RNA–Protein interactions for RNA: ENST00000373492.6

PBX3-205, Transcript of PBX homeobox 3, humanhuman

TSL 1 (best)

Gene PBX3, Length 950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX3-205ENST00000373492 NISCHQ9Y2I1 1504 aa44.25■■■■■ 4.67
PBX3-205ENST00000373492 CCDC180Q9P1Z9 1646 aa39.35■■■■□ 3.89
PBX3-205ENST00000373492 ABCC9O60706 1549 aa38.58■■■■□ 3.77
PBX3-205ENST00000373492 RB1CC1Q8TDY2 1594 aa37.11■■■■□ 3.53
PBX3-205ENST00000373492 NACADO15069 1562 aa37.07■■■■□ 3.52
PBX3-205ENST00000373492 DCAF8L2P0C7V8 631 aa37■■■■□ 3.51
PBX3-205ENST00000373492 MYO15BQ96JP2 1530 aa36.85■■■■□ 3.49
PBX3-205ENST00000373492 ZCCHC6Q5VYS8 1495 aaKnown RBP36.83■■■■□ 3.49
PBX3-205ENST00000373492 DCAF1Q9Y4B6 1507 aa36.64■■■■□ 3.46
PBX3-205ENST00000373492 UNC13AQ9UPW8 1703 aa36.17■■■■□ 3.38
PBX3-205ENST00000373492 PABPN1Q86U42 306 aaKnown RBP eCLIP36.06■■■■□ 3.36
PBX3-205ENST00000373492 BICRAQ9NZM4 1560 aa35.95■■■■□ 3.35
PBX3-205ENST00000373492 SCRIBQ14160 1630 aa35.86■■■■□ 3.33
PBX3-205ENST00000373492 SHROOM4Q9ULL8 1493 aa35.66■■■■□ 3.3
PBX3-205ENST00000373492 DNAJC5BQ9UF47 199 aa35.51■■■■□ 3.28
PBX3-205ENST00000373492 EIF4G1Q04637 1599 aaKnown RBP35.03■■■■□ 3.2
PBX3-205ENST00000373492 CC2D2AQ9P2K1 1620 aa34.9■■■■□ 3.18
PBX3-205ENST00000373492 CECR2Q9BXF3 1484 aa34.71■■■■□ 3.15
PBX3-205ENST00000373492 SMARCA4P51532 1647 aa34.32■■■■□ 3.08
PBX3-205ENST00000373492 BAZ1AQ9NRL2 1556 aaPredicted RBP34.31■■■■□ 3.08
PBX3-205ENST00000373492 NCAPD3P42695 1498 aa34.22■■■■□ 3.07
PBX3-205ENST00000373492 ATAD2BQ9ULI0 1458 aa34.2■■■■□ 3.07
PBX3-205ENST00000373492 SMARCA2P51531 1590 aa34.15■■■■□ 3.06
PBX3-205ENST00000373492 MROH2BQ7Z745 1585 aa34.07■■■■□ 3.05
PBX3-205ENST00000373492 PEG3Q9GZU2 1588 aa34.02■■■■□ 3.04
PBX3-205ENST00000373492 HMGXB3Q12766 1538 aa34.01■■■■□ 3.04
PBX3-205ENST00000373492 BAZ1BQ9UIG0 1483 aaKnown RBP33.9■■■■□ 3.02
PBX3-205ENST00000373492 RSF1Q96T23 1441 aaPredicted RBP33.68■■■□□ 2.98
PBX3-205ENST00000373492 WIZO95785 1651 aa33.67■■■□□ 2.98
PBX3-205ENST00000373492 TOP2AP11388 1531 aaKnown RBP33.35■■■□□ 2.93
PBX3-205ENST00000373492 NESP48681 1621 aa33.35■■■□□ 2.93
PBX3-205ENST00000373492 LAMC3Q9Y6N6 1575 aa33.3■■■□□ 2.92
PBX3-205ENST00000373492 ERCC6Q03468 1493 aa33.29■■■□□ 2.92
PBX3-205ENST00000373492 CADPSQ9ULU8 1353 aa33.21■■■□□ 2.91
PBX3-205ENST00000373492 PDS5BQ9NTI5 1447 aa33.11■■■□□ 2.89
PBX3-205ENST00000373492 CUX2O14529 1486 aa32.99■■■□□ 2.87
PBX3-205ENST00000373492 CFTRP13569 1480 aa32.99■■■□□ 2.87
PBX3-205ENST00000373492 CCDC88BA6NC98 1476 aa32.98■■■□□ 2.87
PBX3-205ENST00000373492 SUPT5HO00267 1087 aaKnown RBP32.94■■■□□ 2.86
PBX3-205ENST00000373492 KIF21AQ7Z4S6 1674 aa32.91■■■□□ 2.86
PBX3-205ENST00000373492 THOC2Q8NI27 1593 aaKnown RBP32.86■■■□□ 2.85
PBX3-205ENST00000373492 FANCD2Q9BXW9 1451 aa32.8■■■□□ 2.84
PBX3-205ENST00000373492 CEP164Q9UPV0 1460 aa32.77■■■□□ 2.84
PBX3-205ENST00000373492 MRC2Q9UBG0 1479 aa32.74■■■□□ 2.83
PBX3-205ENST00000373492 PRDM2Q13029 1718 aa32.68■■■□□ 2.82
PBX3-205ENST00000373492 WDR62O43379 1518 aa32.63■■■□□ 2.81
PBX3-205ENST00000373492 URB2Q14146 1524 aaKnown RBP32.46■■■□□ 2.79
PBX3-205ENST00000373492 ABCC8Q09428 1581 aa32.31■■■□□ 2.76
PBX3-205ENST00000373492 TOPBP1Q92547 1522 aa32.26■■■□□ 2.76
PBX3-205ENST00000373492 DNMBPQ6XZF7 1577 aa32.21■■■□□ 2.75
PBX3-205ENST00000373492 IFT140Q96RY7 1462 aa32.11■■■□□ 2.73
PBX3-205ENST00000373492 DNAJC5Q9H3Z4 198 aa32.1■■■□□ 2.73
PBX3-205ENST00000373492 POLA1P09884 1462 aaPredicted RBP31.98■■■□□ 2.71
PBX3-205ENST00000373492 CUX1P39880 1505 aa31.97■■■□□ 2.71
PBX3-205ENST00000373492 ZNF608Q9ULD9 1512 aaPredicted RBP31.93■■■□□ 2.7
PBX3-205ENST00000373492 TARBP1Q13395 1621 aaKnown RBP31.89■■■□□ 2.7
PBX3-205ENST00000373492 SOGA1O94964 1423 aa31.88■■■□□ 2.69
PBX3-205ENST00000373492 FGD5Q6ZNL6 1462 aa31.88■■■□□ 2.69
PBX3-205ENST00000373492 RAD54L2Q9Y4B4 1467 aa31.83■■■□□ 2.69
PBX3-205ENST00000373492 EIF4G3O43432 1585 aaKnown RBP31.77■■■□□ 2.68
PBX3-205ENST00000373492 WRNQ14191 1432 aaPredicted RBP eCLIP31.76■■■□□ 2.68
PBX3-205ENST00000373492 AQRO60306 1485 aaKnown RBP eCLIP31.75■■■□□ 2.67
PBX3-205ENST00000373492 WDR97A6NE52 1622 aa31.69■■■□□ 2.66
PBX3-205ENST00000373492 TDRD9Q8NDG6 1382 aaKnown RBP31.68■■■□□ 2.66
PBX3-205ENST00000373492 TOP2BQ02880 1626 aa31.68■■■□□ 2.66
PBX3-205ENST00000373492 BIVM-ERCC5R4GMW8 1640 aa31.67■■■□□ 2.66
PBX3-205ENST00000373492 OSCARQ8IYS5 282 aa31.64■■■□□ 2.66
PBX3-205ENST00000373492 SYNJ1O43426 1573 aa31.64■■■□□ 2.65
PBX3-205ENST00000373492 ABCA10Q8WWZ4 1543 aa31.6■■■□□ 2.65
PBX3-205ENST00000373492 GRIN2BQ13224 1484 aa31.51■■■□□ 2.63
PBX3-205ENST00000373492 GAPVD1Q14C86 1478 aa31.49■■■□□ 2.63
PBX3-205ENST00000373492 SNAPC4Q5SXM2 1469 aa31.45■■■□□ 2.62
PBX3-205ENST00000373492 ABCA5Q8WWZ7 1642 aa31.44■■■□□ 2.62
PBX3-205ENST00000373492 MAGI1Q96QZ7 1491 aaPredicted RBP31.44■■■□□ 2.62
PBX3-205ENST00000373492 FBLN2P98095 1184 aa31.4■■■□□ 2.62
PBX3-205ENST00000373492 CHD1O14646 1710 aa31.36■■■□□ 2.61
PBX3-205ENST00000373492 PBRM1Q86U86 1689 aa31.36■■■□□ 2.61
PBX3-205ENST00000373492 CHMP7Q8WUX9 453 aaPredicted RBP31.33■■■□□ 2.61
PBX3-205ENST00000373492 SYNJ2O15056 1496 aa31.32■■■□□ 2.6
PBX3-205ENST00000373492 ERICH3Q5RHP9 1530 aa31.22■■■□□ 2.59
PBX3-205ENST00000373492 FHAD1B1AJZ9 1412 aa31.15■■■□□ 2.58
PBX3-205ENST00000373492 ADAMTS12P58397 1594 aa31.14■■■□□ 2.58
PBX3-205ENST00000373492 KIF27Q86VH2 1401 aa31.13■■■□□ 2.57
PBX3-205ENST00000373492 TRIM41Q8WV44 630 aa31.11■■■□□ 2.57
PBX3-205ENST00000373492 GRIN2AQ12879 1464 aa31.08■■■□□ 2.57
PBX3-205ENST00000373492 CLASP1Q7Z460 1538 aa31.08■■■□□ 2.57
PBX3-205ENST00000373492 ARHGEF11O15085 1522 aa31.07■■■□□ 2.56
PBX3-205ENST00000373492 RIMBP3CA6NJZ7 1639 aa31.05■■■□□ 2.56
PBX3-205ENST00000373492 RIMBP3BA6NNM3 1639 aa31.05■■■□□ 2.56
PBX3-205ENST00000373492 RIMBP3Q9UFD9 1639 aa31.05■■■□□ 2.56
PBX3-205ENST00000373492 IGF1RP08069 1367 aa31.03■■■□□ 2.56
PBX3-205ENST00000373492 NUP160Q12769 1436 aa30.98■■■□□ 2.55
PBX3-205ENST00000373492 CEP170Q5SW79 1584 aa30.91■■■□□ 2.54
PBX3-205ENST00000373492 CUL7Q14999 1698 aa30.89■■■□□ 2.54
PBX3-205ENST00000373492 CHIC1Q5VXU3 224 aa30.87■■■□□ 2.53
PBX3-205ENST00000373492 CARMIL1Q5VZK9 1371 aa30.82■■■□□ 2.52
PBX3-205ENST00000373492 CYB5RLQ6IPT4 315 aa30.81■■■□□ 2.52
PBX3-205ENST00000373492 ARAP1Q96P48 1450 aa30.81■■■□□ 2.52
PBX3-205ENST00000373492 RUSC2Q8N2Y8 1516 aa30.75■■■□□ 2.51
PBX3-205ENST00000373492 SHROOM2Q13796 1616 aa30.71■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms