RNA–Protein interactions for RNA: ENST00000376724.6

TRIM40-206, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRIM40, Length 2,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-206ENST00000376724 NISCHQ9Y2I1 1504 aa28.76■■■□□ 2.19
TRIM40-206ENST00000376724 CCDC180Q9P1Z9 1646 aa24.91■■□□□ 1.58
TRIM40-206ENST00000376724 ZCCHC6Q5VYS8 1495 aaKnown RBP24.17■■□□□ 1.46
TRIM40-206ENST00000376724 DCAF8L2P0C7V8 631 aa23.98■■□□□ 1.43
TRIM40-206ENST00000376724 SHROOM4Q9ULL8 1493 aa23.81■■□□□ 1.4
TRIM40-206ENST00000376724 DCAF1Q9Y4B6 1507 aa23.67■■□□□ 1.38
TRIM40-206ENST00000376724 ABCC9O60706 1549 aa23.63■■□□□ 1.37
TRIM40-206ENST00000376724 MYO15BQ96JP2 1530 aa23.3■■□□□ 1.32
TRIM40-206ENST00000376724 NACADO15069 1562 aa23.2■■□□□ 1.3
TRIM40-206ENST00000376724 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
TRIM40-206ENST00000376724 RB1CC1Q8TDY2 1594 aa23■■□□□ 1.27
TRIM40-206ENST00000376724 SUPT5HO00267 1087 aaKnown RBP22.99■■□□□ 1.27
TRIM40-206ENST00000376724 UNC13AQ9UPW8 1703 aa22.56■■□□□ 1.2
TRIM40-206ENST00000376724 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
TRIM40-206ENST00000376724 RSF1Q96T23 1441 aaPredicted RBP22.42■■□□□ 1.18
TRIM40-206ENST00000376724 PABPN1Q86U42 306 aaKnown RBP eCLIP22.39■■□□□ 1.17
TRIM40-206ENST00000376724 BICRAQ9NZM4 1560 aa22.31■■□□□ 1.16
TRIM40-206ENST00000376724 MROH2BQ7Z745 1585 aa22.28■■□□□ 1.16
TRIM40-206ENST00000376724 BAZ1AQ9NRL2 1556 aaPredicted RBP22.18■■□□□ 1.14
TRIM40-206ENST00000376724 WIZO95785 1651 aa22.12■■□□□ 1.13
TRIM40-206ENST00000376724 SMARCA4P51532 1647 aa22.08■■□□□ 1.12
TRIM40-206ENST00000376724 CHIC1Q5VXU3 224 aa21.99■■□□□ 1.11
TRIM40-206ENST00000376724 TOP2AP11388 1531 aaKnown RBP21.82■■□□□ 1.08
TRIM40-206ENST00000376724 PEG3Q9GZU2 1588 aa21.72■■□□□ 1.07
TRIM40-206ENST00000376724 ATAD2BQ9ULI0 1458 aa21.69■■□□□ 1.06
TRIM40-206ENST00000376724 CCDC88BA6NC98 1476 aa21.67■■□□□ 1.06
TRIM40-206ENST00000376724 SMARCA2P51531 1590 aa21.65■■□□□ 1.06
TRIM40-206ENST00000376724 EIF4G1Q04637 1599 aaKnown RBP21.65■■□□□ 1.06
TRIM40-206ENST00000376724 BAZ1BQ9UIG0 1483 aaKnown RBP21.6■■□□□ 1.05
TRIM40-206ENST00000376724 TRIM41Q8WV44 630 aa21.54■■□□□ 1.04
TRIM40-206ENST00000376724 NCAPD3P42695 1498 aa21.44■■□□□ 1.02
TRIM40-206ENST00000376724 HMGXB3Q12766 1538 aa21.39■■□□□ 1.01
TRIM40-206ENST00000376724 CC2D2AQ9P2K1 1620 aa21.31■■□□□ 1
TRIM40-206ENST00000376724 ABCC8Q09428 1581 aa21.31■■□□□ 1
TRIM40-206ENST00000376724 LOC105371045A0A1W2PR82 267 aa21.26■□□□□ 0.99
TRIM40-206ENST00000376724 FAM9AQ8IZU1 332 aaPredicted RBP21.26■□□□□ 0.99
TRIM40-206ENST00000376724 WRNQ14191 1432 aaPredicted RBP eCLIP21.1■□□□□ 0.97
TRIM40-206ENST00000376724 EHMT2Q96KQ7 1210 aa21.05■□□□□ 0.96
TRIM40-206ENST00000376724 CFTRP13569 1480 aa21.02■□□□□ 0.96
TRIM40-206ENST00000376724 SYNJ1O43426 1573 aa21■□□□□ 0.95
TRIM40-206ENST00000376724 CADPSQ9ULU8 1353 aa20.95■□□□□ 0.94
TRIM40-206ENST00000376724 SOGA1O94964 1423 aa20.95■□□□□ 0.94
TRIM40-206ENST00000376724 RUSC2Q8N2Y8 1516 aa20.87■□□□□ 0.93
TRIM40-206ENST00000376724 DNAJC5BQ9UF47 199 aa20.87■□□□□ 0.93
TRIM40-206ENST00000376724 PRDM2Q13029 1718 aa20.86■□□□□ 0.93
TRIM40-206ENST00000376724 TOP2BQ02880 1626 aa20.86■□□□□ 0.93
TRIM40-206ENST00000376724 BIVM-ERCC5R4GMW8 1640 aa20.81■□□□□ 0.92
TRIM40-206ENST00000376724 EEA1Q15075 1411 aa20.8■□□□□ 0.92
TRIM40-206ENST00000376724 CUX1P39880 1505 aa20.8■□□□□ 0.92
TRIM40-206ENST00000376724 CSRNP3Q8WYN3 585 aa20.8■□□□□ 0.92
TRIM40-206ENST00000376724 NESP48681 1621 aa20.79■□□□□ 0.92
TRIM40-206ENST00000376724 FANCD2Q9BXW9 1451 aa20.74■□□□□ 0.91
TRIM40-206ENST00000376724 LAMC3Q9Y6N6 1575 aa20.67■□□□□ 0.9
TRIM40-206ENST00000376724 UBTFP17480 764 aaKnown RBP20.63■□□□□ 0.89
TRIM40-206ENST00000376724 GOLGA3Q08378 1498 aa20.59■□□□□ 0.89
TRIM40-206ENST00000376724 CEP164Q9UPV0 1460 aa20.57■□□□□ 0.88
TRIM40-206ENST00000376724 FGD5Q6ZNL6 1462 aa20.57■□□□□ 0.88
TRIM40-206ENST00000376724 PDS5BQ9NTI5 1447 aa20.56■□□□□ 0.88
TRIM40-206ENST00000376724 TNIKQ9UKE5 1360 aa20.55■□□□□ 0.88
TRIM40-206ENST00000376724 KIF27Q86VH2 1401 aa20.55■□□□□ 0.88
TRIM40-206ENST00000376724 KIF21BO75037 1637 aa20.54■□□□□ 0.88
TRIM40-206ENST00000376724 DNMBPQ6XZF7 1577 aa20.53■□□□□ 0.88
TRIM40-206ENST00000376724 TOPBP1Q92547 1522 aa20.51■□□□□ 0.87
TRIM40-206ENST00000376724 CEP162Q5TB80 1403 aa20.5■□□□□ 0.87
TRIM40-206ENST00000376724 CUX2O14529 1486 aa20.49■□□□□ 0.87
TRIM40-206ENST00000376724 RAPGEF2Q9Y4G8 1499 aa20.49■□□□□ 0.87
TRIM40-206ENST00000376724 KIF21AQ7Z4S6 1674 aa20.47■□□□□ 0.87
TRIM40-206ENST00000376724 URB2Q14146 1524 aaKnown RBP20.46■□□□□ 0.87
TRIM40-206ENST00000376724 PCGF6Q9BYE7 350 aa20.46■□□□□ 0.87
TRIM40-206ENST00000376724 POLA1P09884 1462 aaPredicted RBP20.44■□□□□ 0.86
TRIM40-206ENST00000376724 RAD54L2Q9Y4B4 1467 aa20.43■□□□□ 0.86
TRIM40-206ENST00000376724 PRXQ9BXM0 1461 aa20.41■□□□□ 0.86
TRIM40-206ENST00000376724 RANGAP1P46060 587 aaPredicted RBP20.37■□□□□ 0.85
TRIM40-206ENST00000376724 IGF1RP08069 1367 aa20.36■□□□□ 0.85
TRIM40-206ENST00000376724 ERICH3Q5RHP9 1530 aa20.36■□□□□ 0.85
TRIM40-206ENST00000376724 ABCA10Q8WWZ4 1543 aa20.34■□□□□ 0.85
TRIM40-206ENST00000376724 PPARGC1BQ86YN6 1023 aaKnown RBP20.33■□□□□ 0.85
TRIM40-206ENST00000376724 TRIM26Q12899 539 aaPredicted RBP20.32■□□□□ 0.84
TRIM40-206ENST00000376724 CLIP1P30622 1438 aa20.3■□□□□ 0.84
TRIM40-206ENST00000376724 MRC2Q9UBG0 1479 aa20.28■□□□□ 0.84
TRIM40-206ENST00000376724 CARMIL1Q5VZK9 1371 aa20.28■□□□□ 0.84
TRIM40-206ENST00000376724 TDRD9Q8NDG6 1382 aaKnown RBP20.24■□□□□ 0.83
TRIM40-206ENST00000376724 ERCC6Q03468 1493 aa20.23■□□□□ 0.83
TRIM40-206ENST00000376724 WDR97A6NE52 1622 aa20.23■□□□□ 0.83
TRIM40-206ENST00000376724 TTBK1Q5TCY1 1321 aaPredicted RBP20.17■□□□□ 0.82
TRIM40-206ENST00000376724 TARBP1Q13395 1621 aaKnown RBP20.16■□□□□ 0.82
TRIM40-206ENST00000376724 GAPVD1Q14C86 1478 aa20.16■□□□□ 0.82
TRIM40-206ENST00000376724 ABCA5Q8WWZ7 1642 aa20.15■□□□□ 0.82
TRIM40-206ENST00000376724 WDR62O43379 1518 aa20.13■□□□□ 0.81
TRIM40-206ENST00000376724 VPS8Q8N3P4 1428 aa20.11■□□□□ 0.81
TRIM40-206ENST00000376724 CUL7Q14999 1698 aa20.11■□□□□ 0.81
TRIM40-206ENST00000376724 AQRO60306 1485 aaKnown RBP eCLIP20.07■□□□□ 0.8
TRIM40-206ENST00000376724 ARAP1Q96P48 1450 aa20.06■□□□□ 0.8
TRIM40-206ENST00000376724 THOC2Q8NI27 1593 aaKnown RBP20.05■□□□□ 0.8
TRIM40-206ENST00000376724 IFT140Q96RY7 1462 aa20.05■□□□□ 0.8
TRIM40-206ENST00000376724 ARHGAP35Q9NRY4 1499 aa20.03■□□□□ 0.8
TRIM40-206ENST00000376724 APLP2Q06481 763 aa20.02■□□□□ 0.8
TRIM40-206ENST00000376724 ZNF608Q9ULD9 1512 aaPredicted RBP20.01■□□□□ 0.79
TRIM40-206ENST00000376724 PBRM1Q86U86 1689 aa20■□□□□ 0.79
TRIM40-206ENST00000376724 GRIN2BQ13224 1484 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms