RNA–Protein interactions for RNA: ENST00000395963.2

CCR9-203, Transcript of C-C motif chemokine receptor 9, humanhuman

TSL 1 (best) BASIC

Gene CCR9, Length 2,512 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCR9-203ENST00000395963 NISCHQ9Y2I1 1504 aa20.73■□□□□ 0.91
CCR9-203ENST00000395963 CCDC180Q9P1Z9 1646 aa18.39■□□□□ 0.53
CCR9-203ENST00000395963 ZCCHC6Q5VYS8 1495 aaKnown RBP17.39■□□□□ 0.38
CCR9-203ENST00000395963 DCAF1Q9Y4B6 1507 aa17.34■□□□□ 0.37
CCR9-203ENST00000395963 MYO15BQ96JP2 1530 aa17.29■□□□□ 0.36
CCR9-203ENST00000395963 ABCC9O60706 1549 aa17.27■□□□□ 0.36
CCR9-203ENST00000395963 NACADO15069 1562 aa17.14■□□□□ 0.33
CCR9-203ENST00000395963 RB1CC1Q8TDY2 1594 aa17.03■□□□□ 0.32
CCR9-203ENST00000395963 DCAF8L2P0C7V8 631 aa16.82■□□□□ 0.28
CCR9-203ENST00000395963 SCRIBQ14160 1630 aa16.57■□□□□ 0.24
CCR9-203ENST00000395963 SHROOM4Q9ULL8 1493 aa16.55■□□□□ 0.24
CCR9-203ENST00000395963 UNC13AQ9UPW8 1703 aa16.55■□□□□ 0.24
CCR9-203ENST00000395963 BICRAQ9NZM4 1560 aa16.4■□□□□ 0.22
CCR9-203ENST00000395963 PABPN1Q86U42 306 aaKnown RBP eCLIP16.1■□□□□ 0.17
CCR9-203ENST00000395963 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
CCR9-203ENST00000395963 SMARCA4P51532 1647 aa16■□□□□ 0.15
CCR9-203ENST00000395963 CECR2Q9BXF3 1484 aa15.96■□□□□ 0.15
CCR9-203ENST00000395963 EIF4G1Q04637 1599 aaKnown RBP15.95■□□□□ 0.14
CCR9-203ENST00000395963 PEG3Q9GZU2 1588 aa15.94■□□□□ 0.14
CCR9-203ENST00000395963 RSF1Q96T23 1441 aaPredicted RBP15.89■□□□□ 0.13
CCR9-203ENST00000395963 MROH2BQ7Z745 1585 aa15.89■□□□□ 0.13
CCR9-203ENST00000395963 SMARCA2P51531 1590 aa15.87■□□□□ 0.13
CCR9-203ENST00000395963 HMGXB3Q12766 1538 aa15.78■□□□□ 0.12
CCR9-203ENST00000395963 ATAD2BQ9ULI0 1458 aa15.78■□□□□ 0.12
CCR9-203ENST00000395963 NCAPD3P42695 1498 aa15.77■□□□□ 0.11
CCR9-203ENST00000395963 CC2D2AQ9P2K1 1620 aa15.74■□□□□ 0.11
CCR9-203ENST00000395963 WIZO95785 1651 aa15.73■□□□□ 0.11
CCR9-203ENST00000395963 TOP2AP11388 1531 aaKnown RBP15.72■□□□□ 0.11
CCR9-203ENST00000395963 BAZ1BQ9UIG0 1483 aaKnown RBP15.67■□□□□ 0.1
CCR9-203ENST00000395963 SUPT5HO00267 1087 aaKnown RBP15.59■□□□□ 0.09
CCR9-203ENST00000395963 CCDC88BA6NC98 1476 aa15.43■□□□□ 0.06
CCR9-203ENST00000395963 DNAJC5BQ9UF47 199 aa15.34■□□□□ 0.05
CCR9-203ENST00000395963 PRDM2Q13029 1718 aa15.32■□□□□ 0.04
CCR9-203ENST00000395963 LAMC3Q9Y6N6 1575 aa15.32■□□□□ 0.04
CCR9-203ENST00000395963 CFTRP13569 1480 aa15.3■□□□□ 0.04
CCR9-203ENST00000395963 CADPSQ9ULU8 1353 aa15.27■□□□□ 0.04
CCR9-203ENST00000395963 PDS5BQ9NTI5 1447 aa15.15■□□□□ 0.02
CCR9-203ENST00000395963 FANCD2Q9BXW9 1451 aa15.08■□□□□ 0
CCR9-203ENST00000395963 ABCC8Q09428 1581 aa15.06■□□□□ 0
CCR9-203ENST00000395963 CEP164Q9UPV0 1460 aa15.05■□□□□ 0
CCR9-203ENST00000395963 NESP48681 1621 aa15.05■□□□□ 0
CCR9-203ENST00000395963 BIVM-ERCC5R4GMW8 1640 aa15□□□□□ -0.01
CCR9-203ENST00000395963 WRNQ14191 1432 aaPredicted RBP eCLIP15□□□□□ -0.01
CCR9-203ENST00000395963 KIF21AQ7Z4S6 1674 aa14.99□□□□□ -0.01
CCR9-203ENST00000395963 TOP2BQ02880 1626 aa14.98□□□□□ -0.01
CCR9-203ENST00000395963 DNMBPQ6XZF7 1577 aa14.98□□□□□ -0.01
CCR9-203ENST00000395963 MRC2Q9UBG0 1479 aa14.95□□□□□ -0.02
CCR9-203ENST00000395963 WDR62O43379 1518 aa14.92□□□□□ -0.02
CCR9-203ENST00000395963 ERCC6Q03468 1493 aa14.92□□□□□ -0.02
CCR9-203ENST00000395963 CHIC1Q5VXU3 224 aa14.91□□□□□ -0.02
CCR9-203ENST00000395963 CUX1P39880 1505 aa14.91□□□□□ -0.02
CCR9-203ENST00000395963 SYNJ1O43426 1573 aa14.9□□□□□ -0.02
CCR9-203ENST00000395963 THOC2Q8NI27 1593 aaKnown RBP14.9□□□□□ -0.02
CCR9-203ENST00000395963 TOPBP1Q92547 1522 aa14.89□□□□□ -0.03
CCR9-203ENST00000395963 URB2Q14146 1524 aaKnown RBP14.87□□□□□ -0.03
CCR9-203ENST00000395963 WDR97A6NE52 1622 aa14.84□□□□□ -0.03
CCR9-203ENST00000395963 TRIM41Q8WV44 630 aa14.84□□□□□ -0.03
CCR9-203ENST00000395963 EEA1Q15075 1411 aa14.81□□□□□ -0.04
CCR9-203ENST00000395963 FGD5Q6ZNL6 1462 aa14.8□□□□□ -0.04
CCR9-203ENST00000395963 POLA1P09884 1462 aaPredicted RBP14.78□□□□□ -0.04
CCR9-203ENST00000395963 CUX2O14529 1486 aa14.76□□□□□ -0.05
CCR9-203ENST00000395963 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
CCR9-203ENST00000395963 IFT140Q96RY7 1462 aa14.76□□□□□ -0.05
CCR9-203ENST00000395963 TARBP1Q13395 1621 aaKnown RBP14.72□□□□□ -0.05
CCR9-203ENST00000395963 SOGA1O94964 1423 aa14.71□□□□□ -0.05
CCR9-203ENST00000395963 KIF27Q86VH2 1401 aa14.69□□□□□ -0.06
CCR9-203ENST00000395963 ABCA5Q8WWZ7 1642 aa14.66□□□□□ -0.06
CCR9-203ENST00000395963 ERICH3Q5RHP9 1530 aa14.62□□□□□ -0.07
CCR9-203ENST00000395963 RAD54L2Q9Y4B4 1467 aa14.62□□□□□ -0.07
CCR9-203ENST00000395963 CUL7Q14999 1698 aa14.59□□□□□ -0.07
CCR9-203ENST00000395963 GAPVD1Q14C86 1478 aa14.57□□□□□ -0.08
CCR9-203ENST00000395963 EIF4G3O43432 1585 aaKnown RBP14.56□□□□□ -0.08
CCR9-203ENST00000395963 KIF21BO75037 1637 aa14.56□□□□□ -0.08
CCR9-203ENST00000395963 GRIN2BQ13224 1484 aa14.56□□□□□ -0.08
CCR9-203ENST00000395963 PBRM1Q86U86 1689 aa14.56□□□□□ -0.08
CCR9-203ENST00000395963 CSRNP3Q8WYN3 585 aa14.52□□□□□ -0.08
CCR9-203ENST00000395963 MAGI1Q96QZ7 1491 aaPredicted RBP14.52□□□□□ -0.09
CCR9-203ENST00000395963 PRXQ9BXM0 1461 aa14.51□□□□□ -0.09
CCR9-203ENST00000395963 IGF1RP08069 1367 aa14.5□□□□□ -0.09
CCR9-203ENST00000395963 RUSC2Q8N2Y8 1516 aa14.49□□□□□ -0.09
CCR9-203ENST00000395963 ZNF608Q9ULD9 1512 aaPredicted RBP14.49□□□□□ -0.09
CCR9-203ENST00000395963 TDRD9Q8NDG6 1382 aaKnown RBP14.48□□□□□ -0.09
CCR9-203ENST00000395963 ADAMTS12P58397 1594 aa14.48□□□□□ -0.09
CCR9-203ENST00000395963 FHAD1B1AJZ9 1412 aa14.47□□□□□ -0.09
CCR9-203ENST00000395963 GOLGA3Q08378 1498 aa14.46□□□□□ -0.09
CCR9-203ENST00000395963 AQRO60306 1485 aaKnown RBP eCLIP14.45□□□□□ -0.1
CCR9-203ENST00000395963 RAPGEF2Q9Y4G8 1499 aa14.45□□□□□ -0.1
CCR9-203ENST00000395963 CARMIL1Q5VZK9 1371 aa14.44□□□□□ -0.1
CCR9-203ENST00000395963 SYNJ2O15056 1496 aa14.41□□□□□ -0.1
CCR9-203ENST00000395963 SNAPC4Q5SXM2 1469 aa14.41□□□□□ -0.1
CCR9-203ENST00000395963 TNIKQ9UKE5 1360 aa14.35□□□□□ -0.11
CCR9-203ENST00000395963 GRIN2AQ12879 1464 aa14.35□□□□□ -0.11
CCR9-203ENST00000395963 FAM9AQ8IZU1 332 aaPredicted RBP14.34□□□□□ -0.11
CCR9-203ENST00000395963 CTTNBP2Q8WZ74 1663 aa14.33□□□□□ -0.11
CCR9-203ENST00000395963 NUP160Q12769 1436 aa14.3□□□□□ -0.12
CCR9-203ENST00000395963 CHD1O14646 1710 aa14.27□□□□□ -0.13
CCR9-203ENST00000395963 KIAA0586Q9BVV6 1533 aa14.27□□□□□ -0.13
CCR9-203ENST00000395963 CHMP7Q8WUX9 453 aaPredicted RBP14.25□□□□□ -0.13
CCR9-203ENST00000395963 EFCAB5A4FU69 1503 aa14.25□□□□□ -0.13
CCR9-203ENST00000395963 IQGAP2Q13576 1575 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms