RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 NISCHQ9Y2I1 1504 aa26.65■■□□□ 1.86
USF1-201ENST00000368019 CCDC180Q9P1Z9 1646 aa23.96■■□□□ 1.43
USF1-201ENST00000368019 ABCC9O60706 1549 aa23.96■■□□□ 1.43
USF1-201ENST00000368019 RB1CC1Q8TDY2 1594 aa22.8■■□□□ 1.24
USF1-201ENST00000368019 NACADO15069 1562 aa22.65■■□□□ 1.22
USF1-201ENST00000368019 DNAJC5BQ9UF47 199 aa22.59■■□□□ 1.21
USF1-201ENST00000368019 DCAF8L2P0C7V8 631 aa22.41■■□□□ 1.18
USF1-201ENST00000368019 UNC13AQ9UPW8 1703 aa22.37■■□□□ 1.17
USF1-201ENST00000368019 MYO15BQ96JP2 1530 aa22.36■■□□□ 1.17
USF1-201ENST00000368019 PABPN1Q86U42 306 aaKnown RBP eCLIP22.28■■□□□ 1.165e-6■■■■□ 22.2
USF1-201ENST00000368019 BICRAQ9NZM4 1560 aa22.2■■□□□ 1.14
USF1-201ENST00000368019 ZCCHC6Q5VYS8 1495 aaKnown RBP22.07■■□□□ 1.12
USF1-201ENST00000368019 DCAF1Q9Y4B6 1507 aa22.04■■□□□ 1.12
USF1-201ENST00000368019 SHROOM4Q9ULL8 1493 aa21.86■■□□□ 1.09
USF1-201ENST00000368019 SCRIBQ14160 1630 aa21.77■■□□□ 1.08
USF1-201ENST00000368019 CC2D2AQ9P2K1 1620 aa21.68■■□□□ 1.06
USF1-201ENST00000368019 EIF4G1Q04637 1599 aaKnown RBP21.61■■□□□ 1.05
USF1-201ENST00000368019 CECR2Q9BXF3 1484 aa21.59■■□□□ 1.05
USF1-201ENST00000368019 NCAPD3P42695 1498 aa20.92■□□□□ 0.94
USF1-201ENST00000368019 ATAD2BQ9ULI0 1458 aa20.84■□□□□ 0.93
USF1-201ENST00000368019 SMARCA4P51532 1647 aa20.8■□□□□ 0.92
USF1-201ENST00000368019 DNAJC5Q9H3Z4 198 aa20.78■□□□□ 0.92
USF1-201ENST00000368019 SMARCA2P51531 1590 aa20.76■□□□□ 0.91
USF1-201ENST00000368019 HMGXB3Q12766 1538 aa20.75■□□□□ 0.91
USF1-201ENST00000368019 CUX2O14529 1486 aa20.7■□□□□ 0.9
USF1-201ENST00000368019 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
USF1-201ENST00000368019 ERCC6Q03468 1493 aa20.65■□□□□ 0.9
USF1-201ENST00000368019 PEG3Q9GZU2 1588 aa20.63■□□□□ 0.89
USF1-201ENST00000368019 BAZ1BQ9UIG0 1483 aaKnown RBP20.59■□□□□ 0.89
USF1-201ENST00000368019 NESP48681 1621 aa20.59■□□□□ 0.89
USF1-201ENST00000368019 MROH2BQ7Z745 1585 aa20.53■□□□□ 0.88
USF1-201ENST00000368019 LAMC3Q9Y6N6 1575 aa20.45■□□□□ 0.86
USF1-201ENST00000368019 THOC2Q8NI27 1593 aaKnown RBP20.42■□□□□ 0.86
USF1-201ENST00000368019 KIF21AQ7Z4S6 1674 aa20.35■□□□□ 0.85
USF1-201ENST00000368019 PDS5BQ9NTI5 1447 aa20.3■□□□□ 0.84
USF1-201ENST00000368019 WIZO95785 1651 aa20.28■□□□□ 0.84
USF1-201ENST00000368019 CADPSQ9ULU8 1353 aa20.26■□□□□ 0.83
USF1-201ENST00000368019 MRC2Q9UBG0 1479 aa20.13■□□□□ 0.81
USF1-201ENST00000368019 WDR62O43379 1518 aa20.12■□□□□ 0.81
USF1-201ENST00000368019 RSF1Q96T23 1441 aaPredicted RBP20.08■□□□□ 0.8
USF1-201ENST00000368019 CFTRP13569 1480 aa20.03■□□□□ 0.8
USF1-201ENST00000368019 CEP164Q9UPV0 1460 aa20.03■□□□□ 0.8
USF1-201ENST00000368019 FANCD2Q9BXW9 1451 aa20.02■□□□□ 0.8
USF1-201ENST00000368019 TOP2AP11388 1531 aaKnown RBP20.01■□□□□ 0.79
USF1-201ENST00000368019 URB2Q14146 1524 aaKnown RBP19.88■□□□□ 0.77
USF1-201ENST00000368019 PRDM2Q13029 1718 aa19.86■□□□□ 0.77
USF1-201ENST00000368019 CCDC88BA6NC98 1476 aa19.79■□□□□ 0.76
USF1-201ENST00000368019 TRIM41Q8WV44 630 aa19.75■□□□□ 0.75
USF1-201ENST00000368019 OSCARQ8IYS5 282 aa19.73■□□□□ 0.75
USF1-201ENST00000368019 IFT140Q96RY7 1462 aa19.65■□□□□ 0.74
USF1-201ENST00000368019 TOPBP1Q92547 1522 aa19.65■□□□□ 0.74
USF1-201ENST00000368019 ZNF608Q9ULD9 1512 aaPredicted RBP19.63■□□□□ 0.73
USF1-201ENST00000368019 ABCC8Q09428 1581 aa19.6■□□□□ 0.73
USF1-201ENST00000368019 DNMBPQ6XZF7 1577 aa19.57■□□□□ 0.72
USF1-201ENST00000368019 EIF4G3O43432 1585 aaKnown RBP19.52■□□□□ 0.71
USF1-201ENST00000368019 TARBP1Q13395 1621 aaKnown RBP19.51■□□□□ 0.71
USF1-201ENST00000368019 RIMBP3CA6NJZ7 1639 aa19.51■□□□□ 0.71
USF1-201ENST00000368019 RIMBP3BA6NNM3 1639 aa19.51■□□□□ 0.71
USF1-201ENST00000368019 RIMBP3Q9UFD9 1639 aa19.51■□□□□ 0.71
USF1-201ENST00000368019 AQRO60306 1485 aaKnown RBP eCLIP19.43■□□□□ 0.73e-7■■■■■ 35.2
USF1-201ENST00000368019 POLA1P09884 1462 aaPredicted RBP19.43■□□□□ 0.7
USF1-201ENST00000368019 ARHGEF11O15085 1522 aa19.42■□□□□ 0.7
USF1-201ENST00000368019 CHD1O14646 1710 aa19.41■□□□□ 0.7
USF1-201ENST00000368019 RAD54L2Q9Y4B4 1467 aa19.35■□□□□ 0.69
USF1-201ENST00000368019 SOGA1O94964 1423 aa19.33■□□□□ 0.68
USF1-201ENST00000368019 TDRD9Q8NDG6 1382 aaKnown RBP19.3■□□□□ 0.68
USF1-201ENST00000368019 WDR97A6NE52 1622 aa19.29■□□□□ 0.68
USF1-201ENST00000368019 FGD5Q6ZNL6 1462 aa19.29■□□□□ 0.68
USF1-201ENST00000368019 CUX1P39880 1505 aa19.29■□□□□ 0.68
USF1-201ENST00000368019 FBLN2P98095 1184 aa19.25■□□□□ 0.67
USF1-201ENST00000368019 CYB5RLQ6IPT4 315 aa19.25■□□□□ 0.67
USF1-201ENST00000368019 ARAP1Q96P48 1450 aa19.23■□□□□ 0.67
USF1-201ENST00000368019 SNAPC4Q5SXM2 1469 aa19.22■□□□□ 0.67
USF1-201ENST00000368019 MAGI1Q96QZ7 1491 aaPredicted RBP19.19■□□□□ 0.66
USF1-201ENST00000368019 CLASP1Q7Z460 1538 aa19.19■□□□□ 0.66
USF1-201ENST00000368019 GRIN2BQ13224 1484 aa19.17■□□□□ 0.66
USF1-201ENST00000368019 CHMP7Q8WUX9 453 aaPredicted RBP19.13■□□□□ 0.65
USF1-201ENST00000368019 SYNJ1O43426 1573 aa19.13■□□□□ 0.65
USF1-201ENST00000368019 PBRM1Q86U86 1689 aa19.12■□□□□ 0.65
USF1-201ENST00000368019 SYNJ2O15056 1496 aa19.12■□□□□ 0.65
USF1-201ENST00000368019 GAPVD1Q14C86 1478 aa19.1■□□□□ 0.65
USF1-201ENST00000368019 ABCA10Q8WWZ4 1543 aa19.1■□□□□ 0.65
USF1-201ENST00000368019 SUPT5HO00267 1087 aaKnown RBP19.09■□□□□ 0.65
USF1-201ENST00000368019 ABCA5Q8WWZ7 1642 aa19.08■□□□□ 0.65
USF1-201ENST00000368019 TRHP20396 242 aaPredicted RBP19.01■□□□□ 0.63
USF1-201ENST00000368019 BIVM-ERCC5R4GMW8 1640 aa18.98■□□□□ 0.63
USF1-201ENST00000368019 WRNQ14191 1432 aaPredicted RBP eCLIP18.97■□□□□ 0.63
USF1-201ENST00000368019 TOP2BQ02880 1626 aa18.96■□□□□ 0.63
USF1-201ENST00000368019 CHIC1Q5VXU3 224 aa18.95■□□□□ 0.62
USF1-201ENST00000368019 GRIN2AQ12879 1464 aa18.93■□□□□ 0.62
USF1-201ENST00000368019 ADAMTS12P58397 1594 aa18.93■□□□□ 0.62
USF1-201ENST00000368019 NUP160Q12769 1436 aa18.9■□□□□ 0.62
USF1-201ENST00000368019 HRCP23327 699 aa18.88■□□□□ 0.61
USF1-201ENST00000368019 CEP170Q5SW79 1584 aa18.88■□□□□ 0.61
USF1-201ENST00000368019 ERCC6L2Q5T890 1561 aa18.88■□□□□ 0.61
USF1-201ENST00000368019 FHAD1B1AJZ9 1412 aa18.86■□□□□ 0.61
USF1-201ENST00000368019 ERICH3Q5RHP9 1530 aa18.85■□□□□ 0.61
USF1-201ENST00000368019 SHROOM2Q13796 1616 aa18.84■□□□□ 0.61
USF1-201ENST00000368019 PRG4Q92954 1404 aaPredicted RBP18.68■□□□□ 0.58
USF1-201ENST00000368019 JPH4Q96JJ6 628 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms