RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 NISCHQ9Y2I1 1504 aa18.72■□□□□ 0.59
HMGB3P1-201ENST00000393368 AEBP2Q6ZN18 517 aaPredicted RBP16.88■□□□□ 0.29
HMGB3P1-201ENST00000393368 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
HMGB3P1-201ENST00000393368 ABCC9O60706 1549 aa16.4■□□□□ 0.22
HMGB3P1-201ENST00000393368 CHIC1Q5VXU3 224 aa16.21■□□□□ 0.19
HMGB3P1-201ENST00000393368 DCAF8L2P0C7V8 631 aa15.73■□□□□ 0.11
HMGB3P1-201ENST00000393368 RB1CC1Q8TDY2 1594 aa15.66■□□□□ 0.1
HMGB3P1-201ENST00000393368 NACADO15069 1562 aa15.62■□□□□ 0.09
HMGB3P1-201ENST00000393368 ZCCHC6Q5VYS8 1495 aaKnown RBP15.59■□□□□ 0.09
HMGB3P1-201ENST00000393368 MYO15BQ96JP2 1530 aa15.48■□□□□ 0.07
HMGB3P1-201ENST00000393368 DCAF1Q9Y4B6 1507 aa15.43■□□□□ 0.06
HMGB3P1-201ENST00000393368 PABPN1Q86U42 306 aaKnown RBP eCLIP15.34■□□□□ 0.05
HMGB3P1-201ENST00000393368 UNC13AQ9UPW8 1703 aa15.32■□□□□ 0.04
HMGB3P1-201ENST00000393368 SCRIBQ14160 1630 aa15.25■□□□□ 0.03
HMGB3P1-201ENST00000393368 BICRAQ9NZM4 1560 aa15.24■□□□□ 0.03
HMGB3P1-201ENST00000393368 DNAJC5BQ9UF47 199 aa15.1■□□□□ 0.01
HMGB3P1-201ENST00000393368 SHROOM4Q9ULL8 1493 aa14.97□□□□□ -0.01
HMGB3P1-201ENST00000393368 EIF4G1Q04637 1599 aaKnown RBP14.84□□□□□ -0.03
HMGB3P1-201ENST00000393368 CC2D2AQ9P2K1 1620 aa14.79□□□□□ -0.04
HMGB3P1-201ENST00000393368 CECR2Q9BXF3 1484 aa14.7□□□□□ -0.06
HMGB3P1-201ENST00000393368 SMARCA4P51532 1647 aa14.54□□□□□ -0.08
HMGB3P1-201ENST00000393368 BAZ1AQ9NRL2 1556 aaPredicted RBP14.49□□□□□ -0.09
HMGB3P1-201ENST00000393368 ATAD2BQ9ULI0 1458 aa14.47□□□□□ -0.09
HMGB3P1-201ENST00000393368 MROH2BQ7Z745 1585 aa14.47□□□□□ -0.09
HMGB3P1-201ENST00000393368 NCAPD3P42695 1498 aa14.44□□□□□ -0.1
HMGB3P1-201ENST00000393368 SMARCA2P51531 1590 aa14.41□□□□□ -0.1
HMGB3P1-201ENST00000393368 HMGXB3Q12766 1538 aa14.36□□□□□ -0.11
HMGB3P1-201ENST00000393368 BAZ1BQ9UIG0 1483 aaKnown RBP14.36□□□□□ -0.11
HMGB3P1-201ENST00000393368 PEG3Q9GZU2 1588 aa14.35□□□□□ -0.11
HMGB3P1-201ENST00000393368 SENP3Q9H4L4 574 aaPredicted RBP14.34□□□□□ -0.11
HMGB3P1-201ENST00000393368 WIZO95785 1651 aa14.3□□□□□ -0.12
HMGB3P1-201ENST00000393368 RSF1Q96T23 1441 aaPredicted RBP14.27□□□□□ -0.12
HMGB3P1-201ENST00000393368 PHF23Q9BUL5 403 aaPredicted RBP14.23□□□□□ -0.13
HMGB3P1-201ENST00000393368 NESP48681 1621 aa14.19□□□□□ -0.14
HMGB3P1-201ENST00000393368 TOP2AP11388 1531 aaKnown RBP14.12□□□□□ -0.15
HMGB3P1-201ENST00000393368 ERCC6Q03468 1493 aa14.11□□□□□ -0.15
HMGB3P1-201ENST00000393368 LAMC3Q9Y6N6 1575 aa14.05□□□□□ -0.16
HMGB3P1-201ENST00000393368 CADPSQ9ULU8 1353 aa14.03□□□□□ -0.16
HMGB3P1-201ENST00000393368 CCDC88BA6NC98 1476 aa13.98□□□□□ -0.17
HMGB3P1-201ENST00000393368 KIF21AQ7Z4S6 1674 aa13.98□□□□□ -0.17
HMGB3P1-201ENST00000393368 PDS5BQ9NTI5 1447 aa13.97□□□□□ -0.17
HMGB3P1-201ENST00000393368 THOC2Q8NI27 1593 aaKnown RBP13.94□□□□□ -0.18
HMGB3P1-201ENST00000393368 CFTRP13569 1480 aa13.93□□□□□ -0.18
HMGB3P1-201ENST00000393368 SUPT5HO00267 1087 aaKnown RBP13.93□□□□□ -0.18
HMGB3P1-201ENST00000393368 CUX2O14529 1486 aa13.92□□□□□ -0.18
HMGB3P1-201ENST00000393368 FANCD2Q9BXW9 1451 aa13.89□□□□□ -0.19
HMGB3P1-201ENST00000393368 CEP164Q9UPV0 1460 aa13.87□□□□□ -0.19
HMGB3P1-201ENST00000393368 MRC2Q9UBG0 1479 aa13.86□□□□□ -0.19
HMGB3P1-201ENST00000393368 WDR62O43379 1518 aa13.81□□□□□ -0.2
HMGB3P1-201ENST00000393368 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
HMGB3P1-201ENST00000393368 URB2Q14146 1524 aaKnown RBP13.77□□□□□ -0.21
HMGB3P1-201ENST00000393368 TOPBP1Q92547 1522 aa13.66□□□□□ -0.22
HMGB3P1-201ENST00000393368 DNMBPQ6XZF7 1577 aa13.62□□□□□ -0.23
HMGB3P1-201ENST00000393368 ABCC8Q09428 1581 aa13.58□□□□□ -0.23
HMGB3P1-201ENST00000393368 CUX1P39880 1505 aa13.57□□□□□ -0.24
HMGB3P1-201ENST00000393368 ZNF608Q9ULD9 1512 aaPredicted RBP13.57□□□□□ -0.24
HMGB3P1-201ENST00000393368 IFT140Q96RY7 1462 aa13.56□□□□□ -0.24
HMGB3P1-201ENST00000393368 POLA1P09884 1462 aaPredicted RBP13.55□□□□□ -0.24
HMGB3P1-201ENST00000393368 DNAJC5Q9H3Z4 198 aa13.55□□□□□ -0.24
HMGB3P1-201ENST00000393368 FGD5Q6ZNL6 1462 aa13.53□□□□□ -0.24
HMGB3P1-201ENST00000393368 RAD54L2Q9Y4B4 1467 aa13.53□□□□□ -0.24
HMGB3P1-201ENST00000393368 TARBP1Q13395 1621 aaKnown RBP13.51□□□□□ -0.25
HMGB3P1-201ENST00000393368 EIF4G3O43432 1585 aaKnown RBP13.49□□□□□ -0.25
HMGB3P1-201ENST00000393368 AQRO60306 1485 aaKnown RBP eCLIP13.48□□□□□ -0.25
HMGB3P1-201ENST00000393368 SOGA1O94964 1423 aa13.48□□□□□ -0.25
HMGB3P1-201ENST00000393368 WRNQ14191 1432 aaPredicted RBP eCLIP13.45□□□□□ -0.26
HMGB3P1-201ENST00000393368 SYNJ1O43426 1573 aa13.45□□□□□ -0.26
HMGB3P1-201ENST00000393368 TDRD9Q8NDG6 1382 aaKnown RBP13.45□□□□□ -0.26
HMGB3P1-201ENST00000393368 TOP2BQ02880 1626 aa13.4□□□□□ -0.26
HMGB3P1-201ENST00000393368 BIVM-ERCC5R4GMW8 1640 aa13.39□□□□□ -0.27
HMGB3P1-201ENST00000393368 WDR97A6NE52 1622 aa13.39□□□□□ -0.27
HMGB3P1-201ENST00000393368 FOXD1Q16676 465 aa13.36□□□□□ -0.27
HMGB3P1-201ENST00000393368 SNAPC4Q5SXM2 1469 aa13.36□□□□□ -0.27
HMGB3P1-201ENST00000393368 ABCA10Q8WWZ4 1543 aa13.35□□□□□ -0.27
HMGB3P1-201ENST00000393368 OSCARQ8IYS5 282 aa13.34□□□□□ -0.27
HMGB3P1-201ENST00000393368 FBLN2P98095 1184 aa13.33□□□□□ -0.28
HMGB3P1-201ENST00000393368 GAPVD1Q14C86 1478 aa13.32□□□□□ -0.28
HMGB3P1-201ENST00000393368 ABCA5Q8WWZ7 1642 aa13.31□□□□□ -0.28
HMGB3P1-201ENST00000393368 GRIN2BQ13224 1484 aa13.31□□□□□ -0.28
HMGB3P1-201ENST00000393368 CHD1O14646 1710 aa13.3□□□□□ -0.28
HMGB3P1-201ENST00000393368 PBRM1Q86U86 1689 aa13.29□□□□□ -0.28
HMGB3P1-201ENST00000393368 MAGI1Q96QZ7 1491 aaPredicted RBP13.27□□□□□ -0.29
HMGB3P1-201ENST00000393368 SYNJ2O15056 1496 aa13.24□□□□□ -0.29
HMGB3P1-201ENST00000393368 CHMP7Q8WUX9 453 aaPredicted RBP13.24□□□□□ -0.29
HMGB3P1-201ENST00000393368 ADAMTS12P58397 1594 aa13.21□□□□□ -0.29
HMGB3P1-201ENST00000393368 TRIM41Q8WV44 630 aa13.18□□□□□ -0.3
HMGB3P1-201ENST00000393368 ERICH3Q5RHP9 1530 aa13.18□□□□□ -0.3
HMGB3P1-201ENST00000393368 RIMBP3CA6NJZ7 1639 aa13.17□□□□□ -0.3
HMGB3P1-201ENST00000393368 RIMBP3BA6NNM3 1639 aa13.17□□□□□ -0.3
HMGB3P1-201ENST00000393368 RIMBP3Q9UFD9 1639 aa13.17□□□□□ -0.3
HMGB3P1-201ENST00000393368 ARHGEF11O15085 1522 aa13.17□□□□□ -0.3
HMGB3P1-201ENST00000393368 CLASP1Q7Z460 1538 aa13.17□□□□□ -0.3
HMGB3P1-201ENST00000393368 GRIN2AQ12879 1464 aa13.16□□□□□ -0.3
HMGB3P1-201ENST00000393368 FHAD1B1AJZ9 1412 aa13.15□□□□□ -0.3
HMGB3P1-201ENST00000393368 KIF27Q86VH2 1401 aa13.15□□□□□ -0.3
HMGB3P1-201ENST00000393368 CEP170Q5SW79 1584 aa13.12□□□□□ -0.31
HMGB3P1-201ENST00000393368 IGF1RP08069 1367 aa13.11□□□□□ -0.31
HMGB3P1-201ENST00000393368 RUSC2Q8N2Y8 1516 aa13.1□□□□□ -0.31
HMGB3P1-201ENST00000393368 NUP160Q12769 1436 aa13.1□□□□□ -0.31
HMGB3P1-201ENST00000393368 ARAP1Q96P48 1450 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms