RNA–Protein interactions for RNA: ENST00000394342.2

APLF-202, Transcript of aprataxin and PNKP like factor, humanhuman

TSL 1 (best) BASIC

Gene APLF, Length 1,182 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APLF-202ENST00000394342 NISCHQ9Y2I1 1504 aa20.93■□□□□ 0.94
APLF-202ENST00000394342 AEBP2Q6ZN18 517 aaPredicted RBP19.21■□□□□ 0.67
APLF-202ENST00000394342 CCDC180Q9P1Z9 1646 aa18.74■□□□□ 0.59
APLF-202ENST00000394342 CHIC1Q5VXU3 224 aa18.4■□□□□ 0.54
APLF-202ENST00000394342 ABCC9O60706 1549 aa18.19■□□□□ 0.5
APLF-202ENST00000394342 RB1CC1Q8TDY2 1594 aa17.58■□□□□ 0.41
APLF-202ENST00000394342 NACADO15069 1562 aa17.56■□□□□ 0.4
APLF-202ENST00000394342 MYO15BQ96JP2 1530 aa17.44■□□□□ 0.38
APLF-202ENST00000394342 ZCCHC6Q5VYS8 1495 aaKnown RBP17.44■□□□□ 0.38
APLF-202ENST00000394342 DCAF8L2P0C7V8 631 aa17.37■□□□□ 0.37
APLF-202ENST00000394342 DCAF1Q9Y4B6 1507 aa17.36■□□□□ 0.37
APLF-202ENST00000394342 UNC13AQ9UPW8 1703 aa17.33■□□□□ 0.36
APLF-202ENST00000394342 BICRAQ9NZM4 1560 aa17.04■□□□□ 0.32
APLF-202ENST00000394342 SCRIBQ14160 1630 aa17■□□□□ 0.31
APLF-202ENST00000394342 PABPN1Q86U42 306 aaKnown RBP eCLIP16.94■□□□□ 0.3
APLF-202ENST00000394342 SHROOM4Q9ULL8 1493 aa16.88■□□□□ 0.29
APLF-202ENST00000394342 DNAJC5BQ9UF47 199 aa16.67■□□□□ 0.26
APLF-202ENST00000394342 EIF4G1Q04637 1599 aaKnown RBP16.59■□□□□ 0.25
APLF-202ENST00000394342 CC2D2AQ9P2K1 1620 aa16.54■□□□□ 0.24
APLF-202ENST00000394342 SENP3Q9H4L4 574 aaPredicted RBP16.44■□□□□ 0.22
APLF-202ENST00000394342 CECR2Q9BXF3 1484 aa16.37■□□□□ 0.21
APLF-202ENST00000394342 SMARCA4P51532 1647 aa16.29■□□□□ 0.2
APLF-202ENST00000394342 BAZ1AQ9NRL2 1556 aaPredicted RBP16.24■□□□□ 0.19
APLF-202ENST00000394342 PHF23Q9BUL5 403 aaPredicted RBP16.22■□□□□ 0.19
APLF-202ENST00000394342 SMARCA2P51531 1590 aa16.17■□□□□ 0.18
APLF-202ENST00000394342 PEG3Q9GZU2 1588 aa16.14■□□□□ 0.17
APLF-202ENST00000394342 NCAPD3P42695 1498 aa16.14■□□□□ 0.17
APLF-202ENST00000394342 ATAD2BQ9ULI0 1458 aa16.14■□□□□ 0.17
APLF-202ENST00000394342 HMGXB3Q12766 1538 aa16.12■□□□□ 0.17
APLF-202ENST00000394342 MROH2BQ7Z745 1585 aa16.1■□□□□ 0.17
APLF-202ENST00000394342 BAZ1BQ9UIG0 1483 aaKnown RBP16.02■□□□□ 0.15
APLF-202ENST00000394342 WIZO95785 1651 aa15.99■□□□□ 0.15
APLF-202ENST00000394342 RSF1Q96T23 1441 aaPredicted RBP15.88■□□□□ 0.13
APLF-202ENST00000394342 TOP2AP11388 1531 aaKnown RBP15.8■□□□□ 0.12
APLF-202ENST00000394342 LAMC3Q9Y6N6 1575 aa15.79■□□□□ 0.12
APLF-202ENST00000394342 NESP48681 1621 aa15.75■□□□□ 0.11
APLF-202ENST00000394342 ERCC6Q03468 1493 aa15.71■□□□□ 0.1
APLF-202ENST00000394342 KIF21AQ7Z4S6 1674 aa15.7■□□□□ 0.1
APLF-202ENST00000394342 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
APLF-202ENST00000394342 CADPSQ9ULU8 1353 aa15.64■□□□□ 0.09
APLF-202ENST00000394342 PDS5BQ9NTI5 1447 aa15.61■□□□□ 0.09
APLF-202ENST00000394342 THOC2Q8NI27 1593 aaKnown RBP15.61■□□□□ 0.09
APLF-202ENST00000394342 CUX2O14529 1486 aa15.59■□□□□ 0.09
APLF-202ENST00000394342 CCDC88BA6NC98 1476 aa15.57■□□□□ 0.08
APLF-202ENST00000394342 CFTRP13569 1480 aa15.57■□□□□ 0.08
APLF-202ENST00000394342 CEP164Q9UPV0 1460 aa15.49■□□□□ 0.07
APLF-202ENST00000394342 FANCD2Q9BXW9 1451 aa15.48■□□□□ 0.07
APLF-202ENST00000394342 MRC2Q9UBG0 1479 aa15.47■□□□□ 0.07
APLF-202ENST00000394342 WDR62O43379 1518 aa15.45■□□□□ 0.06
APLF-202ENST00000394342 SUPT5HO00267 1087 aaKnown RBP15.39■□□□□ 0.05
APLF-202ENST00000394342 URB2Q14146 1524 aaKnown RBP15.34■□□□□ 0.05
APLF-202ENST00000394342 ABCC8Q09428 1581 aa15.28■□□□□ 0.04
APLF-202ENST00000394342 FOXD1Q16676 465 aa15.27■□□□□ 0.04
APLF-202ENST00000394342 DNMBPQ6XZF7 1577 aa15.27■□□□□ 0.03
APLF-202ENST00000394342 TOPBP1Q92547 1522 aa15.25■□□□□ 0.03
APLF-202ENST00000394342 IFT140Q96RY7 1462 aa15.16■□□□□ 0.02
APLF-202ENST00000394342 TARBP1Q13395 1621 aaKnown RBP15.14■□□□□ 0.01
APLF-202ENST00000394342 CUX1P39880 1505 aa15.12■□□□□ 0.01
APLF-202ENST00000394342 POLA1P09884 1462 aaPredicted RBP15.11■□□□□ 0.01
APLF-202ENST00000394342 EIF4G3O43432 1585 aaKnown RBP15.08■□□□□ 0
APLF-202ENST00000394342 DNAJC5Q9H3Z4 198 aa15.07■□□□□ 0
APLF-202ENST00000394342 FGD5Q6ZNL6 1462 aa15.07■□□□□ 0
APLF-202ENST00000394342 ZNF608Q9ULD9 1512 aaPredicted RBP15.07■□□□□ 0
APLF-202ENST00000394342 WDR97A6NE52 1622 aa15.06■□□□□ 0
APLF-202ENST00000394342 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
APLF-202ENST00000394342 TOP2BQ02880 1626 aa15.03■□□□□ -0
APLF-202ENST00000394342 RAD54L2Q9Y4B4 1467 aa15.01□□□□□ -0.01
APLF-202ENST00000394342 SOGA1O94964 1423 aa15.01□□□□□ -0.01
APLF-202ENST00000394342 SYNJ1O43426 1573 aa15□□□□□ -0.01
APLF-202ENST00000394342 WRNQ14191 1432 aaPredicted RBP eCLIP14.99□□□□□ -0.01
APLF-202ENST00000394342 PBRM1Q86U86 1689 aa14.98□□□□□ -0.01
APLF-202ENST00000394342 CHD1O14646 1710 aa14.97□□□□□ -0.01
APLF-202ENST00000394342 AQRO60306 1485 aaKnown RBP eCLIP14.96□□□□□ -0.01
APLF-202ENST00000394342 ABCA10Q8WWZ4 1543 aa14.94□□□□□ -0.02
APLF-202ENST00000394342 ABCA5Q8WWZ7 1642 aa14.93□□□□□ -0.02
APLF-202ENST00000394342 TDRD9Q8NDG6 1382 aaKnown RBP14.9□□□□□ -0.02
APLF-202ENST00000394342 GRIN2BQ13224 1484 aa14.88□□□□□ -0.03
APLF-202ENST00000394342 GAPVD1Q14C86 1478 aa14.87□□□□□ -0.03
APLF-202ENST00000394342 MAGI1Q96QZ7 1491 aaPredicted RBP14.87□□□□□ -0.03
APLF-202ENST00000394342 PLPPR3Q6T4P5 718 aa14.86□□□□□ -0.03
APLF-202ENST00000394342 OSCARQ8IYS5 282 aa14.86□□□□□ -0.03
APLF-202ENST00000394342 SNAPC4Q5SXM2 1469 aa14.86□□□□□ -0.03
APLF-202ENST00000394342 SYNJ2O15056 1496 aa14.79□□□□□ -0.04
APLF-202ENST00000394342 ADAMTS12P58397 1594 aa14.78□□□□□ -0.04
APLF-202ENST00000394342 ERICH3Q5RHP9 1530 aa14.78□□□□□ -0.04
APLF-202ENST00000394342 FBLN2P98095 1184 aa14.75□□□□□ -0.05
APLF-202ENST00000394342 RIMBP3CA6NJZ7 1639 aa14.74□□□□□ -0.05
APLF-202ENST00000394342 RIMBP3BA6NNM3 1639 aa14.74□□□□□ -0.05
APLF-202ENST00000394342 RIMBP3Q9UFD9 1639 aa14.74□□□□□ -0.05
APLF-202ENST00000394342 CHMP7Q8WUX9 453 aaPredicted RBP14.73□□□□□ -0.05
APLF-202ENST00000394342 CLASP1Q7Z460 1538 aa14.72□□□□□ -0.05
APLF-202ENST00000394342 CUL7Q14999 1698 aa14.7□□□□□ -0.06
APLF-202ENST00000394342 FHAD1B1AJZ9 1412 aa14.69□□□□□ -0.06
APLF-202ENST00000394342 GRIN2AQ12879 1464 aa14.69□□□□□ -0.06
APLF-202ENST00000394342 KIF27Q86VH2 1401 aa14.68□□□□□ -0.06
APLF-202ENST00000394342 ARHGEF11O15085 1522 aa14.67□□□□□ -0.06
APLF-202ENST00000394342 CEP170Q5SW79 1584 aa14.64□□□□□ -0.07
APLF-202ENST00000394342 NUP160Q12769 1436 aa14.62□□□□□ -0.07
APLF-202ENST00000394342 IGF1RP08069 1367 aa14.6□□□□□ -0.07
APLF-202ENST00000394342 SHROOM2Q13796 1616 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms