RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 NISCHQ9Y2I1 1504 aa22.09■■□□□ 1.13
ATG4A-205ENST00000394892 CCDC180Q9P1Z9 1646 aa19.6■□□□□ 0.73
ATG4A-205ENST00000394892 ABCC9O60706 1549 aa19.59■□□□□ 0.73
ATG4A-205ENST00000394892 RB1CC1Q8TDY2 1594 aa18.6■□□□□ 0.57
ATG4A-205ENST00000394892 DCAF8L2P0C7V8 631 aa18.56■□□□□ 0.56
ATG4A-205ENST00000394892 NACADO15069 1562 aa18.55■□□□□ 0.56
ATG4A-205ENST00000394892 DNAJC5BQ9UF47 199 aa18.47■□□□□ 0.55
ATG4A-205ENST00000394892 MYO15BQ96JP2 1530 aa18.39■□□□□ 0.53
ATG4A-205ENST00000394892 ZCCHC6Q5VYS8 1495 aaKnown RBP18.35■□□□□ 0.53
ATG4A-205ENST00000394892 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
ATG4A-205ENST00000394892 DCAF1Q9Y4B6 1507 aa18.22■□□□□ 0.51
ATG4A-205ENST00000394892 BICRAQ9NZM4 1560 aa18.19■□□□□ 0.5
ATG4A-205ENST00000394892 UNC13AQ9UPW8 1703 aa18.15■□□□□ 0.5
ATG4A-205ENST00000394892 SCRIBQ14160 1630 aa17.96■□□□□ 0.47
ATG4A-205ENST00000394892 SHROOM4Q9ULL8 1493 aa17.83■□□□□ 0.45
ATG4A-205ENST00000394892 EIF4G1Q04637 1599 aaKnown RBP17.66■□□□□ 0.42
ATG4A-205ENST00000394892 CECR2Q9BXF3 1484 aa17.65■□□□□ 0.42
ATG4A-205ENST00000394892 CC2D2AQ9P2K1 1620 aa17.65■□□□□ 0.42
ATG4A-205ENST00000394892 NCAPD3P42695 1498 aa17.21■□□□□ 0.35
ATG4A-205ENST00000394892 DNAJC5Q9H3Z4 198 aa17.2■□□□□ 0.34
ATG4A-205ENST00000394892 ATAD2BQ9ULI0 1458 aa17.19■□□□□ 0.34
ATG4A-205ENST00000394892 SMARCA4P51532 1647 aa17.14■□□□□ 0.33
ATG4A-205ENST00000394892 MROH2BQ7Z745 1585 aa17.06■□□□□ 0.32
ATG4A-205ENST00000394892 BAZ1AQ9NRL2 1556 aaPredicted RBP17.06■□□□□ 0.32
ATG4A-205ENST00000394892 SMARCA2P51531 1590 aa17.05■□□□□ 0.32
ATG4A-205ENST00000394892 HMGXB3Q12766 1538 aa17.03■□□□□ 0.32
ATG4A-205ENST00000394892 AEBP2Q6ZN18 517 aaPredicted RBP17.03■□□□□ 0.32
ATG4A-205ENST00000394892 PEG3Q9GZU2 1588 aa16.99■□□□□ 0.31
ATG4A-205ENST00000394892 ERCC6Q03468 1493 aa16.96■□□□□ 0.31
ATG4A-205ENST00000394892 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
ATG4A-205ENST00000394892 CUX2O14529 1486 aa16.95■□□□□ 0.3
ATG4A-205ENST00000394892 NESP48681 1621 aa16.92■□□□□ 0.3
ATG4A-205ENST00000394892 WIZO95785 1651 aa16.8■□□□□ 0.28
ATG4A-205ENST00000394892 RSF1Q96T23 1441 aaPredicted RBP16.79■□□□□ 0.28
ATG4A-205ENST00000394892 CADPSQ9ULU8 1353 aa16.69■□□□□ 0.26
ATG4A-205ENST00000394892 LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
ATG4A-205ENST00000394892 THOC2Q8NI27 1593 aaKnown RBP16.62■□□□□ 0.25
ATG4A-205ENST00000394892 PDS5BQ9NTI5 1447 aa16.62■□□□□ 0.25
ATG4A-205ENST00000394892 TOP2AP11388 1531 aaKnown RBP16.6■□□□□ 0.25
ATG4A-205ENST00000394892 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
ATG4A-205ENST00000394892 CFTRP13569 1480 aa16.54■□□□□ 0.24
ATG4A-205ENST00000394892 MRC2Q9UBG0 1479 aa16.48■□□□□ 0.23
ATG4A-205ENST00000394892 CCDC88BA6NC98 1476 aa16.48■□□□□ 0.23
ATG4A-205ENST00000394892 FANCD2Q9BXW9 1451 aa16.48■□□□□ 0.23
ATG4A-205ENST00000394892 WDR62O43379 1518 aa16.44■□□□□ 0.22
ATG4A-205ENST00000394892 CEP164Q9UPV0 1460 aa16.43■□□□□ 0.22
ATG4A-205ENST00000394892 TRIM41Q8WV44 630 aa16.39■□□□□ 0.21
ATG4A-205ENST00000394892 URB2Q14146 1524 aaKnown RBP16.38■□□□□ 0.21
ATG4A-205ENST00000394892 OSCARQ8IYS5 282 aa16.23■□□□□ 0.19
ATG4A-205ENST00000394892 TOPBP1Q92547 1522 aa16.19■□□□□ 0.18
ATG4A-205ENST00000394892 ZNF608Q9ULD9 1512 aaPredicted RBP16.16■□□□□ 0.18
ATG4A-205ENST00000394892 SUPT5HO00267 1087 aaKnown RBP16.16■□□□□ 0.18
ATG4A-205ENST00000394892 PRDM2Q13029 1718 aa16.16■□□□□ 0.18
ATG4A-205ENST00000394892 IFT140Q96RY7 1462 aa16.11■□□□□ 0.17
ATG4A-205ENST00000394892 DNMBPQ6XZF7 1577 aa16.09■□□□□ 0.17
ATG4A-205ENST00000394892 ABCC8Q09428 1581 aa16.07■□□□□ 0.16
ATG4A-205ENST00000394892 POLA1P09884 1462 aaPredicted RBP16.05■□□□□ 0.16
ATG4A-205ENST00000394892 CHIC1Q5VXU3 224 aa16.05■□□□□ 0.16
ATG4A-205ENST00000394892 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.161e-6■■■■■ 33.8
ATG4A-205ENST00000394892 RAD54L2Q9Y4B4 1467 aa16.03■□□□□ 0.16
ATG4A-205ENST00000394892 TARBP1Q13395 1621 aaKnown RBP16.02■□□□□ 0.16
ATG4A-205ENST00000394892 CUX1P39880 1505 aa16■□□□□ 0.15
ATG4A-205ENST00000394892 SOGA1O94964 1423 aa15.97■□□□□ 0.15
ATG4A-205ENST00000394892 TDRD9Q8NDG6 1382 aaKnown RBP15.97■□□□□ 0.15
ATG4A-205ENST00000394892 FGD5Q6ZNL6 1462 aa15.97■□□□□ 0.15
ATG4A-205ENST00000394892 EIF4G3O43432 1585 aaKnown RBP15.96■□□□□ 0.15
ATG4A-205ENST00000394892 RIMBP3CA6NJZ7 1639 aa15.89■□□□□ 0.13
ATG4A-205ENST00000394892 RIMBP3BA6NNM3 1639 aa15.89■□□□□ 0.13
ATG4A-205ENST00000394892 RIMBP3Q9UFD9 1639 aa15.89■□□□□ 0.13
ATG4A-205ENST00000394892 ARHGEF11O15085 1522 aa15.85■□□□□ 0.13
ATG4A-205ENST00000394892 CYB5RLQ6IPT4 315 aa15.84■□□□□ 0.13
ATG4A-205ENST00000394892 FBLN2P98095 1184 aa15.82■□□□□ 0.12
ATG4A-205ENST00000394892 SNAPC4Q5SXM2 1469 aa15.82■□□□□ 0.12
ATG4A-205ENST00000394892 ABCA10Q8WWZ4 1543 aa15.79■□□□□ 0.12
ATG4A-205ENST00000394892 GRIN2BQ13224 1484 aa15.78■□□□□ 0.12
ATG4A-205ENST00000394892 WRNQ14191 1432 aaPredicted RBP eCLIP15.77■□□□□ 0.12
ATG4A-205ENST00000394892 WDR97A6NE52 1622 aa15.77■□□□□ 0.12
ATG4A-205ENST00000394892 TRHP20396 242 aaPredicted RBP15.77■□□□□ 0.12
ATG4A-205ENST00000394892 SYNJ1O43426 1573 aa15.76■□□□□ 0.11
ATG4A-205ENST00000394892 CHD1O14646 1710 aa15.76■□□□□ 0.11
ATG4A-205ENST00000394892 GAPVD1Q14C86 1478 aa15.76■□□□□ 0.11
ATG4A-205ENST00000394892 MAGI1Q96QZ7 1491 aaPredicted RBP15.74■□□□□ 0.11
ATG4A-205ENST00000394892 CHMP7Q8WUX9 453 aaPredicted RBP15.73■□□□□ 0.11
ATG4A-205ENST00000394892 TOP2BQ02880 1626 aa15.72■□□□□ 0.11
ATG4A-205ENST00000394892 ABCA5Q8WWZ7 1642 aa15.72■□□□□ 0.11
ATG4A-205ENST00000394892 SYNJ2O15056 1496 aa15.71■□□□□ 0.1
ATG4A-205ENST00000394892 BIVM-ERCC5R4GMW8 1640 aa15.7■□□□□ 0.1
ATG4A-205ENST00000394892 CLASP1Q7Z460 1538 aa15.69■□□□□ 0.1
ATG4A-205ENST00000394892 ARAP1Q96P48 1450 aa15.68■□□□□ 0.1
ATG4A-205ENST00000394892 PBRM1Q86U86 1689 aa15.63■□□□□ 0.09
ATG4A-205ENST00000394892 GRIN2AQ12879 1464 aa15.59■□□□□ 0.09
ATG4A-205ENST00000394892 ADAMTS12P58397 1594 aa15.58■□□□□ 0.08
ATG4A-205ENST00000394892 FHAD1B1AJZ9 1412 aa15.57■□□□□ 0.08
ATG4A-205ENST00000394892 NUP160Q12769 1436 aa15.57■□□□□ 0.08
ATG4A-205ENST00000394892 ERICH3Q5RHP9 1530 aa15.55■□□□□ 0.08
ATG4A-205ENST00000394892 CEP170Q5SW79 1584 aa15.53■□□□□ 0.08
ATG4A-205ENST00000394892 ERCC6L2Q5T890 1561 aa15.53■□□□□ 0.08
ATG4A-205ENST00000394892 IGF1RP08069 1367 aa15.51■□□□□ 0.07
ATG4A-205ENST00000394892 KIF27Q86VH2 1401 aa15.43■□□□□ 0.06
ATG4A-205ENST00000394892 SHROOM2Q13796 1616 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms