RNA–Protein interactions for RNA: ENST00000379013.6

UPK1A-202, Transcript of uroplakin 1A, humanhuman

TSL 1 (best) BASIC

Gene UPK1A, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1A-202ENST00000379013 NISCHQ9Y2I1 1504 aa33.25■■■□□ 2.91
UPK1A-202ENST00000379013 CCDC180Q9P1Z9 1646 aa29.49■■■□□ 2.31
UPK1A-202ENST00000379013 ABCC9O60706 1549 aa29.48■■■□□ 2.31
UPK1A-202ENST00000379013 DCAF8L2P0C7V8 631 aa28.07■■■□□ 2.08
UPK1A-202ENST00000379013 RB1CC1Q8TDY2 1594 aa28■■■□□ 2.07
UPK1A-202ENST00000379013 NACADO15069 1562 aa27.91■■■□□ 2.06
UPK1A-202ENST00000379013 DNAJC5BQ9UF47 199 aa27.65■■■□□ 2.02
UPK1A-202ENST00000379013 PABPN1Q86U42 306 aaKnown RBP eCLIP27.63■■■□□ 2.01
UPK1A-202ENST00000379013 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
UPK1A-202ENST00000379013 ZCCHC6Q5VYS8 1495 aaKnown RBP27.58■■■□□ 2.01
UPK1A-202ENST00000379013 UNC13AQ9UPW8 1703 aa27.41■■□□□ 1.98
UPK1A-202ENST00000379013 DCAF1Q9Y4B6 1507 aa27.39■■□□□ 1.98
UPK1A-202ENST00000379013 BICRAQ9NZM4 1560 aa27.35■■□□□ 1.97
UPK1A-202ENST00000379013 SCRIBQ14160 1630 aa27.05■■□□□ 1.92
UPK1A-202ENST00000379013 SHROOM4Q9ULL8 1493 aa26.76■■□□□ 1.87
UPK1A-202ENST00000379013 EIF4G1Q04637 1599 aaKnown RBP26.57■■□□□ 1.84
UPK1A-202ENST00000379013 CC2D2AQ9P2K1 1620 aa26.57■■□□□ 1.84
UPK1A-202ENST00000379013 CECR2Q9BXF3 1484 aa26.48■■□□□ 1.83
UPK1A-202ENST00000379013 NCAPD3P42695 1498 aa25.88■■□□□ 1.73
UPK1A-202ENST00000379013 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
UPK1A-202ENST00000379013 SMARCA4P51532 1647 aa25.81■■□□□ 1.72
UPK1A-202ENST00000379013 MROH2BQ7Z745 1585 aa25.69■■□□□ 1.7
UPK1A-202ENST00000379013 BAZ1AQ9NRL2 1556 aaPredicted RBP25.69■■□□□ 1.7
UPK1A-202ENST00000379013 SMARCA2P51531 1590 aa25.65■■□□□ 1.7
UPK1A-202ENST00000379013 HMGXB3Q12766 1538 aa25.58■■□□□ 1.69
UPK1A-202ENST00000379013 PEG3Q9GZU2 1588 aa25.54■■□□□ 1.68
UPK1A-202ENST00000379013 BAZ1BQ9UIG0 1483 aaKnown RBP25.53■■□□□ 1.68
UPK1A-202ENST00000379013 NESP48681 1621 aa25.46■■□□□ 1.67
UPK1A-202ENST00000379013 WIZO95785 1651 aa25.33■■□□□ 1.65
UPK1A-202ENST00000379013 ERCC6Q03468 1493 aa25.3■■□□□ 1.64
UPK1A-202ENST00000379013 RSF1Q96T23 1441 aaPredicted RBP25.29■■□□□ 1.64
UPK1A-202ENST00000379013 CUX2O14529 1486 aa25.15■■□□□ 1.62
UPK1A-202ENST00000379013 CADPSQ9ULU8 1353 aa25.13■■□□□ 1.61
UPK1A-202ENST00000379013 LAMC3Q9Y6N6 1575 aa25.11■■□□□ 1.61
UPK1A-202ENST00000379013 DNAJC5Q9H3Z4 198 aa25.02■■□□□ 1.6
UPK1A-202ENST00000379013 PDS5BQ9NTI5 1447 aa25.02■■□□□ 1.6
UPK1A-202ENST00000379013 THOC2Q8NI27 1593 aaKnown RBP24.98■■□□□ 1.59
UPK1A-202ENST00000379013 KIF21AQ7Z4S6 1674 aa24.97■■□□□ 1.59
UPK1A-202ENST00000379013 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
UPK1A-202ENST00000379013 CFTRP13569 1480 aa24.88■■□□□ 1.57
UPK1A-202ENST00000379013 CCDC88BA6NC98 1476 aa24.81■■□□□ 1.56
UPK1A-202ENST00000379013 FANCD2Q9BXW9 1451 aa24.79■■□□□ 1.56
UPK1A-202ENST00000379013 MRC2Q9UBG0 1479 aa24.79■■□□□ 1.56
UPK1A-202ENST00000379013 CEP164Q9UPV0 1460 aa24.72■■□□□ 1.55
UPK1A-202ENST00000379013 WDR62O43379 1518 aa24.71■■□□□ 1.55
UPK1A-202ENST00000379013 URB2Q14146 1524 aaKnown RBP24.62■■□□□ 1.53
UPK1A-202ENST00000379013 SUPT5HO00267 1087 aaKnown RBP24.61■■□□□ 1.53
UPK1A-202ENST00000379013 PRDM2Q13029 1718 aa24.4■■□□□ 1.5
UPK1A-202ENST00000379013 TOPBP1Q92547 1522 aa24.36■■□□□ 1.49
UPK1A-202ENST00000379013 ZNF608Q9ULD9 1512 aaPredicted RBP24.31■■□□□ 1.48
UPK1A-202ENST00000379013 IFT140Q96RY7 1462 aa24.25■■□□□ 1.47
UPK1A-202ENST00000379013 DNMBPQ6XZF7 1577 aa24.22■■□□□ 1.47
UPK1A-202ENST00000379013 ABCC8Q09428 1581 aa24.21■■□□□ 1.47
UPK1A-202ENST00000379013 OSCARQ8IYS5 282 aa24.19■■□□□ 1.46
UPK1A-202ENST00000379013 AQRO60306 1485 aaKnown RBP eCLIP24.14■■□□□ 1.46
UPK1A-202ENST00000379013 POLA1P09884 1462 aaPredicted RBP24.14■■□□□ 1.46
UPK1A-202ENST00000379013 RAD54L2Q9Y4B4 1467 aa24.13■■□□□ 1.45
UPK1A-202ENST00000379013 TARBP1Q13395 1621 aaKnown RBP24.11■■□□□ 1.45
UPK1A-202ENST00000379013 CUX1P39880 1505 aa24.09■■□□□ 1.45
UPK1A-202ENST00000379013 SOGA1O94964 1423 aa24.07■■□□□ 1.44
UPK1A-202ENST00000379013 TDRD9Q8NDG6 1382 aaKnown RBP24.05■■□□□ 1.44
UPK1A-202ENST00000379013 TRIM41Q8WV44 630 aa24.03■■□□□ 1.44
UPK1A-202ENST00000379013 FGD5Q6ZNL6 1462 aa24.02■■□□□ 1.44
UPK1A-202ENST00000379013 EIF4G3O43432 1585 aaKnown RBP24.02■■□□□ 1.44
UPK1A-202ENST00000379013 FBLN2P98095 1184 aa23.89■■□□□ 1.41
UPK1A-202ENST00000379013 SNAPC4Q5SXM2 1469 aa23.81■■□□□ 1.4
UPK1A-202ENST00000379013 CHD1O14646 1710 aa23.78■■□□□ 1.4
UPK1A-202ENST00000379013 GRIN2BQ13224 1484 aa23.75■■□□□ 1.39
UPK1A-202ENST00000379013 RIMBP3CA6NJZ7 1639 aa23.75■■□□□ 1.39
UPK1A-202ENST00000379013 RIMBP3BA6NNM3 1639 aa23.75■■□□□ 1.39
UPK1A-202ENST00000379013 RIMBP3Q9UFD9 1639 aa23.75■■□□□ 1.39
UPK1A-202ENST00000379013 WRNQ14191 1432 aaPredicted RBP eCLIP23.75■■□□□ 1.39
UPK1A-202ENST00000379013 ABCA10Q8WWZ4 1543 aa23.74■■□□□ 1.39
UPK1A-202ENST00000379013 GAPVD1Q14C86 1478 aa23.74■■□□□ 1.39
UPK1A-202ENST00000379013 CHMP7Q8WUX9 453 aaPredicted RBP23.73■■□□□ 1.39
UPK1A-202ENST00000379013 ARHGEF11O15085 1522 aa23.73■■□□□ 1.39
UPK1A-202ENST00000379013 SYNJ1O43426 1573 aa23.73■■□□□ 1.39
UPK1A-202ENST00000379013 WDR97A6NE52 1622 aa23.73■■□□□ 1.39
UPK1A-202ENST00000379013 TOP2BQ02880 1626 aa23.68■■□□□ 1.38
UPK1A-202ENST00000379013 MAGI1Q96QZ7 1491 aaPredicted RBP23.68■■□□□ 1.38
UPK1A-202ENST00000379013 CYB5RLQ6IPT4 315 aa23.67■■□□□ 1.38
UPK1A-202ENST00000379013 BIVM-ERCC5R4GMW8 1640 aa23.64■■□□□ 1.38
UPK1A-202ENST00000379013 SYNJ2O15056 1496 aa23.63■■□□□ 1.37
UPK1A-202ENST00000379013 ABCA5Q8WWZ7 1642 aa23.63■■□□□ 1.37
UPK1A-202ENST00000379013 CLASP1Q7Z460 1538 aa23.58■■□□□ 1.36
UPK1A-202ENST00000379013 PBRM1Q86U86 1689 aa23.57■■□□□ 1.36
UPK1A-202ENST00000379013 ARAP1Q96P48 1450 aa23.56■■□□□ 1.36
UPK1A-202ENST00000379013 GRIN2AQ12879 1464 aa23.45■■□□□ 1.34
UPK1A-202ENST00000379013 FHAD1B1AJZ9 1412 aa23.43■■□□□ 1.34
UPK1A-202ENST00000379013 ADAMTS12P58397 1594 aa23.43■■□□□ 1.34
UPK1A-202ENST00000379013 NUP160Q12769 1436 aa23.4■■□□□ 1.34
UPK1A-202ENST00000379013 ERICH3Q5RHP9 1530 aa23.39■■□□□ 1.34
UPK1A-202ENST00000379013 CEP170Q5SW79 1584 aa23.38■■□□□ 1.33
UPK1A-202ENST00000379013 IGF1RP08069 1367 aa23.37■■□□□ 1.33
UPK1A-202ENST00000379013 ERCC6L2Q5T890 1561 aa23.35■■□□□ 1.33
UPK1A-202ENST00000379013 CHIC1Q5VXU3 224 aa23.26■■□□□ 1.31
UPK1A-202ENST00000379013 KIF27Q86VH2 1401 aa23.25■■□□□ 1.31
UPK1A-202ENST00000379013 JPH4Q96JJ6 628 aa23.25■■□□□ 1.31
UPK1A-202ENST00000379013 TRHP20396 242 aaPredicted RBP23.23■■□□□ 1.31
UPK1A-202ENST00000379013 SHROOM2Q13796 1616 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms