RNA–Protein interactions for RNA: ENST00000372837.3

CHCHD1-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 1, humanhuman

TSL 2 BASIC

Gene CHCHD1, Length 1,202 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD1-202ENST00000372837 NISCHQ9Y2I1 1504 aa29.86■■■□□ 2.37
CHCHD1-202ENST00000372837 ABCC9O60706 1549 aa28.26■■■□□ 2.11
CHCHD1-202ENST00000372837 DNAJC5BQ9UF47 199 aa27.51■■□□□ 1.99
CHCHD1-202ENST00000372837 CCDC180Q9P1Z9 1646 aa27.15■■□□□ 1.94
CHCHD1-202ENST00000372837 RB1CC1Q8TDY2 1594 aa26.37■■□□□ 1.81
CHCHD1-202ENST00000372837 PABPN1Q86U42 306 aaKnown RBP eCLIP26.19■■□□□ 1.78
CHCHD1-202ENST00000372837 NACADO15069 1562 aa25.95■■□□□ 1.75
CHCHD1-202ENST00000372837 DNAJC5Q9H3Z4 198 aa25.95■■□□□ 1.74
CHCHD1-202ENST00000372837 UNC13AQ9UPW8 1703 aa25.75■■□□□ 1.71
CHCHD1-202ENST00000372837 BICRAQ9NZM4 1560 aa25.71■■□□□ 1.71
CHCHD1-202ENST00000372837 DCAF8L2P0C7V8 631 aa25.67■■□□□ 1.7
CHCHD1-202ENST00000372837 CECR2Q9BXF3 1484 aa25.55■■□□□ 1.68
CHCHD1-202ENST00000372837 CC2D2AQ9P2K1 1620 aa25.44■■□□□ 1.66
CHCHD1-202ENST00000372837 MYO15BQ96JP2 1530 aa25.27■■□□□ 1.64
CHCHD1-202ENST00000372837 SHROOM4Q9ULL8 1493 aa25.18■■□□□ 1.62
CHCHD1-202ENST00000372837 EIF4G1Q04637 1599 aaKnown RBP25.14■■□□□ 1.61
CHCHD1-202ENST00000372837 CUX2O14529 1486 aa24.73■■□□□ 1.55
CHCHD1-202ENST00000372837 SCRIBQ14160 1630 aa24.72■■□□□ 1.55
CHCHD1-202ENST00000372837 DCAF1Q9Y4B6 1507 aa24.56■■□□□ 1.52
CHCHD1-202ENST00000372837 ZCCHC6Q5VYS8 1495 aaKnown RBP24.52■■□□□ 1.52
CHCHD1-202ENST00000372837 ERCC6Q03468 1493 aa24.42■■□□□ 1.5
CHCHD1-202ENST00000372837 TRIM41Q8WV44 630 aa24.39■■□□□ 1.49
CHCHD1-202ENST00000372837 NCAPD3P42695 1498 aa24.03■■□□□ 1.44
CHCHD1-202ENST00000372837 NESP48681 1621 aa24■■□□□ 1.43
CHCHD1-202ENST00000372837 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
CHCHD1-202ENST00000372837 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
CHCHD1-202ENST00000372837 HMGXB3Q12766 1538 aa23.7■■□□□ 1.38
CHCHD1-202ENST00000372837 SMARCA2P51531 1590 aa23.69■■□□□ 1.38
CHCHD1-202ENST00000372837 LAMC3Q9Y6N6 1575 aa23.58■■□□□ 1.37
CHCHD1-202ENST00000372837 KIF21AQ7Z4S6 1674 aa23.57■■□□□ 1.36
CHCHD1-202ENST00000372837 PDS5BQ9NTI5 1447 aa23.51■■□□□ 1.35
CHCHD1-202ENST00000372837 BAZ1BQ9UIG0 1483 aaKnown RBP23.49■■□□□ 1.35
CHCHD1-202ENST00000372837 SMARCA4P51532 1647 aa23.48■■□□□ 1.35
CHCHD1-202ENST00000372837 OSCARQ8IYS5 282 aa23.47■■□□□ 1.35
CHCHD1-202ENST00000372837 BAZ1AQ9NRL2 1556 aaPredicted RBP23.47■■□□□ 1.35
CHCHD1-202ENST00000372837 MRC2Q9UBG0 1479 aa23.38■■□□□ 1.33
CHCHD1-202ENST00000372837 WDR62O43379 1518 aa23.35■■□□□ 1.33
CHCHD1-202ENST00000372837 PEG3Q9GZU2 1588 aa23.27■■□□□ 1.32
CHCHD1-202ENST00000372837 CADPSQ9ULU8 1353 aa23.25■■□□□ 1.31
CHCHD1-202ENST00000372837 RIMBP3CA6NJZ7 1639 aa23.24■■□□□ 1.31
CHCHD1-202ENST00000372837 RIMBP3BA6NNM3 1639 aa23.24■■□□□ 1.31
CHCHD1-202ENST00000372837 RIMBP3Q9UFD9 1639 aa23.24■■□□□ 1.31
CHCHD1-202ENST00000372837 AEBP2Q6ZN18 517 aaPredicted RBP23.12■■□□□ 1.29
CHCHD1-202ENST00000372837 ARHGEF11O15085 1522 aa23.08■■□□□ 1.29
CHCHD1-202ENST00000372837 CEP164Q9UPV0 1460 aa23.07■■□□□ 1.28
CHCHD1-202ENST00000372837 TRHP20396 242 aaPredicted RBP23.06■■□□□ 1.28
CHCHD1-202ENST00000372837 MROH2BQ7Z745 1585 aa23.01■■□□□ 1.27
CHCHD1-202ENST00000372837 CYB5RLQ6IPT4 315 aa23.01■■□□□ 1.27
CHCHD1-202ENST00000372837 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
CHCHD1-202ENST00000372837 URB2Q14146 1524 aaKnown RBP22.87■■□□□ 1.25
CHCHD1-202ENST00000372837 ARAP1Q96P48 1450 aa22.8■■□□□ 1.24
CHCHD1-202ENST00000372837 ZNF608Q9ULD9 1512 aaPredicted RBP22.77■■□□□ 1.24
CHCHD1-202ENST00000372837 CFTRP13569 1480 aa22.76■■□□□ 1.23
CHCHD1-202ENST00000372837 WIZO95785 1651 aa22.65■■□□□ 1.22
CHCHD1-202ENST00000372837 IFT140Q96RY7 1462 aa22.65■■□□□ 1.22
CHCHD1-202ENST00000372837 RSF1Q96T23 1441 aaPredicted RBP22.59■■□□□ 1.21
CHCHD1-202ENST00000372837 CHD1O14646 1710 aa22.52■■□□□ 1.2
CHCHD1-202ENST00000372837 EIF4G3O43432 1585 aaKnown RBP22.52■■□□□ 1.2
CHCHD1-202ENST00000372837 FBLN2P98095 1184 aa22.47■■□□□ 1.19
CHCHD1-202ENST00000372837 AQRO60306 1485 aaKnown RBP eCLIP22.44■■□□□ 1.189e-12■■■■■ 44.9
CHCHD1-202ENST00000372837 TOPBP1Q92547 1522 aa22.41■■□□□ 1.18
CHCHD1-202ENST00000372837 ILDR1Q86SU0 546 aaPredicted RBP22.35■■□□□ 1.17
CHCHD1-202ENST00000372837 PRDM2Q13029 1718 aa22.31■■□□□ 1.16
CHCHD1-202ENST00000372837 TARBP1Q13395 1621 aaKnown RBP22.29■■□□□ 1.16
CHCHD1-202ENST00000372837 CLASP1Q7Z460 1538 aa22.29■■□□□ 1.16
CHCHD1-202ENST00000372837 TOP2AP11388 1531 aaKnown RBP22.28■■□□□ 1.16
CHCHD1-202ENST00000372837 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
CHCHD1-202ENST00000372837 DNMBPQ6XZF7 1577 aa22.21■■□□□ 1.15
CHCHD1-202ENST00000372837 CHIC1Q5VXU3 224 aa22.2■■□□□ 1.14
CHCHD1-202ENST00000372837 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
CHCHD1-202ENST00000372837 SYNJ1O43426 1573 aa22.14■■□□□ 1.13
CHCHD1-202ENST00000372837 POLA1P09884 1462 aaPredicted RBP22.14■■□□□ 1.13
CHCHD1-202ENST00000372837 SNAPC4Q5SXM2 1469 aa22.14■■□□□ 1.13
CHCHD1-202ENST00000372837 TDRD9Q8NDG6 1382 aaKnown RBP22.13■■□□□ 1.13
CHCHD1-202ENST00000372837 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
CHCHD1-202ENST00000372837 RAD54L2Q9Y4B4 1467 aa22.1■■□□□ 1.13
CHCHD1-202ENST00000372837 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
CHCHD1-202ENST00000372837 SOGA1O94964 1423 aa22.01■■□□□ 1.11
CHCHD1-202ENST00000372837 MAGI1Q96QZ7 1491 aaPredicted RBP22.01■■□□□ 1.11
CHCHD1-202ENST00000372837 KDM4FA0A1W2PPD8 638 aa21.99■■□□□ 1.11
CHCHD1-202ENST00000372837 SYNJ2O15056 1496 aa21.97■■□□□ 1.11
CHCHD1-202ENST00000372837 WDR97A6NE52 1622 aa21.92■■□□□ 1.1
CHCHD1-202ENST00000372837 GRIN2BQ13224 1484 aa21.92■■□□□ 1.1
CHCHD1-202ENST00000372837 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
CHCHD1-202ENST00000372837 KIF13AQ9H1H9 1805 aa21.88■■□□□ 1.09
CHCHD1-202ENST00000372837 FGD5Q6ZNL6 1462 aa21.84■■□□□ 1.09
CHCHD1-202ENST00000372837 CEP170Q5SW79 1584 aa21.74■■□□□ 1.07
CHCHD1-202ENST00000372837 FAM69CQ0P6D2 419 aa21.72■■□□□ 1.07
CHCHD1-202ENST00000372837 PBRM1Q86U86 1689 aa21.7■■□□□ 1.06
CHCHD1-202ENST00000372837 ABCC10Q5T3U5 1492 aa21.68■■□□□ 1.06
CHCHD1-202ENST00000372837 CUX1P39880 1505 aa21.67■■□□□ 1.06
CHCHD1-202ENST00000372837 GRIN2AQ12879 1464 aa21.65■■□□□ 1.06
CHCHD1-202ENST00000372837 NUP160Q12769 1436 aa21.63■■□□□ 1.05
CHCHD1-202ENST00000372837 KDM6BO15054 1643 aa21.62■■□□□ 1.05
CHCHD1-202ENST00000372837 SHROOM2Q13796 1616 aa21.61■■□□□ 1.05
CHCHD1-202ENST00000372837 DIP2BQ9P265 1576 aa21.57■■□□□ 1.04
CHCHD1-202ENST00000372837 ABCA5Q8WWZ7 1642 aa21.56■■□□□ 1.04
CHCHD1-202ENST00000372837 MAPKBP1O60336 1514 aa21.53■■□□□ 1.04
CHCHD1-202ENST00000372837 HECW2Q9P2P5 1572 aa21.53■■□□□ 1.04
CHCHD1-202ENST00000372837 ABCA10Q8WWZ4 1543 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms