RNA–Protein interactions for RNA: ENST00000396215.7

LDHC-202, Transcript of lactate dehydrogenase C, humanhuman

TSL 1 (best)

Gene LDHC, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-202ENST00000396215 NISCHQ9Y2I1 1504 aa25.11■■□□□ 1.61
LDHC-202ENST00000396215 AEBP2Q6ZN18 517 aaPredicted RBP24.31■■□□□ 1.48
LDHC-202ENST00000396215 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
LDHC-202ENST00000396215 ABCC9O60706 1549 aa23.25■■□□□ 1.31
LDHC-202ENST00000396215 CCDC180Q9P1Z9 1646 aa22.79■■□□□ 1.24
LDHC-202ENST00000396215 DNAJC5BQ9UF47 199 aa22.39■■□□□ 1.17
LDHC-202ENST00000396215 RB1CC1Q8TDY2 1594 aa21.95■■□□□ 1.1
LDHC-202ENST00000396215 NACADO15069 1562 aa21.7■■□□□ 1.06
LDHC-202ENST00000396215 PABPN1Q86U42 306 aaKnown RBP eCLIP21.55■■□□□ 1.04
LDHC-202ENST00000396215 UNC13AQ9UPW8 1703 aa21.43■■□□□ 1.02
LDHC-202ENST00000396215 BICRAQ9NZM4 1560 aa21.36■■□□□ 1.01
LDHC-202ENST00000396215 MYO15BQ96JP2 1530 aa21.29■■□□□ 1
LDHC-202ENST00000396215 DCAF8L2P0C7V8 631 aa21.28■■□□□ 1
LDHC-202ENST00000396215 SHROOM4Q9ULL8 1493 aa21.08■□□□□ 0.97
LDHC-202ENST00000396215 CECR2Q9BXF3 1484 aa21.05■□□□□ 0.96
LDHC-202ENST00000396215 DNAJC5Q9H3Z4 198 aa21.02■□□□□ 0.96
LDHC-202ENST00000396215 CC2D2AQ9P2K1 1620 aa21.02■□□□□ 0.96
LDHC-202ENST00000396215 EIF4G1Q04637 1599 aaKnown RBP20.85■□□□□ 0.93
LDHC-202ENST00000396215 DCAF1Q9Y4B6 1507 aa20.78■□□□□ 0.92
LDHC-202ENST00000396215 SENP3Q9H4L4 574 aaPredicted RBP20.71■□□□□ 0.91
LDHC-202ENST00000396215 ZCCHC6Q5VYS8 1495 aaKnown RBP20.69■□□□□ 0.9
LDHC-202ENST00000396215 SCRIBQ14160 1630 aa20.61■□□□□ 0.89
LDHC-202ENST00000396215 PHF23Q9BUL5 403 aaPredicted RBP20.47■□□□□ 0.87
LDHC-202ENST00000396215 CUX2O14529 1486 aa20.37■□□□□ 0.85
LDHC-202ENST00000396215 ERCC6Q03468 1493 aa20.11■□□□□ 0.81
LDHC-202ENST00000396215 NCAPD3P42695 1498 aa20.06■□□□□ 0.8
LDHC-202ENST00000396215 ATAD2BQ9ULI0 1458 aa19.87■□□□□ 0.77
LDHC-202ENST00000396215 HMGXB3Q12766 1538 aa19.83■□□□□ 0.77
LDHC-202ENST00000396215 NESP48681 1621 aa19.82■□□□□ 0.76
LDHC-202ENST00000396215 SMARCA2P51531 1590 aa19.78■□□□□ 0.76
LDHC-202ENST00000396215 THOC2Q8NI27 1593 aaKnown RBP19.78■□□□□ 0.76
LDHC-202ENST00000396215 TRIM41Q8WV44 630 aa19.71■□□□□ 0.75
LDHC-202ENST00000396215 SMARCA4P51532 1647 aa19.68■□□□□ 0.74
LDHC-202ENST00000396215 LAMC3Q9Y6N6 1575 aa19.66■□□□□ 0.74
LDHC-202ENST00000396215 BAZ1BQ9UIG0 1483 aaKnown RBP19.6■□□□□ 0.73
LDHC-202ENST00000396215 PEG3Q9GZU2 1588 aa19.57■□□□□ 0.72
LDHC-202ENST00000396215 PDS5BQ9NTI5 1447 aa19.56■□□□□ 0.72
LDHC-202ENST00000396215 KIF21AQ7Z4S6 1674 aa19.55■□□□□ 0.72
LDHC-202ENST00000396215 BAZ1AQ9NRL2 1556 aaPredicted RBP19.52■□□□□ 0.71
LDHC-202ENST00000396215 MRC2Q9UBG0 1479 aa19.41■□□□□ 0.7
LDHC-202ENST00000396215 WDR62O43379 1518 aa19.41■□□□□ 0.7
LDHC-202ENST00000396215 CADPSQ9ULU8 1353 aa19.39■□□□□ 0.69
LDHC-202ENST00000396215 OSCARQ8IYS5 282 aa19.32■□□□□ 0.68
LDHC-202ENST00000396215 MROH2BQ7Z745 1585 aa19.3■□□□□ 0.68
LDHC-202ENST00000396215 FOXD1Q16676 465 aa19.28■□□□□ 0.68
LDHC-202ENST00000396215 CEP164Q9UPV0 1460 aa19.19■□□□□ 0.66
LDHC-202ENST00000396215 FANCD2Q9BXW9 1451 aa19.13■□□□□ 0.65
LDHC-202ENST00000396215 RIMBP3CA6NJZ7 1639 aa19.1■□□□□ 0.65
LDHC-202ENST00000396215 RIMBP3BA6NNM3 1639 aa19.1■□□□□ 0.65
LDHC-202ENST00000396215 RIMBP3Q9UFD9 1639 aa19.1■□□□□ 0.65
LDHC-202ENST00000396215 CFTRP13569 1480 aa19.06■□□□□ 0.64
LDHC-202ENST00000396215 WIZO95785 1651 aa19.01■□□□□ 0.63
LDHC-202ENST00000396215 URB2Q14146 1524 aaKnown RBP19.01■□□□□ 0.63
LDHC-202ENST00000396215 ARHGEF11O15085 1522 aa18.99■□□□□ 0.63
LDHC-202ENST00000396215 IFT140Q96RY7 1462 aa18.87■□□□□ 0.61
LDHC-202ENST00000396215 ZNF608Q9ULD9 1512 aaPredicted RBP18.85■□□□□ 0.61
LDHC-202ENST00000396215 CYB5RLQ6IPT4 315 aa18.85■□□□□ 0.61
LDHC-202ENST00000396215 TRHP20396 242 aaPredicted RBP18.78■□□□□ 0.6
LDHC-202ENST00000396215 PRDM2Q13029 1718 aa18.77■□□□□ 0.6
LDHC-202ENST00000396215 TOP2AP11388 1531 aaKnown RBP18.77■□□□□ 0.6
LDHC-202ENST00000396215 ARAP1Q96P48 1450 aa18.77■□□□□ 0.59
LDHC-202ENST00000396215 PLPPR3Q6T4P5 718 aa18.74■□□□□ 0.59
LDHC-202ENST00000396215 RSF1Q96T23 1441 aaPredicted RBP18.73■□□□□ 0.59
LDHC-202ENST00000396215 EIF4G3O43432 1585 aaKnown RBP18.72■□□□□ 0.59
LDHC-202ENST00000396215 TOPBP1Q92547 1522 aa18.71■□□□□ 0.59
LDHC-202ENST00000396215 ABCC8Q09428 1581 aa18.68■□□□□ 0.58
LDHC-202ENST00000396215 CHD1O14646 1710 aa18.66■□□□□ 0.58
LDHC-202ENST00000396215 TARBP1Q13395 1621 aaKnown RBP18.61■□□□□ 0.57
LDHC-202ENST00000396215 AQRO60306 1485 aaKnown RBP eCLIP18.61■□□□□ 0.57
LDHC-202ENST00000396215 DNMBPQ6XZF7 1577 aa18.59■□□□□ 0.57
LDHC-202ENST00000396215 CCDC88BA6NC98 1476 aa18.57■□□□□ 0.56
LDHC-202ENST00000396215 FBLN2P98095 1184 aa18.53■□□□□ 0.56
LDHC-202ENST00000396215 CLASP1Q7Z460 1538 aa18.51■□□□□ 0.55
LDHC-202ENST00000396215 POLA1P09884 1462 aaPredicted RBP18.48■□□□□ 0.55
LDHC-202ENST00000396215 WDR97A6NE52 1622 aa18.43■□□□□ 0.54
LDHC-202ENST00000396215 SYNJ1O43426 1573 aa18.41■□□□□ 0.54
LDHC-202ENST00000396215 SNAPC4Q5SXM2 1469 aa18.39■□□□□ 0.54
LDHC-202ENST00000396215 RAD54L2Q9Y4B4 1467 aa18.39■□□□□ 0.54
LDHC-202ENST00000396215 TDRD9Q8NDG6 1382 aaKnown RBP18.39■□□□□ 0.53
LDHC-202ENST00000396215 SOGA1O94964 1423 aa18.38■□□□□ 0.53
LDHC-202ENST00000396215 MAGI1Q96QZ7 1491 aaPredicted RBP18.38■□□□□ 0.53
LDHC-202ENST00000396215 CHMP7Q8WUX9 453 aaPredicted RBP18.37■□□□□ 0.53
LDHC-202ENST00000396215 SYNJ2O15056 1496 aa18.32■□□□□ 0.52
LDHC-202ENST00000396215 GAPVD1Q14C86 1478 aa18.32■□□□□ 0.52
LDHC-202ENST00000396215 GRIN2BQ13224 1484 aa18.3■□□□□ 0.52
LDHC-202ENST00000396215 FGD5Q6ZNL6 1462 aa18.26■□□□□ 0.51
LDHC-202ENST00000396215 PPP6R1Q9UPN7 881 aa18.19■□□□□ 0.5
LDHC-202ENST00000396215 CUX1P39880 1505 aa18.17■□□□□ 0.5
LDHC-202ENST00000396215 ADRA2BP18089 450 aa18.15■□□□□ 0.5
LDHC-202ENST00000396215 PBRM1Q86U86 1689 aa18.15■□□□□ 0.5
LDHC-202ENST00000396215 ERCC6L2Q5T890 1561 aa18.12■□□□□ 0.49
LDHC-202ENST00000396215 KIF13AQ9H1H9 1805 aa18.09■□□□□ 0.49
LDHC-202ENST00000396215 PIAS4Q8N2W9 510 aaPredicted RBP18.08■□□□□ 0.48
LDHC-202ENST00000396215 ABCA10Q8WWZ4 1543 aa18.08■□□□□ 0.48
LDHC-202ENST00000396215 ABCA5Q8WWZ7 1642 aa18.07■□□□□ 0.48
LDHC-202ENST00000396215 CEP170Q5SW79 1584 aa18.07■□□□□ 0.48
LDHC-202ENST00000396215 NUP160Q12769 1436 aa18.06■□□□□ 0.48
LDHC-202ENST00000396215 GRIN2AQ12879 1464 aa18.06■□□□□ 0.48
LDHC-202ENST00000396215 SHROOM2Q13796 1616 aa18.04■□□□□ 0.48
LDHC-202ENST00000396215 ADAMTS12P58397 1594 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms