RNA–Protein interactions for RNA: ENST00000390426.2

TRAV4-201, Transcript of T cell receptor alpha variable 4, humanhuman

APPRIS P1 BASIC

Gene TRAV4, Length 395 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4-201ENST00000390426 NISCHQ9Y2I1 1504 aa26.65■■□□□ 1.86
TRAV4-201ENST00000390426 ABCC9O60706 1549 aa23.86■■□□□ 1.41
TRAV4-201ENST00000390426 CCDC180Q9P1Z9 1646 aa23.8■■□□□ 1.4
TRAV4-201ENST00000390426 RB1CC1Q8TDY2 1594 aa22.67■■□□□ 1.22
TRAV4-201ENST00000390426 DCAF8L2P0C7V8 631 aa22.59■■□□□ 1.21
TRAV4-201ENST00000390426 NACADO15069 1562 aa22.53■■□□□ 1.2
TRAV4-201ENST00000390426 DNAJC5BQ9UF47 199 aa22.36■■□□□ 1.17
TRAV4-201ENST00000390426 PABPN1Q86U42 306 aaKnown RBP eCLIP22.28■■□□□ 1.16
TRAV4-201ENST00000390426 MYO15BQ96JP2 1530 aa22.21■■□□□ 1.15
TRAV4-201ENST00000390426 UNC13AQ9UPW8 1703 aa22.11■■□□□ 1.13
TRAV4-201ENST00000390426 ZCCHC6Q5VYS8 1495 aaKnown RBP22.08■■□□□ 1.12
TRAV4-201ENST00000390426 BICRAQ9NZM4 1560 aa22.02■■□□□ 1.12
TRAV4-201ENST00000390426 DCAF1Q9Y4B6 1507 aa21.96■■□□□ 1.11
TRAV4-201ENST00000390426 SCRIBQ14160 1630 aa21.77■■□□□ 1.07
TRAV4-201ENST00000390426 SHROOM4Q9ULL8 1493 aa21.67■■□□□ 1.06
TRAV4-201ENST00000390426 CC2D2AQ9P2K1 1620 aa21.51■■□□□ 1.03
TRAV4-201ENST00000390426 EIF4G1Q04637 1599 aaKnown RBP21.47■■□□□ 1.03
TRAV4-201ENST00000390426 CECR2Q9BXF3 1484 aa21.46■■□□□ 1.03
TRAV4-201ENST00000390426 NCAPD3P42695 1498 aa20.82■□□□□ 0.92
TRAV4-201ENST00000390426 ATAD2BQ9ULI0 1458 aa20.78■□□□□ 0.92
TRAV4-201ENST00000390426 SMARCA4P51532 1647 aa20.75■□□□□ 0.91
TRAV4-201ENST00000390426 SMARCA2P51531 1590 aa20.7■□□□□ 0.9
TRAV4-201ENST00000390426 BAZ1AQ9NRL2 1556 aaPredicted RBP20.66■□□□□ 0.9
TRAV4-201ENST00000390426 HMGXB3Q12766 1538 aa20.63■□□□□ 0.89
TRAV4-201ENST00000390426 ERCC6Q03468 1493 aa20.58■□□□□ 0.89
TRAV4-201ENST00000390426 BAZ1BQ9UIG0 1483 aaKnown RBP20.58■□□□□ 0.89
TRAV4-201ENST00000390426 MROH2BQ7Z745 1585 aa20.55■□□□□ 0.88
TRAV4-201ENST00000390426 NESP48681 1621 aa20.52■□□□□ 0.88
TRAV4-201ENST00000390426 PEG3Q9GZU2 1588 aa20.51■□□□□ 0.87
TRAV4-201ENST00000390426 CUX2O14529 1486 aa20.48■□□□□ 0.87
TRAV4-201ENST00000390426 DNAJC5Q9H3Z4 198 aa20.46■□□□□ 0.87
TRAV4-201ENST00000390426 LAMC3Q9Y6N6 1575 aa20.31■□□□□ 0.84
TRAV4-201ENST00000390426 WIZO95785 1651 aa20.29■□□□□ 0.84
TRAV4-201ENST00000390426 PDS5BQ9NTI5 1447 aa20.24■□□□□ 0.83
TRAV4-201ENST00000390426 CADPSQ9ULU8 1353 aa20.22■□□□□ 0.83
TRAV4-201ENST00000390426 THOC2Q8NI27 1593 aaKnown RBP20.22■□□□□ 0.83
TRAV4-201ENST00000390426 KIF21AQ7Z4S6 1674 aa20.18■□□□□ 0.82
TRAV4-201ENST00000390426 RSF1Q96T23 1441 aaPredicted RBP20.16■□□□□ 0.82
TRAV4-201ENST00000390426 MRC2Q9UBG0 1479 aa20.05■□□□□ 0.8
TRAV4-201ENST00000390426 TOP2AP11388 1531 aaKnown RBP20.02■□□□□ 0.8
TRAV4-201ENST00000390426 CFTRP13569 1480 aa19.99■□□□□ 0.79
TRAV4-201ENST00000390426 FANCD2Q9BXW9 1451 aa19.99■□□□□ 0.79
TRAV4-201ENST00000390426 CEP164Q9UPV0 1460 aa19.99■□□□□ 0.79
TRAV4-201ENST00000390426 WDR62O43379 1518 aa19.97■□□□□ 0.79
TRAV4-201ENST00000390426 CCDC88BA6NC98 1476 aa19.84■□□□□ 0.77
TRAV4-201ENST00000390426 URB2Q14146 1524 aaKnown RBP19.81■□□□□ 0.76
TRAV4-201ENST00000390426 AEBP2Q6ZN18 517 aaPredicted RBP19.69■□□□□ 0.74
TRAV4-201ENST00000390426 PRDM2Q13029 1718 aa19.68■□□□□ 0.74
TRAV4-201ENST00000390426 TRIM41Q8WV44 630 aa19.64■□□□□ 0.73
TRAV4-201ENST00000390426 OSCARQ8IYS5 282 aa19.63■□□□□ 0.73
TRAV4-201ENST00000390426 TOPBP1Q92547 1522 aa19.61■□□□□ 0.73
TRAV4-201ENST00000390426 IFT140Q96RY7 1462 aa19.59■□□□□ 0.73
TRAV4-201ENST00000390426 ZNF608Q9ULD9 1512 aaPredicted RBP19.57■□□□□ 0.72
TRAV4-201ENST00000390426 ABCC8Q09428 1581 aa19.54■□□□□ 0.72
TRAV4-201ENST00000390426 DNMBPQ6XZF7 1577 aa19.52■□□□□ 0.71
TRAV4-201ENST00000390426 AQRO60306 1485 aaKnown RBP eCLIP19.42■□□□□ 0.7
TRAV4-201ENST00000390426 EIF4G3O43432 1585 aaKnown RBP19.41■□□□□ 0.7
TRAV4-201ENST00000390426 SUPT5HO00267 1087 aaKnown RBP19.41■□□□□ 0.7
TRAV4-201ENST00000390426 POLA1P09884 1462 aaPredicted RBP19.41■□□□□ 0.7
TRAV4-201ENST00000390426 TARBP1Q13395 1621 aaKnown RBP19.4■□□□□ 0.7
TRAV4-201ENST00000390426 RAD54L2Q9Y4B4 1467 aa19.37■□□□□ 0.69
TRAV4-201ENST00000390426 SOGA1O94964 1423 aa19.35■□□□□ 0.69
TRAV4-201ENST00000390426 TDRD9Q8NDG6 1382 aaKnown RBP19.33■□□□□ 0.69
TRAV4-201ENST00000390426 FBLN2P98095 1184 aa19.33■□□□□ 0.68
TRAV4-201ENST00000390426 FGD5Q6ZNL6 1462 aa19.3■□□□□ 0.68
TRAV4-201ENST00000390426 RIMBP3CA6NJZ7 1639 aa19.3■□□□□ 0.68
TRAV4-201ENST00000390426 RIMBP3BA6NNM3 1639 aa19.3■□□□□ 0.68
TRAV4-201ENST00000390426 RIMBP3Q9UFD9 1639 aa19.3■□□□□ 0.68
TRAV4-201ENST00000390426 CUX1P39880 1505 aa19.3■□□□□ 0.68
TRAV4-201ENST00000390426 ARHGEF11O15085 1522 aa19.26■□□□□ 0.67
TRAV4-201ENST00000390426 CHD1O14646 1710 aa19.25■□□□□ 0.67
TRAV4-201ENST00000390426 SNAPC4Q5SXM2 1469 aa19.2■□□□□ 0.66
TRAV4-201ENST00000390426 CYB5RLQ6IPT4 315 aa19.19■□□□□ 0.66
TRAV4-201ENST00000390426 CHMP7Q8WUX9 453 aaPredicted RBP19.17■□□□□ 0.66
TRAV4-201ENST00000390426 WDR97A6NE52 1622 aa19.16■□□□□ 0.66
TRAV4-201ENST00000390426 GRIN2BQ13224 1484 aa19.16■□□□□ 0.66
TRAV4-201ENST00000390426 MAGI1Q96QZ7 1491 aaPredicted RBP19.12■□□□□ 0.65
TRAV4-201ENST00000390426 GAPVD1Q14C86 1478 aa19.1■□□□□ 0.65
TRAV4-201ENST00000390426 ARAP1Q96P48 1450 aa19.09■□□□□ 0.65
TRAV4-201ENST00000390426 ABCA10Q8WWZ4 1543 aa19.07■□□□□ 0.64
TRAV4-201ENST00000390426 SYNJ2O15056 1496 aa19.07■□□□□ 0.64
TRAV4-201ENST00000390426 CLASP1Q7Z460 1538 aa19.05■□□□□ 0.64
TRAV4-201ENST00000390426 SYNJ1O43426 1573 aa19.04■□□□□ 0.64
TRAV4-201ENST00000390426 WRNQ14191 1432 aaPredicted RBP eCLIP19.03■□□□□ 0.64
TRAV4-201ENST00000390426 PBRM1Q86U86 1689 aa19.02■□□□□ 0.64
TRAV4-201ENST00000390426 ABCA5Q8WWZ7 1642 aa19■□□□□ 0.63
TRAV4-201ENST00000390426 TOP2BQ02880 1626 aa18.97■□□□□ 0.63
TRAV4-201ENST00000390426 TRHP20396 242 aaPredicted RBP18.96■□□□□ 0.63
TRAV4-201ENST00000390426 CHIC1Q5VXU3 224 aa18.96■□□□□ 0.63
TRAV4-201ENST00000390426 BIVM-ERCC5R4GMW8 1640 aa18.96■□□□□ 0.63
TRAV4-201ENST00000390426 GRIN2AQ12879 1464 aa18.9■□□□□ 0.62
TRAV4-201ENST00000390426 ADAMTS12P58397 1594 aa18.87■□□□□ 0.61
TRAV4-201ENST00000390426 FHAD1B1AJZ9 1412 aa18.86■□□□□ 0.61
TRAV4-201ENST00000390426 NUP160Q12769 1436 aa18.83■□□□□ 0.6
TRAV4-201ENST00000390426 CEP170Q5SW79 1584 aa18.82■□□□□ 0.6
TRAV4-201ENST00000390426 ERICH3Q5RHP9 1530 aa18.82■□□□□ 0.6
TRAV4-201ENST00000390426 ERCC6L2Q5T890 1561 aa18.8■□□□□ 0.6
TRAV4-201ENST00000390426 JPH4Q96JJ6 628 aa18.7■□□□□ 0.58
TRAV4-201ENST00000390426 SHROOM2Q13796 1616 aa18.7■□□□□ 0.58
TRAV4-201ENST00000390426 PRG4Q92954 1404 aaPredicted RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms