RNA–Protein interactions for RNA: ENST00000392496.3

SPHK1-202, Transcript of sphingosine kinase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SPHK1, Length 1,779 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPHK1-202ENST00000392496 NISCHQ9Y2I1 1504 aa47.87■■■■■ 5.25
SPHK1-202ENST00000392496 CCDC180Q9P1Z9 1646 aa41.66■■■■■ 4.26
SPHK1-202ENST00000392496 ZCCHC6Q5VYS8 1495 aaKnown RBP40.27■■■■■ 4.04
SPHK1-202ENST00000392496 ABCC9O60706 1549 aa39.74■■■■□ 3.95
SPHK1-202ENST00000392496 DCAF1Q9Y4B6 1507 aa39.62■■■■□ 3.93
SPHK1-202ENST00000392496 DCAF8L2P0C7V8 631 aa39.37■■■■□ 3.89
SPHK1-202ENST00000392496 SHROOM4Q9ULL8 1493 aa39.14■■■■□ 3.86
SPHK1-202ENST00000392496 MYO15BQ96JP2 1530 aa39.07■■■■□ 3.84
SPHK1-202ENST00000392496 NACADO15069 1562 aa38.73■■■■□ 3.79
SPHK1-202ENST00000392496 RB1CC1Q8TDY2 1594 aa38.56■■■■□ 3.76
SPHK1-202ENST00000392496 SCRIBQ14160 1630 aa38.29■■■■□ 3.72
SPHK1-202ENST00000392496 SUPT5HO00267 1087 aaKnown RBP37.8■■■■□ 3.64
SPHK1-202ENST00000392496 UNC13AQ9UPW8 1703 aa37.57■■■■□ 3.61
SPHK1-202ENST00000392496 PABPN1Q86U42 306 aaKnown RBP eCLIP37.26■■■■□ 3.563e-7■■■□□ 17.7
SPHK1-202ENST00000392496 RSF1Q96T23 1441 aaPredicted RBP37.22■■■■□ 3.55
SPHK1-202ENST00000392496 BICRAQ9NZM4 1560 aa37.19■■■■□ 3.54
SPHK1-202ENST00000392496 CECR2Q9BXF3 1484 aa37.15■■■■□ 3.54
SPHK1-202ENST00000392496 MROH2BQ7Z745 1585 aa36.98■■■■□ 3.51
SPHK1-202ENST00000392496 BAZ1AQ9NRL2 1556 aaPredicted RBP36.95■■■■□ 3.51
SPHK1-202ENST00000392496 SMARCA4P51532 1647 aa36.75■■■■□ 3.47
SPHK1-202ENST00000392496 WIZO95785 1651 aa36.69■■■■□ 3.46
SPHK1-202ENST00000392496 CHIC1Q5VXU3 224 aa36.35■■■■□ 3.41
SPHK1-202ENST00000392496 TOP2AP11388 1531 aaKnown RBP36.34■■■■□ 3.41
SPHK1-202ENST00000392496 PEG3Q9GZU2 1588 aa36.31■■■■□ 3.4
SPHK1-202ENST00000392496 EIF4G1Q04637 1599 aaKnown RBP36.26■■■■□ 3.4
SPHK1-202ENST00000392496 SMARCA2P51531 1590 aa36.08■■■■□ 3.37
SPHK1-202ENST00000392496 ATAD2BQ9ULI0 1458 aa36.08■■■■□ 3.37
SPHK1-202ENST00000392496 CC2D2AQ9P2K1 1620 aa35.95■■■■□ 3.35
SPHK1-202ENST00000392496 CCDC88BA6NC98 1476 aa35.95■■■■□ 3.35
SPHK1-202ENST00000392496 BAZ1BQ9UIG0 1483 aaKnown RBP35.88■■■■□ 3.33
SPHK1-202ENST00000392496 DNAJC5BQ9UF47 199 aa35.79■■■■□ 3.32
SPHK1-202ENST00000392496 NCAPD3P42695 1498 aa35.74■■■■□ 3.31
SPHK1-202ENST00000392496 HMGXB3Q12766 1538 aa35.72■■■■□ 3.31
SPHK1-202ENST00000392496 TRIM41Q8WV44 630 aa35.55■■■■□ 3.28
SPHK1-202ENST00000392496 ABCC8Q09428 1581 aa35.26■■■■□ 3.23
SPHK1-202ENST00000392496 WRNQ14191 1432 aaPredicted RBP eCLIP35.03■■■■□ 3.2
SPHK1-202ENST00000392496 CFTRP13569 1480 aa35.01■■■■□ 3.19
SPHK1-202ENST00000392496 LOC105371045A0A1W2PR82 267 aa34.93■■■■□ 3.18
SPHK1-202ENST00000392496 PRDM2Q13029 1718 aa34.88■■■■□ 3.17
SPHK1-202ENST00000392496 FAM9AQ8IZU1 332 aaPredicted RBP34.87■■■■□ 3.17
SPHK1-202ENST00000392496 SYNJ1O43426 1573 aa34.87■■■■□ 3.17
SPHK1-202ENST00000392496 CADPSQ9ULU8 1353 aa34.83■■■■□ 3.17
SPHK1-202ENST00000392496 TOP2BQ02880 1626 aa34.73■■■■□ 3.15
SPHK1-202ENST00000392496 BIVM-ERCC5R4GMW8 1640 aa34.71■■■■□ 3.15
SPHK1-202ENST00000392496 EEA1Q15075 1411 aa34.69■■■■□ 3.14
SPHK1-202ENST00000392496 SOGA1O94964 1423 aa34.65■■■■□ 3.14
SPHK1-202ENST00000392496 LAMC3Q9Y6N6 1575 aa34.63■■■■□ 3.13
SPHK1-202ENST00000392496 CUX1P39880 1505 aa34.56■■■■□ 3.12
SPHK1-202ENST00000392496 RUSC2Q8N2Y8 1516 aa34.5■■■■□ 3.11
SPHK1-202ENST00000392496 NESP48681 1621 aa34.5■■■■□ 3.11
SPHK1-202ENST00000392496 CSRNP3Q8WYN3 585 aa34.44■■■■□ 3.1
SPHK1-202ENST00000392496 PDS5BQ9NTI5 1447 aa34.44■■■■□ 3.1
SPHK1-202ENST00000392496 FANCD2Q9BXW9 1451 aa34.44■■■■□ 3.1
SPHK1-202ENST00000392496 ERCC6Q03468 1493 aa34.32■■■■□ 3.09
SPHK1-202ENST00000392496 EHMT2Q96KQ7 1210 aa34.32■■■■□ 3.08
SPHK1-202ENST00000392496 KIF21BO75037 1637 aa34.22■■■■□ 3.07
SPHK1-202ENST00000392496 GOLGA3Q08378 1498 aa34.21■■■■□ 3.07
SPHK1-202ENST00000392496 CEP164Q9UPV0 1460 aa34.2■■■■□ 3.07
SPHK1-202ENST00000392496 DNMBPQ6XZF7 1577 aa34.2■■■■□ 3.06
SPHK1-202ENST00000392496 TNIKQ9UKE5 1360 aa34.15■■■■□ 3.06
SPHK1-202ENST00000392496 FGD5Q6ZNL6 1462 aa34.14■■■■□ 3.06
SPHK1-202ENST00000392496 KIF21AQ7Z4S6 1674 aa34.13■■■■□ 3.05
SPHK1-202ENST00000392496 KIF27Q86VH2 1401 aa34.13■■■■□ 3.05
SPHK1-202ENST00000392496 TOPBP1Q92547 1522 aa34.1■■■■□ 3.05
SPHK1-202ENST00000392496 UBTFP17480 764 aaKnown RBP34■■■■□ 3.03
SPHK1-202ENST00000392496 URB2Q14146 1524 aaKnown RBP34■■■■□ 3.03
SPHK1-202ENST00000392496 CUX2O14529 1486 aa33.97■■■■□ 3.03
SPHK1-202ENST00000392496 PRXQ9BXM0 1461 aa33.96■■■■□ 3.03
SPHK1-202ENST00000392496 MRC2Q9UBG0 1479 aa33.96■■■■□ 3.03
SPHK1-202ENST00000392496 CEP162Q5TB80 1403 aa33.95■■■■□ 3.03
SPHK1-202ENST00000392496 POLA1P09884 1462 aaPredicted RBP33.95■■■■□ 3.03
SPHK1-202ENST00000392496 ERICH3Q5RHP9 1530 aa33.95■■■■□ 3.03
SPHK1-202ENST00000392496 RAPGEF2Q9Y4G8 1499 aa33.94■■■■□ 3.02
SPHK1-202ENST00000392496 ABCA10Q8WWZ4 1543 aa33.87■■■■□ 3.01
SPHK1-202ENST00000392496 THOC2Q8NI27 1593 aaKnown RBP33.84■■■■□ 3.01
SPHK1-202ENST00000392496 RAD54L2Q9Y4B4 1467 aa33.82■■■■□ 3
SPHK1-202ENST00000392496 IGF1RP08069 1367 aa33.79■■■■□ 3
SPHK1-202ENST00000392496 WDR62O43379 1518 aa33.78■■■■□ 3
SPHK1-202ENST00000392496 WDR97A6NE52 1622 aa33.75■■■□□ 2.99
SPHK1-202ENST00000392496 CLIP1P30622 1438 aa33.65■■■□□ 2.98
SPHK1-202ENST00000392496 CARMIL1Q5VZK9 1371 aa33.63■■■□□ 2.97
SPHK1-202ENST00000392496 TRIM26Q12899 539 aaPredicted RBP33.59■■■□□ 2.97
SPHK1-202ENST00000392496 PCGF6Q9BYE7 350 aa33.59■■■□□ 2.97
SPHK1-202ENST00000392496 TARBP1Q13395 1621 aaKnown RBP33.58■■■□□ 2.97
SPHK1-202ENST00000392496 ABCA5Q8WWZ7 1642 aa33.57■■■□□ 2.97
SPHK1-202ENST00000392496 CUL7Q14999 1698 aa33.54■■■□□ 2.96
SPHK1-202ENST00000392496 GAPVD1Q14C86 1478 aa33.48■■■□□ 2.95
SPHK1-202ENST00000392496 TDRD9Q8NDG6 1382 aaKnown RBP33.46■■■□□ 2.95
SPHK1-202ENST00000392496 IFT140Q96RY7 1462 aa33.43■■■□□ 2.94
SPHK1-202ENST00000392496 VPS8Q8N3P4 1428 aa33.4■■■□□ 2.94
SPHK1-202ENST00000392496 RANGAP1P46060 587 aaPredicted RBP33.31■■■□□ 2.92
SPHK1-202ENST00000392496 ARAP1Q96P48 1450 aa33.29■■■□□ 2.92
SPHK1-202ENST00000392496 PBRM1Q86U86 1689 aa33.29■■■□□ 2.92
SPHK1-202ENST00000392496 ARHGAP35Q9NRY4 1499 aa33.24■■■□□ 2.91
SPHK1-202ENST00000392496 PPARGC1BQ86YN6 1023 aaKnown RBP33.24■■■□□ 2.91
SPHK1-202ENST00000392496 AQRO60306 1485 aaKnown RBP eCLIP33.21■■■□□ 2.913e-17■■■■■ 62.1
SPHK1-202ENST00000392496 CTTNBP2Q8WZ74 1663 aa33.2■■■□□ 2.91
SPHK1-202ENST00000392496 GRIN2BQ13224 1484 aa33.19■■■□□ 2.9
SPHK1-202ENST00000392496 ZNF608Q9ULD9 1512 aaPredicted RBP33.15■■■□□ 2.9
SPHK1-202ENST00000392496 FHAD1B1AJZ9 1412 aa33.13■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms