RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 NISCHQ9Y2I1 1504 aa29.47■■■□□ 2.31
TRIM39-204ENST00000396548 CCDC180Q9P1Z9 1646 aa25.84■■□□□ 1.73
TRIM39-204ENST00000396548 ZCCHC6Q5VYS8 1495 aaKnown RBP24.76■■□□□ 1.55
TRIM39-204ENST00000396548 DCAF1Q9Y4B6 1507 aa24.45■■□□□ 1.5
TRIM39-204ENST00000396548 ABCC9O60706 1549 aa24.35■■□□□ 1.49
TRIM39-204ENST00000396548 MYO15BQ96JP2 1530 aa24.22■■□□□ 1.47
TRIM39-204ENST00000396548 DCAF8L2P0C7V8 631 aa24.05■■□□□ 1.44
TRIM39-204ENST00000396548 NACADO15069 1562 aa24.03■■□□□ 1.44
TRIM39-204ENST00000396548 RB1CC1Q8TDY2 1594 aa23.82■■□□□ 1.4
TRIM39-204ENST00000396548 SHROOM4Q9ULL8 1493 aa23.74■■□□□ 1.39
TRIM39-204ENST00000396548 SCRIBQ14160 1630 aa23.62■■□□□ 1.37
TRIM39-204ENST00000396548 UNC13AQ9UPW8 1703 aa23.48■■□□□ 1.35
TRIM39-204ENST00000396548 BICRAQ9NZM4 1560 aa23.2■■□□□ 1.31
TRIM39-204ENST00000396548 CECR2Q9BXF3 1484 aa22.89■■□□□ 1.25
TRIM39-204ENST00000396548 PABPN1Q86U42 306 aaKnown RBP eCLIP22.89■■□□□ 1.25
TRIM39-204ENST00000396548 RSF1Q96T23 1441 aaPredicted RBP22.79■■□□□ 1.24
TRIM39-204ENST00000396548 MROH2BQ7Z745 1585 aa22.76■■□□□ 1.23
TRIM39-204ENST00000396548 BAZ1AQ9NRL2 1556 aaPredicted RBP22.74■■□□□ 1.23
TRIM39-204ENST00000396548 SUPT5HO00267 1087 aaKnown RBP22.73■■□□□ 1.23
TRIM39-204ENST00000396548 SMARCA4P51532 1647 aa22.7■■□□□ 1.22
TRIM39-204ENST00000396548 WIZO95785 1651 aa22.58■■□□□ 1.2
TRIM39-204ENST00000396548 PEG3Q9GZU2 1588 aa22.5■■□□□ 1.19
TRIM39-204ENST00000396548 EIF4G1Q04637 1599 aaKnown RBP22.44■■□□□ 1.18
TRIM39-204ENST00000396548 TOP2AP11388 1531 aaKnown RBP22.34■■□□□ 1.17
TRIM39-204ENST00000396548 ATAD2BQ9ULI0 1458 aa22.32■■□□□ 1.16
TRIM39-204ENST00000396548 SMARCA2P51531 1590 aa22.3■■□□□ 1.16
TRIM39-204ENST00000396548 NCAPD3P42695 1498 aa22.17■■□□□ 1.14
TRIM39-204ENST00000396548 HMGXB3Q12766 1538 aa22.16■■□□□ 1.14
TRIM39-204ENST00000396548 CC2D2AQ9P2K1 1620 aa22.14■■□□□ 1.13
TRIM39-204ENST00000396548 BAZ1BQ9UIG0 1483 aaKnown RBP22.13■■□□□ 1.13
TRIM39-204ENST00000396548 CCDC88BA6NC98 1476 aa22.08■■□□□ 1.13
TRIM39-204ENST00000396548 CHIC1Q5VXU3 224 aa21.82■■□□□ 1.08
TRIM39-204ENST00000396548 CFTRP13569 1480 aa21.64■■□□□ 1.06
TRIM39-204ENST00000396548 DNAJC5BQ9UF47 199 aa21.64■■□□□ 1.05
TRIM39-204ENST00000396548 PRDM2Q13029 1718 aa21.63■■□□□ 1.05
TRIM39-204ENST00000396548 ABCC8Q09428 1581 aa21.55■■□□□ 1.04
TRIM39-204ENST00000396548 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
TRIM39-204ENST00000396548 LAMC3Q9Y6N6 1575 aa21.44■■□□□ 1.02
TRIM39-204ENST00000396548 TRIM41Q8WV44 630 aa21.42■■□□□ 1.02
TRIM39-204ENST00000396548 NESP48681 1621 aa21.4■■□□□ 1.02
TRIM39-204ENST00000396548 SYNJ1O43426 1573 aa21.4■■□□□ 1.02
TRIM39-204ENST00000396548 WRNQ14191 1432 aaPredicted RBP eCLIP21.39■■□□□ 1.02
TRIM39-204ENST00000396548 BIVM-ERCC5R4GMW8 1640 aa21.36■■□□□ 1.01
TRIM39-204ENST00000396548 TOP2BQ02880 1626 aa21.34■■□□□ 1.01
TRIM39-204ENST00000396548 CUX1P39880 1505 aa21.3■■□□□ 1
TRIM39-204ENST00000396548 FANCD2Q9BXW9 1451 aa21.3■■□□□ 1
TRIM39-204ENST00000396548 KIF21AQ7Z4S6 1674 aa21.21■□□□□ 0.99
TRIM39-204ENST00000396548 PDS5BQ9NTI5 1447 aa21.18■□□□□ 0.98
TRIM39-204ENST00000396548 CEP164Q9UPV0 1460 aa21.16■□□□□ 0.98
TRIM39-204ENST00000396548 DNMBPQ6XZF7 1577 aa21.14■□□□□ 0.97
TRIM39-204ENST00000396548 SOGA1O94964 1423 aa21.11■□□□□ 0.97
TRIM39-204ENST00000396548 URB2Q14146 1524 aaKnown RBP21.09■□□□□ 0.97
TRIM39-204ENST00000396548 TOPBP1Q92547 1522 aa21.08■□□□□ 0.97
TRIM39-204ENST00000396548 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
TRIM39-204ENST00000396548 EEA1Q15075 1411 aa21.03■□□□□ 0.96
TRIM39-204ENST00000396548 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
TRIM39-204ENST00000396548 POLA1P09884 1462 aaPredicted RBP20.97■□□□□ 0.95
TRIM39-204ENST00000396548 MRC2Q9UBG0 1479 aa20.97■□□□□ 0.95
TRIM39-204ENST00000396548 FAM9AQ8IZU1 332 aaPredicted RBP20.95■□□□□ 0.94
TRIM39-204ENST00000396548 WDR97A6NE52 1622 aa20.93■□□□□ 0.94
TRIM39-204ENST00000396548 WDR62O43379 1518 aa20.93■□□□□ 0.94
TRIM39-204ENST00000396548 LOC105371045A0A1W2PR82 267 aa20.93■□□□□ 0.94
TRIM39-204ENST00000396548 THOC2Q8NI27 1593 aaKnown RBP20.93■□□□□ 0.94
TRIM39-204ENST00000396548 ABCA10Q8WWZ4 1543 aa20.89■□□□□ 0.93
TRIM39-204ENST00000396548 RAD54L2Q9Y4B4 1467 aa20.87■□□□□ 0.93
TRIM39-204ENST00000396548 CSRNP3Q8WYN3 585 aa20.87■□□□□ 0.93
TRIM39-204ENST00000396548 TARBP1Q13395 1621 aaKnown RBP20.86■□□□□ 0.93
TRIM39-204ENST00000396548 KIF21BO75037 1637 aa20.85■□□□□ 0.93
TRIM39-204ENST00000396548 KIF27Q86VH2 1401 aa20.84■□□□□ 0.93
TRIM39-204ENST00000396548 ERCC6Q03468 1493 aa20.84■□□□□ 0.93
TRIM39-204ENST00000396548 CUX2O14529 1486 aa20.82■□□□□ 0.92
TRIM39-204ENST00000396548 ABCA5Q8WWZ7 1642 aa20.78■□□□□ 0.92
TRIM39-204ENST00000396548 PRXQ9BXM0 1461 aa20.77■□□□□ 0.92
TRIM39-204ENST00000396548 IGF1RP08069 1367 aa20.73■□□□□ 0.91
TRIM39-204ENST00000396548 GOLGA3Q08378 1498 aa20.72■□□□□ 0.91
TRIM39-204ENST00000396548 ERICH3Q5RHP9 1530 aa20.72■□□□□ 0.91
TRIM39-204ENST00000396548 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
TRIM39-204ENST00000396548 RAPGEF2Q9Y4G8 1499 aa20.69■□□□□ 0.9
TRIM39-204ENST00000396548 TNIKQ9UKE5 1360 aa20.65■□□□□ 0.9
TRIM39-204ENST00000396548 CUL7Q14999 1698 aa20.63■□□□□ 0.89
TRIM39-204ENST00000396548 GAPVD1Q14C86 1478 aa20.63■□□□□ 0.89
TRIM39-204ENST00000396548 PBRM1Q86U86 1689 aa20.62■□□□□ 0.89
TRIM39-204ENST00000396548 TDRD9Q8NDG6 1382 aaKnown RBP20.62■□□□□ 0.89
TRIM39-204ENST00000396548 EHMT2Q96KQ7 1210 aa20.6■□□□□ 0.89
TRIM39-204ENST00000396548 ZNF608Q9ULD9 1512 aaPredicted RBP20.58■□□□□ 0.89
TRIM39-204ENST00000396548 CARMIL1Q5VZK9 1371 aa20.57■□□□□ 0.88
TRIM39-204ENST00000396548 EIF4G3O43432 1585 aaKnown RBP20.55■□□□□ 0.88
TRIM39-204ENST00000396548 AQRO60306 1485 aaKnown RBP eCLIP20.55■□□□□ 0.881e-6■■■■■ 29.2
TRIM39-204ENST00000396548 CEP162Q5TB80 1403 aa20.51■□□□□ 0.87
TRIM39-204ENST00000396548 GRIN2BQ13224 1484 aa20.49■□□□□ 0.87
TRIM39-204ENST00000396548 ADAMTS12P58397 1594 aa20.48■□□□□ 0.87
TRIM39-204ENST00000396548 UBTFP17480 764 aaKnown RBP20.48■□□□□ 0.87
TRIM39-204ENST00000396548 FHAD1B1AJZ9 1412 aa20.42■□□□□ 0.86
TRIM39-204ENST00000396548 CTTNBP2Q8WZ74 1663 aa20.4■□□□□ 0.86
TRIM39-204ENST00000396548 SNAPC4Q5SXM2 1469 aa20.37■□□□□ 0.85
TRIM39-204ENST00000396548 MAGI1Q96QZ7 1491 aaPredicted RBP20.36■□□□□ 0.85
TRIM39-204ENST00000396548 CLIP1P30622 1438 aa20.35■□□□□ 0.85
TRIM39-204ENST00000396548 SYNJ2O15056 1496 aa20.28■□□□□ 0.84
TRIM39-204ENST00000396548 ARAP1Q96P48 1450 aa20.27■□□□□ 0.84
TRIM39-204ENST00000396548 ARHGAP35Q9NRY4 1499 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms