RNA–Protein interactions for RNA: ENST00000390448.3

TRAV20-201, Transcript of T cell receptor alpha variable 20, humanhuman

APPRIS P1 BASIC

Gene TRAV20, Length 406 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20-201ENST00000390448 NISCHQ9Y2I1 1504 aa22.34■■□□□ 1.17
TRAV20-201ENST00000390448 ABCC9O60706 1549 aa20.2■□□□□ 0.82
TRAV20-201ENST00000390448 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
TRAV20-201ENST00000390448 RB1CC1Q8TDY2 1594 aa19.16■□□□□ 0.66
TRAV20-201ENST00000390448 DCAF8L2P0C7V8 631 aa19.13■□□□□ 0.65
TRAV20-201ENST00000390448 NACADO15069 1562 aa18.99■□□□□ 0.63
TRAV20-201ENST00000390448 DNAJC5BQ9UF47 199 aa18.97■□□□□ 0.63
TRAV20-201ENST00000390448 PABPN1Q86U42 306 aaKnown RBP eCLIP18.86■□□□□ 0.61
TRAV20-201ENST00000390448 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
TRAV20-201ENST00000390448 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
TRAV20-201ENST00000390448 BICRAQ9NZM4 1560 aa18.51■□□□□ 0.55
TRAV20-201ENST00000390448 ZCCHC6Q5VYS8 1495 aaKnown RBP18.47■□□□□ 0.55
TRAV20-201ENST00000390448 DCAF1Q9Y4B6 1507 aa18.4■□□□□ 0.54
TRAV20-201ENST00000390448 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
TRAV20-201ENST00000390448 SHROOM4Q9ULL8 1493 aa18.29■□□□□ 0.52
TRAV20-201ENST00000390448 CECR2Q9BXF3 1484 aa18.2■□□□□ 0.5
TRAV20-201ENST00000390448 CC2D2AQ9P2K1 1620 aa18.18■□□□□ 0.5
TRAV20-201ENST00000390448 EIF4G1Q04637 1599 aaKnown RBP18.12■□□□□ 0.49
TRAV20-201ENST00000390448 NCAPD3P42695 1498 aa17.54■□□□□ 0.4
TRAV20-201ENST00000390448 DNAJC5Q9H3Z4 198 aa17.51■□□□□ 0.39
TRAV20-201ENST00000390448 ERCC6Q03468 1493 aa17.5■□□□□ 0.39
TRAV20-201ENST00000390448 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
TRAV20-201ENST00000390448 SMARCA2P51531 1590 aa17.44■□□□□ 0.38
TRAV20-201ENST00000390448 SMARCA4P51532 1647 aa17.42■□□□□ 0.38
TRAV20-201ENST00000390448 CUX2O14529 1486 aa17.39■□□□□ 0.37
TRAV20-201ENST00000390448 HMGXB3Q12766 1538 aa17.37■□□□□ 0.37
TRAV20-201ENST00000390448 BAZ1AQ9NRL2 1556 aaPredicted RBP17.36■□□□□ 0.37
TRAV20-201ENST00000390448 BAZ1BQ9UIG0 1483 aaKnown RBP17.36■□□□□ 0.37
TRAV20-201ENST00000390448 NESP48681 1621 aa17.29■□□□□ 0.36
TRAV20-201ENST00000390448 MROH2BQ7Z745 1585 aa17.21■□□□□ 0.35
TRAV20-201ENST00000390448 PEG3Q9GZU2 1588 aa17.21■□□□□ 0.35
TRAV20-201ENST00000390448 LAMC3Q9Y6N6 1575 aa17.15■□□□□ 0.34
TRAV20-201ENST00000390448 PDS5BQ9NTI5 1447 aa17.13■□□□□ 0.33
TRAV20-201ENST00000390448 CADPSQ9ULU8 1353 aa17.05■□□□□ 0.32
TRAV20-201ENST00000390448 THOC2Q8NI27 1593 aaKnown RBP17.05■□□□□ 0.32
TRAV20-201ENST00000390448 KIF21AQ7Z4S6 1674 aa17.01■□□□□ 0.31
TRAV20-201ENST00000390448 WIZO95785 1651 aa16.99■□□□□ 0.31
TRAV20-201ENST00000390448 MRC2Q9UBG0 1479 aa16.93■□□□□ 0.3
TRAV20-201ENST00000390448 CEP164Q9UPV0 1460 aa16.87■□□□□ 0.29
TRAV20-201ENST00000390448 RSF1Q96T23 1441 aaPredicted RBP16.86■□□□□ 0.29
TRAV20-201ENST00000390448 FANCD2Q9BXW9 1451 aa16.86■□□□□ 0.29
TRAV20-201ENST00000390448 WDR62O43379 1518 aa16.85■□□□□ 0.29
TRAV20-201ENST00000390448 TRIM41Q8WV44 630 aa16.82■□□□□ 0.28
TRAV20-201ENST00000390448 CFTRP13569 1480 aa16.8■□□□□ 0.28
TRAV20-201ENST00000390448 TOP2AP11388 1531 aaKnown RBP16.78■□□□□ 0.28
TRAV20-201ENST00000390448 OSCARQ8IYS5 282 aa16.71■□□□□ 0.27
TRAV20-201ENST00000390448 URB2Q14146 1524 aaKnown RBP16.67■□□□□ 0.26
TRAV20-201ENST00000390448 CCDC88BA6NC98 1476 aa16.63■□□□□ 0.25
TRAV20-201ENST00000390448 IFT140Q96RY7 1462 aa16.54■□□□□ 0.24
TRAV20-201ENST00000390448 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
TRAV20-201ENST00000390448 ABCC8Q09428 1581 aa16.5■□□□□ 0.23
TRAV20-201ENST00000390448 TOPBP1Q92547 1522 aa16.5■□□□□ 0.23
TRAV20-201ENST00000390448 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
TRAV20-201ENST00000390448 FBLN2P98095 1184 aa16.42■□□□□ 0.22
TRAV20-201ENST00000390448 DNMBPQ6XZF7 1577 aa16.42■□□□□ 0.22
TRAV20-201ENST00000390448 AQRO60306 1485 aaKnown RBP eCLIP16.38■□□□□ 0.21
TRAV20-201ENST00000390448 EIF4G3O43432 1585 aaKnown RBP16.37■□□□□ 0.21
TRAV20-201ENST00000390448 RIMBP3CA6NJZ7 1639 aa16.35■□□□□ 0.21
TRAV20-201ENST00000390448 RIMBP3BA6NNM3 1639 aa16.35■□□□□ 0.21
TRAV20-201ENST00000390448 RIMBP3Q9UFD9 1639 aa16.35■□□□□ 0.21
TRAV20-201ENST00000390448 CYB5RLQ6IPT4 315 aa16.34■□□□□ 0.21
TRAV20-201ENST00000390448 ARHGEF11O15085 1522 aa16.32■□□□□ 0.2
TRAV20-201ENST00000390448 SOGA1O94964 1423 aa16.32■□□□□ 0.2
TRAV20-201ENST00000390448 POLA1P09884 1462 aaPredicted RBP16.32■□□□□ 0.2
TRAV20-201ENST00000390448 TARBP1Q13395 1621 aaKnown RBP16.3■□□□□ 0.2
TRAV20-201ENST00000390448 TDRD9Q8NDG6 1382 aaKnown RBP16.3■□□□□ 0.2
TRAV20-201ENST00000390448 RAD54L2Q9Y4B4 1467 aa16.29■□□□□ 0.2
TRAV20-201ENST00000390448 CHMP7Q8WUX9 453 aaPredicted RBP16.26■□□□□ 0.19
TRAV20-201ENST00000390448 SUPT5HO00267 1087 aaKnown RBP16.24■□□□□ 0.19
TRAV20-201ENST00000390448 CHD1O14646 1710 aa16.24■□□□□ 0.19
TRAV20-201ENST00000390448 TRHP20396 242 aaPredicted RBP16.23■□□□□ 0.19
TRAV20-201ENST00000390448 FGD5Q6ZNL6 1462 aa16.22■□□□□ 0.19
TRAV20-201ENST00000390448 SNAPC4Q5SXM2 1469 aa16.18■□□□□ 0.18
TRAV20-201ENST00000390448 CUX1P39880 1505 aa16.17■□□□□ 0.18
TRAV20-201ENST00000390448 GRIN2BQ13224 1484 aa16.16■□□□□ 0.18
TRAV20-201ENST00000390448 WDR97A6NE52 1622 aa16.14■□□□□ 0.17
TRAV20-201ENST00000390448 ARAP1Q96P48 1450 aa16.14■□□□□ 0.17
TRAV20-201ENST00000390448 MAGI1Q96QZ7 1491 aaPredicted RBP16.14■□□□□ 0.17
TRAV20-201ENST00000390448 SYNJ1O43426 1573 aa16.1■□□□□ 0.17
TRAV20-201ENST00000390448 SYNJ2O15056 1496 aa16.09■□□□□ 0.17
TRAV20-201ENST00000390448 GAPVD1Q14C86 1478 aa16.09■□□□□ 0.17
TRAV20-201ENST00000390448 CLASP1Q7Z460 1538 aa16.04■□□□□ 0.16
TRAV20-201ENST00000390448 WRNQ14191 1432 aaPredicted RBP eCLIP16.02■□□□□ 0.16
TRAV20-201ENST00000390448 ABCA10Q8WWZ4 1543 aa16.02■□□□□ 0.15
TRAV20-201ENST00000390448 PBRM1Q86U86 1689 aa15.99■□□□□ 0.15
TRAV20-201ENST00000390448 ABCA5Q8WWZ7 1642 aa15.95■□□□□ 0.14
TRAV20-201ENST00000390448 GRIN2AQ12879 1464 aa15.92■□□□□ 0.14
TRAV20-201ENST00000390448 TOP2BQ02880 1626 aa15.89■□□□□ 0.13
TRAV20-201ENST00000390448 FHAD1B1AJZ9 1412 aa15.88■□□□□ 0.13
TRAV20-201ENST00000390448 BIVM-ERCC5R4GMW8 1640 aa15.86■□□□□ 0.13
TRAV20-201ENST00000390448 ADAMTS12P58397 1594 aa15.85■□□□□ 0.13
TRAV20-201ENST00000390448 NUP160Q12769 1436 aa15.84■□□□□ 0.13
TRAV20-201ENST00000390448 AEBP2Q6ZN18 517 aaPredicted RBP15.83■□□□□ 0.12
TRAV20-201ENST00000390448 CEP170Q5SW79 1584 aa15.83■□□□□ 0.12
TRAV20-201ENST00000390448 ERICH3Q5RHP9 1530 aa15.82■□□□□ 0.12
TRAV20-201ENST00000390448 ERCC6L2Q5T890 1561 aa15.81■□□□□ 0.12
TRAV20-201ENST00000390448 JPH4Q96JJ6 628 aa15.79■□□□□ 0.12
TRAV20-201ENST00000390448 PRG4Q92954 1404 aaPredicted RBP15.77■□□□□ 0.12
TRAV20-201ENST00000390448 NPM1P06748 294 aaKnown RBP eCLIP15.75■□□□□ 0.11
TRAV20-201ENST00000390448 SHROOM2Q13796 1616 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms