RNA–Protein interactions for RNA: ENST00000374813.1

HLA-DOA-202, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

Gene HLA-DOA, Length 303 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-202ENST00000374813 NISCHQ9Y2I1 1504 aa24.14■■□□□ 1.45
HLA-DOA-202ENST00000374813 ABCC9O60706 1549 aa22.52■■□□□ 1.2
HLA-DOA-202ENST00000374813 CCDC180Q9P1Z9 1646 aa21.91■■□□□ 1.1
HLA-DOA-202ENST00000374813 DNAJC5BQ9UF47 199 aa21.71■■□□□ 1.07
HLA-DOA-202ENST00000374813 RB1CC1Q8TDY2 1594 aa21.2■□□□□ 0.98
HLA-DOA-202ENST00000374813 NACADO15069 1562 aa20.92■□□□□ 0.94
HLA-DOA-202ENST00000374813 PABPN1Q86U42 306 aaKnown RBP eCLIP20.91■□□□□ 0.94
HLA-DOA-202ENST00000374813 DCAF8L2P0C7V8 631 aa20.75■□□□□ 0.91
HLA-DOA-202ENST00000374813 UNC13AQ9UPW8 1703 aa20.64■□□□□ 0.89
HLA-DOA-202ENST00000374813 BICRAQ9NZM4 1560 aa20.53■□□□□ 0.88
HLA-DOA-202ENST00000374813 DNAJC5Q9H3Z4 198 aa20.49■□□□□ 0.87
HLA-DOA-202ENST00000374813 MYO15BQ96JP2 1530 aa20.44■□□□□ 0.86
HLA-DOA-202ENST00000374813 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
HLA-DOA-202ENST00000374813 CC2D2AQ9P2K1 1620 aa20.31■□□□□ 0.84
HLA-DOA-202ENST00000374813 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
HLA-DOA-202ENST00000374813 EIF4G1Q04637 1599 aaKnown RBP20.12■□□□□ 0.81
HLA-DOA-202ENST00000374813 DCAF1Q9Y4B6 1507 aa19.92■□□□□ 0.78
HLA-DOA-202ENST00000374813 SCRIBQ14160 1630 aa19.88■□□□□ 0.77
HLA-DOA-202ENST00000374813 ZCCHC6Q5VYS8 1495 aaKnown RBP19.83■□□□□ 0.76
HLA-DOA-202ENST00000374813 CUX2O14529 1486 aa19.73■□□□□ 0.75
HLA-DOA-202ENST00000374813 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
HLA-DOA-202ENST00000374813 NCAPD3P42695 1498 aa19.33■□□□□ 0.68
HLA-DOA-202ENST00000374813 TRIM41Q8WV44 630 aa19.29■□□□□ 0.68
HLA-DOA-202ENST00000374813 ATAD2BQ9ULI0 1458 aa19.15■□□□□ 0.66
HLA-DOA-202ENST00000374813 NESP48681 1621 aa19.14■□□□□ 0.65
HLA-DOA-202ENST00000374813 HMGXB3Q12766 1538 aa19.09■□□□□ 0.65
HLA-DOA-202ENST00000374813 SMARCA2P51531 1590 aa19.08■□□□□ 0.65
HLA-DOA-202ENST00000374813 THOC2Q8NI27 1593 aaKnown RBP19.05■□□□□ 0.64
HLA-DOA-202ENST00000374813 LAMC3Q9Y6N6 1575 aa18.98■□□□□ 0.63
HLA-DOA-202ENST00000374813 PDS5BQ9NTI5 1447 aa18.94■□□□□ 0.62
HLA-DOA-202ENST00000374813 BAZ1BQ9UIG0 1483 aaKnown RBP18.94■□□□□ 0.62
HLA-DOA-202ENST00000374813 SMARCA4P51532 1647 aa18.92■□□□□ 0.62
HLA-DOA-202ENST00000374813 KIF21AQ7Z4S6 1674 aa18.86■□□□□ 0.61
HLA-DOA-202ENST00000374813 OSCARQ8IYS5 282 aa18.82■□□□□ 0.6
HLA-DOA-202ENST00000374813 BAZ1AQ9NRL2 1556 aaPredicted RBP18.8■□□□□ 0.6
HLA-DOA-202ENST00000374813 PEG3Q9GZU2 1588 aa18.78■□□□□ 0.6
HLA-DOA-202ENST00000374813 MRC2Q9UBG0 1479 aa18.74■□□□□ 0.59
HLA-DOA-202ENST00000374813 CADPSQ9ULU8 1353 aa18.72■□□□□ 0.59
HLA-DOA-202ENST00000374813 WDR62O43379 1518 aa18.69■□□□□ 0.58
HLA-DOA-202ENST00000374813 CEP164Q9UPV0 1460 aa18.55■□□□□ 0.56
HLA-DOA-202ENST00000374813 MROH2BQ7Z745 1585 aa18.55■□□□□ 0.56
HLA-DOA-202ENST00000374813 RIMBP3CA6NJZ7 1639 aa18.49■□□□□ 0.55
HLA-DOA-202ENST00000374813 RIMBP3BA6NNM3 1639 aa18.49■□□□□ 0.55
HLA-DOA-202ENST00000374813 RIMBP3Q9UFD9 1639 aa18.49■□□□□ 0.55
HLA-DOA-202ENST00000374813 FANCD2Q9BXW9 1451 aa18.47■□□□□ 0.55
HLA-DOA-202ENST00000374813 TRHP20396 242 aaPredicted RBP18.4■□□□□ 0.54
HLA-DOA-202ENST00000374813 CYB5RLQ6IPT4 315 aa18.38■□□□□ 0.53
HLA-DOA-202ENST00000374813 ARHGEF11O15085 1522 aa18.38■□□□□ 0.53
HLA-DOA-202ENST00000374813 AEBP2Q6ZN18 517 aaPredicted RBP18.37■□□□□ 0.53
HLA-DOA-202ENST00000374813 CFTRP13569 1480 aa18.35■□□□□ 0.53
HLA-DOA-202ENST00000374813 URB2Q14146 1524 aaKnown RBP18.32■□□□□ 0.52
HLA-DOA-202ENST00000374813 WIZO95785 1651 aa18.28■□□□□ 0.52
HLA-DOA-202ENST00000374813 IFT140Q96RY7 1462 aa18.22■□□□□ 0.51
HLA-DOA-202ENST00000374813 ZNF608Q9ULD9 1512 aaPredicted RBP18.19■□□□□ 0.5
HLA-DOA-202ENST00000374813 ARAP1Q96P48 1450 aa18.14■□□□□ 0.49
HLA-DOA-202ENST00000374813 RSF1Q96T23 1441 aaPredicted RBP18.11■□□□□ 0.49
HLA-DOA-202ENST00000374813 FBLN2P98095 1184 aa18.07■□□□□ 0.48
HLA-DOA-202ENST00000374813 PRDM2Q13029 1718 aa18.06■□□□□ 0.48
HLA-DOA-202ENST00000374813 ABCC8Q09428 1581 aa18.05■□□□□ 0.48
HLA-DOA-202ENST00000374813 EIF4G3O43432 1585 aaKnown RBP18.04■□□□□ 0.48
HLA-DOA-202ENST00000374813 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
HLA-DOA-202ENST00000374813 TOPBP1Q92547 1522 aa18.03■□□□□ 0.48
HLA-DOA-202ENST00000374813 CHD1O14646 1710 aa18.03■□□□□ 0.48
HLA-DOA-202ENST00000374813 AQRO60306 1485 aaKnown RBP eCLIP17.99■□□□□ 0.47
HLA-DOA-202ENST00000374813 DNMBPQ6XZF7 1577 aa17.91■□□□□ 0.46
HLA-DOA-202ENST00000374813 TARBP1Q13395 1621 aaKnown RBP17.9■□□□□ 0.46
HLA-DOA-202ENST00000374813 CHMP7Q8WUX9 453 aaPredicted RBP17.87■□□□□ 0.45
HLA-DOA-202ENST00000374813 CCDC88BA6NC98 1476 aa17.86■□□□□ 0.45
HLA-DOA-202ENST00000374813 CLASP1Q7Z460 1538 aa17.82■□□□□ 0.44
HLA-DOA-202ENST00000374813 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
HLA-DOA-202ENST00000374813 POLA1P09884 1462 aaPredicted RBP17.81■□□□□ 0.44
HLA-DOA-202ENST00000374813 TDRD9Q8NDG6 1382 aaKnown RBP17.79■□□□□ 0.44
HLA-DOA-202ENST00000374813 SOGA1O94964 1423 aa17.77■□□□□ 0.44
HLA-DOA-202ENST00000374813 SNAPC4Q5SXM2 1469 aa17.75■□□□□ 0.43
HLA-DOA-202ENST00000374813 GAPVD1Q14C86 1478 aa17.74■□□□□ 0.43
HLA-DOA-202ENST00000374813 MAGI1Q96QZ7 1491 aaPredicted RBP17.74■□□□□ 0.43
HLA-DOA-202ENST00000374813 RAD54L2Q9Y4B4 1467 aa17.74■□□□□ 0.43
HLA-DOA-202ENST00000374813 WDR97A6NE52 1622 aa17.73■□□□□ 0.43
HLA-DOA-202ENST00000374813 SYNJ2O15056 1496 aa17.69■□□□□ 0.42
HLA-DOA-202ENST00000374813 GRIN2BQ13224 1484 aa17.67■□□□□ 0.42
HLA-DOA-202ENST00000374813 FGD5Q6ZNL6 1462 aa17.6■□□□□ 0.41
HLA-DOA-202ENST00000374813 ILDR1Q86SU0 546 aaPredicted RBP17.57■□□□□ 0.4
HLA-DOA-202ENST00000374813 PBRM1Q86U86 1689 aa17.48■□□□□ 0.39
HLA-DOA-202ENST00000374813 KIF13AQ9H1H9 1805 aa17.47■□□□□ 0.39
HLA-DOA-202ENST00000374813 CUX1P39880 1505 aa17.46■□□□□ 0.39
HLA-DOA-202ENST00000374813 ERCC6L2Q5T890 1561 aa17.45■□□□□ 0.38
HLA-DOA-202ENST00000374813 KDM4FA0A1W2PPD8 638 aa17.43■□□□□ 0.38
HLA-DOA-202ENST00000374813 FAM69CQ0P6D2 419 aa17.43■□□□□ 0.38
HLA-DOA-202ENST00000374813 CEP170Q5SW79 1584 aa17.43■□□□□ 0.38
HLA-DOA-202ENST00000374813 GRIN2AQ12879 1464 aa17.42■□□□□ 0.38
HLA-DOA-202ENST00000374813 NPM1P06748 294 aaKnown RBP eCLIP17.4■□□□□ 0.38
HLA-DOA-202ENST00000374813 ABCA10Q8WWZ4 1543 aa17.39■□□□□ 0.37
HLA-DOA-202ENST00000374813 NUP160Q12769 1436 aa17.38■□□□□ 0.37
HLA-DOA-202ENST00000374813 ABCA5Q8WWZ7 1642 aa17.36■□□□□ 0.37
HLA-DOA-202ENST00000374813 ABCC10Q5T3U5 1492 aa17.36■□□□□ 0.37
HLA-DOA-202ENST00000374813 SHROOM2Q13796 1616 aa17.35■□□□□ 0.37
HLA-DOA-202ENST00000374813 PRG4Q92954 1404 aaPredicted RBP17.3■□□□□ 0.36
HLA-DOA-202ENST00000374813 JPH4Q96JJ6 628 aa17.3■□□□□ 0.36
HLA-DOA-202ENST00000374813 FHAD1B1AJZ9 1412 aa17.29■□□□□ 0.36
HLA-DOA-202ENST00000374813 KDM6BO15054 1643 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms