RNA–Protein interactions for RNA: ENST00000398792.3

CDH23-204, Transcript of cadherin related 23, humanhuman

TSL 2

Gene CDH23, Length 1,649 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH23-204ENST00000398792 NISCHQ9Y2I1 1504 aa38.83■■■■□ 3.81
CDH23-204ENST00000398792 CCDC180Q9P1Z9 1646 aa34.15■■■■□ 3.06
CDH23-204ENST00000398792 ZCCHC6Q5VYS8 1495 aaKnown RBP32.59■■■□□ 2.81
CDH23-204ENST00000398792 ABCC9O60706 1549 aa32.5■■■□□ 2.79
CDH23-204ENST00000398792 DCAF1Q9Y4B6 1507 aa32.17■■■□□ 2.74
CDH23-204ENST00000398792 DCAF8L2P0C7V8 631 aa31.97■■■□□ 2.71
CDH23-204ENST00000398792 MYO15BQ96JP2 1530 aa31.95■■■□□ 2.7
CDH23-204ENST00000398792 NACADO15069 1562 aa31.84■■■□□ 2.69
CDH23-204ENST00000398792 RB1CC1Q8TDY2 1594 aa31.66■■■□□ 2.66
CDH23-204ENST00000398792 SHROOM4Q9ULL8 1493 aa31.27■■■□□ 2.6
CDH23-204ENST00000398792 SCRIBQ14160 1630 aa31.26■■■□□ 2.59
CDH23-204ENST00000398792 UNC13AQ9UPW8 1703 aa31.01■■■□□ 2.56
CDH23-204ENST00000398792 BICRAQ9NZM4 1560 aa30.7■■■□□ 2.51
CDH23-204ENST00000398792 PABPN1Q86U42 306 aaKnown RBP eCLIP30.47■■■□□ 2.47
CDH23-204ENST00000398792 CECR2Q9BXF3 1484 aa30.16■■■□□ 2.42
CDH23-204ENST00000398792 BAZ1AQ9NRL2 1556 aaPredicted RBP30.04■■■□□ 2.4
CDH23-204ENST00000398792 SMARCA4P51532 1647 aa29.97■■■□□ 2.39
CDH23-204ENST00000398792 MROH2BQ7Z745 1585 aa29.97■■■□□ 2.39
CDH23-204ENST00000398792 RSF1Q96T23 1441 aaPredicted RBP29.93■■■□□ 2.38
CDH23-204ENST00000398792 SUPT5HO00267 1087 aaKnown RBP29.84■■■□□ 2.37
CDH23-204ENST00000398792 EIF4G1Q04637 1599 aaKnown RBP29.81■■■□□ 2.36
CDH23-204ENST00000398792 WIZO95785 1651 aa29.71■■■□□ 2.35
CDH23-204ENST00000398792 PEG3Q9GZU2 1588 aa29.65■■■□□ 2.34
CDH23-204ENST00000398792 SMARCA2P51531 1590 aa29.55■■■□□ 2.32
CDH23-204ENST00000398792 ATAD2BQ9ULI0 1458 aa29.53■■■□□ 2.32
CDH23-204ENST00000398792 CC2D2AQ9P2K1 1620 aa29.45■■■□□ 2.31
CDH23-204ENST00000398792 TOP2AP11388 1531 aaKnown RBP29.44■■■□□ 2.3
CDH23-204ENST00000398792 BAZ1BQ9UIG0 1483 aaKnown RBP29.35■■■□□ 2.29
CDH23-204ENST00000398792 NCAPD3P42695 1498 aa29.35■■■□□ 2.29
CDH23-204ENST00000398792 HMGXB3Q12766 1538 aa29.34■■■□□ 2.29
CDH23-204ENST00000398792 CCDC88BA6NC98 1476 aa29.06■■■□□ 2.24
CDH23-204ENST00000398792 DNAJC5BQ9UF47 199 aa28.91■■■□□ 2.22
CDH23-204ENST00000398792 CFTRP13569 1480 aa28.59■■■□□ 2.17
CDH23-204ENST00000398792 CADPSQ9ULU8 1353 aa28.53■■■□□ 2.16
CDH23-204ENST00000398792 PRDM2Q13029 1718 aa28.52■■■□□ 2.16
CDH23-204ENST00000398792 LAMC3Q9Y6N6 1575 aa28.46■■■□□ 2.15
CDH23-204ENST00000398792 NESP48681 1621 aa28.41■■■□□ 2.14
CDH23-204ENST00000398792 CHIC1Q5VXU3 224 aa28.4■■■□□ 2.14
CDH23-204ENST00000398792 ABCC8Q09428 1581 aa28.33■■■□□ 2.13
CDH23-204ENST00000398792 FANCD2Q9BXW9 1451 aa28.24■■■□□ 2.11
CDH23-204ENST00000398792 WRNQ14191 1432 aaPredicted RBP eCLIP28.2■■■□□ 2.1
CDH23-204ENST00000398792 PDS5BQ9NTI5 1447 aa28.19■■■□□ 2.1
CDH23-204ENST00000398792 SYNJ1O43426 1573 aa28.14■■■□□ 2.09
CDH23-204ENST00000398792 KIF21AQ7Z4S6 1674 aa28.14■■■□□ 2.09
CDH23-204ENST00000398792 CEP164Q9UPV0 1460 aa28.13■■■□□ 2.09
CDH23-204ENST00000398792 TRIM41Q8WV44 630 aa28.11■■■□□ 2.09
CDH23-204ENST00000398792 BIVM-ERCC5R4GMW8 1640 aa28.08■■■□□ 2.09
CDH23-204ENST00000398792 CUX1P39880 1505 aa28.07■■■□□ 2.08
CDH23-204ENST00000398792 TOP2BQ02880 1626 aa28.07■■■□□ 2.08
CDH23-204ENST00000398792 DNMBPQ6XZF7 1577 aa27.97■■■□□ 2.07
CDH23-204ENST00000398792 URB2Q14146 1524 aaKnown RBP27.93■■■□□ 2.06
CDH23-204ENST00000398792 ERCC6Q03468 1493 aa27.92■■■□□ 2.06
CDH23-204ENST00000398792 TOPBP1Q92547 1522 aa27.91■■■□□ 2.06
CDH23-204ENST00000398792 MRC2Q9UBG0 1479 aa27.89■■■□□ 2.06
CDH23-204ENST00000398792 THOC2Q8NI27 1593 aaKnown RBP27.82■■■□□ 2.04
CDH23-204ENST00000398792 FGD5Q6ZNL6 1462 aa27.81■■■□□ 2.04
CDH23-204ENST00000398792 WDR62O43379 1518 aa27.79■■■□□ 2.04
CDH23-204ENST00000398792 POLA1P09884 1462 aaPredicted RBP27.75■■■□□ 2.03
CDH23-204ENST00000398792 SOGA1O94964 1423 aa27.68■■■□□ 2.02
CDH23-204ENST00000398792 EEA1Q15075 1411 aa27.61■■■□□ 2.01
CDH23-204ENST00000398792 RAD54L2Q9Y4B4 1467 aa27.6■■■□□ 2.01
CDH23-204ENST00000398792 WDR97A6NE52 1622 aa27.6■■■□□ 2.01
CDH23-204ENST00000398792 RUSC2Q8N2Y8 1516 aa27.6■■■□□ 2.01
CDH23-204ENST00000398792 ABCA10Q8WWZ4 1543 aa27.58■■■□□ 2.01
CDH23-204ENST00000398792 CUX2O14529 1486 aa27.56■■■□□ 2
CDH23-204ENST00000398792 TARBP1Q13395 1621 aaKnown RBP27.56■■■□□ 2
CDH23-204ENST00000398792 FAM9AQ8IZU1 332 aaPredicted RBP27.54■■■□□ 2
CDH23-204ENST00000398792 KIF27Q86VH2 1401 aa27.52■■■□□ 2
CDH23-204ENST00000398792 IFT140Q96RY7 1462 aa27.48■■□□□ 1.99
CDH23-204ENST00000398792 ABCA5Q8WWZ7 1642 aa27.43■■□□□ 1.98
CDH23-204ENST00000398792 CSRNP3Q8WYN3 585 aa27.38■■□□□ 1.97
CDH23-204ENST00000398792 TDRD9Q8NDG6 1382 aaKnown RBP27.33■■□□□ 1.97
CDH23-204ENST00000398792 GAPVD1Q14C86 1478 aa27.32■■□□□ 1.96
CDH23-204ENST00000398792 KIF21BO75037 1637 aa27.32■■□□□ 1.96
CDH23-204ENST00000398792 ZNF608Q9ULD9 1512 aaPredicted RBP27.31■■□□□ 1.96
CDH23-204ENST00000398792 EIF4G3O43432 1585 aaKnown RBP27.29■■□□□ 1.96
CDH23-204ENST00000398792 PBRM1Q86U86 1689 aa27.27■■□□□ 1.96
CDH23-204ENST00000398792 IGF1RP08069 1367 aa27.27■■□□□ 1.96
CDH23-204ENST00000398792 ERICH3Q5RHP9 1530 aa27.26■■□□□ 1.95
CDH23-204ENST00000398792 PRXQ9BXM0 1461 aa27.26■■□□□ 1.95
CDH23-204ENST00000398792 AQRO60306 1485 aaKnown RBP eCLIP27.24■■□□□ 1.95
CDH23-204ENST00000398792 LOC105371045A0A1W2PR82 267 aa27.23■■□□□ 1.95
CDH23-204ENST00000398792 CUL7Q14999 1698 aa27.22■■□□□ 1.95
CDH23-204ENST00000398792 GOLGA3Q08378 1498 aa27.21■■□□□ 1.95
CDH23-204ENST00000398792 GRIN2BQ13224 1484 aa27.18■■□□□ 1.94
CDH23-204ENST00000398792 RAPGEF2Q9Y4G8 1499 aa27.16■■□□□ 1.94
CDH23-204ENST00000398792 EHMT2Q96KQ7 1210 aa27.13■■□□□ 1.93
CDH23-204ENST00000398792 CARMIL1Q5VZK9 1371 aa27.13■■□□□ 1.93
CDH23-204ENST00000398792 ADAMTS12P58397 1594 aa27.11■■□□□ 1.93
CDH23-204ENST00000398792 SNAPC4Q5SXM2 1469 aa27.05■■□□□ 1.92
CDH23-204ENST00000398792 FHAD1B1AJZ9 1412 aa27.02■■□□□ 1.92
CDH23-204ENST00000398792 MAGI1Q96QZ7 1491 aaPredicted RBP27.02■■□□□ 1.92
CDH23-204ENST00000398792 TNIKQ9UKE5 1360 aa27.01■■□□□ 1.91
CDH23-204ENST00000398792 UBTFP17480 764 aaKnown RBP26.97■■□□□ 1.91
CDH23-204ENST00000398792 SYNJ2O15056 1496 aa26.91■■□□□ 1.9
CDH23-204ENST00000398792 CTTNBP2Q8WZ74 1663 aa26.86■■□□□ 1.89
CDH23-204ENST00000398792 GRIN2AQ12879 1464 aa26.86■■□□□ 1.89
CDH23-204ENST00000398792 CEP162Q5TB80 1403 aa26.85■■□□□ 1.89
CDH23-204ENST00000398792 CHD1O14646 1710 aa26.75■■□□□ 1.87
CDH23-204ENST00000398792 CHMP7Q8WUX9 453 aaPredicted RBP26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms