBP27.55■■■□□ 2
VAMP1-203ENST00000400911 CCDC88BA6NC98 1476 aa27.33■■□□□ 1.97
VAMP1-203ENST00000400911 ZNF608Q9ULD9 1512 aaPredicted RBP27.28■■□□□ 1.96
VAMP1-203ENST00000400911 IFT140Q96RY7 1462 aa27.26■■□□□ 1.95
VAMP1-203ENST00000400911 TOPBP1Q92547 1522 aa27.19■■□□□ 1.94
VAMP1-203ENST00000400911 RIMBP3CA6NJZ7 1639 aa27.12■■□□□ 1.93
VAMP1-203ENST00000400911 RIMBP3BA6NNM3 1639 aa27.12■■□□□ 1.93
VAMP1-203ENST00000400911 RIMBP3Q9UFD9 1639 aa27.12■■□□□ 1.93
VAMP1-203ENST00000400911 PRDM2Q13029 1718 aa27.1■■□□□ 1.93
VAMP1-203ENST00000400911 ABCC8Q09428 1581 aa27.09■■□□□ 1.93
VAMP1-203ENST00000400911 ARHGEF11O15085 1522 aa27.06■■□□□ 1.92
VAMP1-203ENST00000400911 AQRO60306 1485 aaKnown RBP eCLIP27.04■■□□□ 1.92
VAMP1-203ENST00000400911 CYB5RLQ6IPT4 315 aa27.03■■□□□ 1.92
VAMP1-203ENST00000400911 DNMBPQ6XZF7 1577 aa27.01■■□□□ 1.92
VAMP1-203ENST00000400911 FBLN2P98095 1184 aa26.99■■□□□ 1.91
VAMP1-203ENST00000400911 EIF4G3O43432 1585 aaKnown RBP26.99■■□□□ 1.91
VAMP1-203ENST00000400911 TARBP1Q13395 1621 aaKnown RBP26.91■■□□□ 1.9
VAMP1-203ENST00000400911 POLA1P09884 1462 aaPredicted RBP26.91■■□□□ 1.9
VAMP1-203ENST00000400911 RAD54L2Q9Y4B4 1467 aa26.87■■□□□ 1.89
VAMP1-203ENST00000400911 TDRD9Q8NDG6 1382 aaKnown RBP26.85■■□□□ 1.89
VAMP1-203ENST00000400911 SOGA1O94964 1423 aa26.83■■□□□ 1.89
VAMP1-203ENST00000400911 TRHP20396 242 aaPredicted RBP26.81■■□□□ 1.88
VAMP1-203ENST00000400911 ARAP1Q96P48 1450 aa26.79■■□□□ 1.88
VAMP1-203ENST00000400911 CHD1O14646 1710 aa26.77■■□□□ 1.88
VAMP1-203ENST00000400911 CHMP7Q8WUX9 453 aaPredicted RBP26.72■■□□□ 1.87
VAMP1-203ENST00000400911 SNAPC4Q5SXM2 1469 aa26.69■■□□□ 1.86
VAMP1-203ENST00000400911 FGD5Q6ZNL6 1462 aa26.69■■□□□ 1.86
VAMP1-203ENST00000400911 CUX1P39880 1505 aa26.63■■□□□ 1.85
VAMP1-203ENST00000400911 GRIN2BQ13224 1484 aa26.59■■□□□ 1.85
VAMP1-203ENST00000400911 MAGI1Q96QZ7 1491 aaPredicted RBP26.58■■□□□ 1.85
VAMP1-203ENST00000400911 CLASP1Q7Z460 1538 aa26.56■■□□□ 1.84
VAMP1-203ENST00000400911 WDR97A6NE52 1622 aa26.55■■□□□ 1.84
VAMP1-203ENST00000400911 SYNJ2O15056 1496 aa26.52■■□□□ 1.84
VAMP1-203ENST00000400911 SYNJ1O43426 1573 aa26.51■■□□□ 1.83
VAMP1-203ENST00000400911 GAPVD1Q14C86 1478 aa26.47■■□□□ 1.83
VAMP1-203ENST00000400911 SUPT5HO00267 1087 aaKnown RBP26.39■■□□□ 1.82
VAMP1-203ENST00000400911 ABCA10Q8WWZ4 1543 aa26.37■■□□□ 1.81
VAMP1-203ENST00000400911 ABCA5Q8WWZ7 1642 aa26.28■■□□□ 1.8
VAMP1-203ENST00000400911 PBRM1Q86U86 1689 aa26.28■■□□□ 1.8
VAMP1-203ENST00000400911 WRNQ14191 1432 aaPredicted RBP eCLIP26.26■■□□□ 1.79
VAMP1-203ENST00000400911 GRIN2AQ12879 1464 aa26.23■■□□□ 1.79
VAMP1-203ENST00000400911 AEBP2Q6ZN18 517 aaPredicted RBP26.21■■□□□ 1.79
VAMP1-203ENST00000400911 ERCC6L2Q5T890 1561 aa26.18■■□□□ 1.78
VAMP1-203ENST00000400911 NUP160Q12769 1436 aa26.16■■□□□ 1.78
VAMP1-203ENST00000400911 FHAD1B1AJZ9 1412 aa26.13■■□□□ 1.77
VAMP1-203ENST00000400911 CEP170Q5SW79 1584 aa26.12■■□□□ 1.77
VAMP1-203ENST00000400911 ADAMTS12P58397 1594 aa26.11■■□□□ 1.77
VAMP1-203ENST00000400911 TOP2BQ02880 1626 aa26.06■■□□□ 1.76
VAMP1-203ENST00000400911 BIVM-ERCC5R4GMW8 1640 aa26.01■■□□□ 1.75
VAMP1-203ENST00000400911 ERICH3Q5RHP9 1530 aa26■■□□□ 1.75
VAMP1-203ENST00000400911 JPH4Q96JJ6 628 aa26■■□□□ 1.75
VAMP1-203ENST00000400911 PRG4Q92954 1404 aaPredicted RBP25.98■■□□□ 1.75
VAMP1-203ENST00000400911 SHROOM2Q13796 1616 aa25.97■■□□□ 1.75
VAMP1-203ENST00000400911 NPM1P06748 294 aaKnown RBP eCLIP25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms