RNA–Protein interactions for RNA: ENST00000381565.2

APOBEC3F-202, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 3F, humanhuman

TSL 1 (best) BASIC

Gene APOBEC3F, Length 616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC3F-202ENST00000381565 NISCHQ9Y2I1 1504 aa28.49■■■□□ 2.15
APOBEC3F-202ENST00000381565 AEBP2Q6ZN18 517 aaPredicted RBP26.37■■□□□ 1.81
APOBEC3F-202ENST00000381565 CHIC1Q5VXU3 224 aa25.83■■□□□ 1.73
APOBEC3F-202ENST00000381565 ABCC9O60706 1549 aa25.5■■□□□ 1.67
APOBEC3F-202ENST00000381565 CCDC180Q9P1Z9 1646 aa25.49■■□□□ 1.67
APOBEC3F-202ENST00000381565 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
APOBEC3F-202ENST00000381565 RB1CC1Q8TDY2 1594 aa24.14■■□□□ 1.45
APOBEC3F-202ENST00000381565 NACADO15069 1562 aa23.93■■□□□ 1.42
APOBEC3F-202ENST00000381565 ZCCHC6Q5VYS8 1495 aaKnown RBP23.76■■□□□ 1.39
APOBEC3F-202ENST00000381565 MYO15BQ96JP2 1530 aa23.7■■□□□ 1.38
APOBEC3F-202ENST00000381565 PABPN1Q86U42 306 aaKnown RBP eCLIP23.69■■□□□ 1.38
APOBEC3F-202ENST00000381565 UNC13AQ9UPW8 1703 aa23.65■■□□□ 1.38
APOBEC3F-202ENST00000381565 DCAF8L2P0C7V8 631 aa23.64■■□□□ 1.37
APOBEC3F-202ENST00000381565 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
APOBEC3F-202ENST00000381565 BICRAQ9NZM4 1560 aa23.55■■□□□ 1.36
APOBEC3F-202ENST00000381565 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
APOBEC3F-202ENST00000381565 SHROOM4Q9ULL8 1493 aa23.14■■□□□ 1.29
APOBEC3F-202ENST00000381565 CC2D2AQ9P2K1 1620 aa23.04■■□□□ 1.28
APOBEC3F-202ENST00000381565 CECR2Q9BXF3 1484 aa22.99■■□□□ 1.27
APOBEC3F-202ENST00000381565 EIF4G1Q04637 1599 aaKnown RBP22.94■■□□□ 1.26
APOBEC3F-202ENST00000381565 PHF23Q9BUL5 403 aaPredicted RBP22.79■■□□□ 1.24
APOBEC3F-202ENST00000381565 DNAJC5Q9H3Z4 198 aa22.3■■□□□ 1.16
APOBEC3F-202ENST00000381565 SENP3Q9H4L4 574 aaPredicted RBP22.26■■□□□ 1.15
APOBEC3F-202ENST00000381565 SMARCA4P51532 1647 aa22.2■■□□□ 1.14
APOBEC3F-202ENST00000381565 NCAPD3P42695 1498 aa22.12■■□□□ 1.13
APOBEC3F-202ENST00000381565 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
APOBEC3F-202ENST00000381565 CUX2O14529 1486 aa22.06■■□□□ 1.12
APOBEC3F-202ENST00000381565 ATAD2BQ9ULI0 1458 aa22.03■■□□□ 1.12
APOBEC3F-202ENST00000381565 SMARCA2P51531 1590 aa21.98■■□□□ 1.11
APOBEC3F-202ENST00000381565 MROH2BQ7Z745 1585 aa21.98■■□□□ 1.11
APOBEC3F-202ENST00000381565 PEG3Q9GZU2 1588 aa21.98■■□□□ 1.11
APOBEC3F-202ENST00000381565 ERCC6Q03468 1493 aa21.97■■□□□ 1.11
APOBEC3F-202ENST00000381565 HMGXB3Q12766 1538 aa21.95■■□□□ 1.1
APOBEC3F-202ENST00000381565 NESP48681 1621 aa21.88■■□□□ 1.09
APOBEC3F-202ENST00000381565 BAZ1BQ9UIG0 1483 aaKnown RBP21.81■■□□□ 1.08
APOBEC3F-202ENST00000381565 WIZO95785 1651 aa21.8■■□□□ 1.08
APOBEC3F-202ENST00000381565 THOC2Q8NI27 1593 aaKnown RBP21.72■■□□□ 1.07
APOBEC3F-202ENST00000381565 RSF1Q96T23 1441 aaPredicted RBP21.64■■□□□ 1.06
APOBEC3F-202ENST00000381565 LAMC3Q9Y6N6 1575 aa21.64■■□□□ 1.05
APOBEC3F-202ENST00000381565 KIF21AQ7Z4S6 1674 aa21.57■■□□□ 1.04
APOBEC3F-202ENST00000381565 TOP2AP11388 1531 aaKnown RBP21.52■■□□□ 1.04
APOBEC3F-202ENST00000381565 PDS5BQ9NTI5 1447 aa21.47■■□□□ 1.03
APOBEC3F-202ENST00000381565 CADPSQ9ULU8 1353 aa21.41■■□□□ 1.02
APOBEC3F-202ENST00000381565 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
APOBEC3F-202ENST00000381565 WDR62O43379 1518 aa21.34■■□□□ 1.01
APOBEC3F-202ENST00000381565 PRDM2Q13029 1718 aa21.28■■□□□ 1
APOBEC3F-202ENST00000381565 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
APOBEC3F-202ENST00000381565 CFTRP13569 1480 aa21.2■□□□□ 0.98
APOBEC3F-202ENST00000381565 CEP164Q9UPV0 1460 aa21.2■□□□□ 0.98
APOBEC3F-202ENST00000381565 TRIM41Q8WV44 630 aa21.18■□□□□ 0.98
APOBEC3F-202ENST00000381565 FANCD2Q9BXW9 1451 aa21.18■□□□□ 0.98
APOBEC3F-202ENST00000381565 URB2Q14146 1524 aaKnown RBP21.07■□□□□ 0.96
APOBEC3F-202ENST00000381565 PLPPR3Q6T4P5 718 aa20.97■□□□□ 0.95
APOBEC3F-202ENST00000381565 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
APOBEC3F-202ENST00000381565 SUPT5HO00267 1087 aaKnown RBP20.9■□□□□ 0.94
APOBEC3F-202ENST00000381565 ZNF608Q9ULD9 1512 aaPredicted RBP20.84■□□□□ 0.93
APOBEC3F-202ENST00000381565 IFT140Q96RY7 1462 aa20.8■□□□□ 0.92
APOBEC3F-202ENST00000381565 RIMBP3CA6NJZ7 1639 aa20.79■□□□□ 0.92
APOBEC3F-202ENST00000381565 RIMBP3BA6NNM3 1639 aa20.79■□□□□ 0.92
APOBEC3F-202ENST00000381565 RIMBP3Q9UFD9 1639 aa20.79■□□□□ 0.92
APOBEC3F-202ENST00000381565 DNMBPQ6XZF7 1577 aa20.79■□□□□ 0.92
APOBEC3F-202ENST00000381565 TOPBP1Q92547 1522 aa20.78■□□□□ 0.92
APOBEC3F-202ENST00000381565 EIF4G3O43432 1585 aaKnown RBP20.71■□□□□ 0.91
APOBEC3F-202ENST00000381565 ARHGEF11O15085 1522 aa20.7■□□□□ 0.9
APOBEC3F-202ENST00000381565 ABCC8Q09428 1581 aa20.7■□□□□ 0.9
APOBEC3F-202ENST00000381565 FOXD1Q16676 465 aa20.69■□□□□ 0.9
APOBEC3F-202ENST00000381565 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.9
APOBEC3F-202ENST00000381565 CUX1P39880 1505 aa20.63■□□□□ 0.89
APOBEC3F-202ENST00000381565 POLA1P09884 1462 aaPredicted RBP20.61■□□□□ 0.89
APOBEC3F-202ENST00000381565 AQRO60306 1485 aaKnown RBP eCLIP20.59■□□□□ 0.89
APOBEC3F-202ENST00000381565 CHD1O14646 1710 aa20.57■□□□□ 0.88
APOBEC3F-202ENST00000381565 FGD5Q6ZNL6 1462 aa20.55■□□□□ 0.88
APOBEC3F-202ENST00000381565 WDR97A6NE52 1622 aa20.54■□□□□ 0.88
APOBEC3F-202ENST00000381565 BIVM-ERCC5R4GMW8 1640 aa20.51■□□□□ 0.87
APOBEC3F-202ENST00000381565 ARAP1Q96P48 1450 aa20.5■□□□□ 0.87
APOBEC3F-202ENST00000381565 RAD54L2Q9Y4B4 1467 aa20.5■□□□□ 0.87
APOBEC3F-202ENST00000381565 CYB5RLQ6IPT4 315 aa20.48■□□□□ 0.87
APOBEC3F-202ENST00000381565 SYNJ1O43426 1573 aa20.47■□□□□ 0.87
APOBEC3F-202ENST00000381565 TOP2BQ02880 1626 aa20.45■□□□□ 0.87
APOBEC3F-202ENST00000381565 SOGA1O94964 1423 aa20.43■□□□□ 0.86
APOBEC3F-202ENST00000381565 TDRD9Q8NDG6 1382 aaKnown RBP20.41■□□□□ 0.86
APOBEC3F-202ENST00000381565 FBLN2P98095 1184 aa20.39■□□□□ 0.85
APOBEC3F-202ENST00000381565 PBRM1Q86U86 1689 aa20.38■□□□□ 0.85
APOBEC3F-202ENST00000381565 SNAPC4Q5SXM2 1469 aa20.38■□□□□ 0.85
APOBEC3F-202ENST00000381565 WRNQ14191 1432 aaPredicted RBP eCLIP20.38■□□□□ 0.85
APOBEC3F-202ENST00000381565 CLASP1Q7Z460 1538 aa20.37■□□□□ 0.85
APOBEC3F-202ENST00000381565 ABCA5Q8WWZ7 1642 aa20.36■□□□□ 0.85
APOBEC3F-202ENST00000381565 ABCA10Q8WWZ4 1543 aa20.33■□□□□ 0.85
APOBEC3F-202ENST00000381565 MAGI1Q96QZ7 1491 aaPredicted RBP20.3■□□□□ 0.84
APOBEC3F-202ENST00000381565 TRHP20396 242 aaPredicted RBP20.28■□□□□ 0.84
APOBEC3F-202ENST00000381565 GRIN2BQ13224 1484 aa20.26■□□□□ 0.83
APOBEC3F-202ENST00000381565 SYNJ2O15056 1496 aa20.24■□□□□ 0.83
APOBEC3F-202ENST00000381565 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
APOBEC3F-202ENST00000381565 CHMP7Q8WUX9 453 aaPredicted RBP20.22■□□□□ 0.83
APOBEC3F-202ENST00000381565 ADAMTS12P58397 1594 aa20.16■□□□□ 0.82
APOBEC3F-202ENST00000381565 ERICH3Q5RHP9 1530 aa20.1■□□□□ 0.81
APOBEC3F-202ENST00000381565 ERCC6L2Q5T890 1561 aa20.06■□□□□ 0.8
APOBEC3F-202ENST00000381565 PPP6R1Q9UPN7 881 aa20.04■□□□□ 0.8
APOBEC3F-202ENST00000381565 GRIN2AQ12879 1464 aa20.03■□□□□ 0.8
APOBEC3F-202ENST00000381565 CEP170Q5SW79 1584 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms