RNA–Protein interactions for RNA: ENST00000366888.6

PACRG-202, Transcript of parkin coregulated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PACRG, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PACRG-202ENST00000366888 NISCHQ9Y2I1 1504 aa20.36■□□□□ 0.85
PACRG-202ENST00000366888 ABCC9O60706 1549 aa18.54■□□□□ 0.56
PACRG-202ENST00000366888 CCDC180Q9P1Z9 1646 aa18.39■□□□□ 0.53
PACRG-202ENST00000366888 RB1CC1Q8TDY2 1594 aa17.54■□□□□ 0.4
PACRG-202ENST00000366888 DNAJC5BQ9UF47 199 aa17.51■□□□□ 0.39
PACRG-202ENST00000366888 NACADO15069 1562 aa17.36■□□□□ 0.37
PACRG-202ENST00000366888 UNC13AQ9UPW8 1703 aa17.29■□□□□ 0.36
PACRG-202ENST00000366888 DCAF8L2P0C7V8 631 aa17.27■□□□□ 0.35
PACRG-202ENST00000366888 PABPN1Q86U42 306 aaKnown RBP eCLIP17.21■□□□□ 0.35
PACRG-202ENST00000366888 BICRAQ9NZM4 1560 aa17.08■□□□□ 0.32
PACRG-202ENST00000366888 MYO15BQ96JP2 1530 aa17.02■□□□□ 0.31
PACRG-202ENST00000366888 ZCCHC6Q5VYS8 1495 aaKnown RBP16.85■□□□□ 0.29
PACRG-202ENST00000366888 SCRIBQ14160 1630 aa16.78■□□□□ 0.28
PACRG-202ENST00000366888 DCAF1Q9Y4B6 1507 aa16.76■□□□□ 0.27
PACRG-202ENST00000366888 CC2D2AQ9P2K1 1620 aa16.75■□□□□ 0.27
PACRG-202ENST00000366888 SHROOM4Q9ULL8 1493 aa16.71■□□□□ 0.27
PACRG-202ENST00000366888 CECR2Q9BXF3 1484 aa16.68■□□□□ 0.26
PACRG-202ENST00000366888 EIF4G1Q04637 1599 aaKnown RBP16.66■□□□□ 0.26
PACRG-202ENST00000366888 DNAJC5Q9H3Z4 198 aa16.13■□□□□ 0.17
PACRG-202ENST00000366888 NCAPD3P42695 1498 aa16■□□□□ 0.15
PACRG-202ENST00000366888 ERCC6Q03468 1493 aa15.99■□□□□ 0.15
PACRG-202ENST00000366888 CUX2O14529 1486 aa15.97■□□□□ 0.15
PACRG-202ENST00000366888 SMARCA4P51532 1647 aa15.96■□□□□ 0.15
PACRG-202ENST00000366888 ATAD2BQ9ULI0 1458 aa15.96■□□□□ 0.15
PACRG-202ENST00000366888 SMARCA2P51531 1590 aa15.91■□□□□ 0.14
PACRG-202ENST00000366888 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
PACRG-202ENST00000366888 NESP48681 1621 aa15.9■□□□□ 0.14
PACRG-202ENST00000366888 BAZ1AQ9NRL2 1556 aaPredicted RBP15.82■□□□□ 0.12
PACRG-202ENST00000366888 BAZ1BQ9UIG0 1483 aaKnown RBP15.81■□□□□ 0.12
PACRG-202ENST00000366888 THOC2Q8NI27 1593 aaKnown RBP15.77■□□□□ 0.12
PACRG-202ENST00000366888 PEG3Q9GZU2 1588 aa15.76■□□□□ 0.11
PACRG-202ENST00000366888 KIF21AQ7Z4S6 1674 aa15.75■□□□□ 0.11
PACRG-202ENST00000366888 MROH2BQ7Z745 1585 aa15.73■□□□□ 0.11
PACRG-202ENST00000366888 LAMC3Q9Y6N6 1575 aa15.71■□□□□ 0.11
PACRG-202ENST00000366888 AEBP2Q6ZN18 517 aaPredicted RBP15.7■□□□□ 0.1
PACRG-202ENST00000366888 WIZO95785 1651 aa15.58■□□□□ 0.09
PACRG-202ENST00000366888 PDS5BQ9NTI5 1447 aa15.57■□□□□ 0.08
PACRG-202ENST00000366888 CADPSQ9ULU8 1353 aa15.5■□□□□ 0.07
PACRG-202ENST00000366888 MRC2Q9UBG0 1479 aa15.49■□□□□ 0.07
PACRG-202ENST00000366888 WDR62O43379 1518 aa15.47■□□□□ 0.07
PACRG-202ENST00000366888 TRIM41Q8WV44 630 aa15.43■□□□□ 0.06
PACRG-202ENST00000366888 CEP164Q9UPV0 1460 aa15.41■□□□□ 0.06
PACRG-202ENST00000366888 FANCD2Q9BXW9 1451 aa15.37■□□□□ 0.05
PACRG-202ENST00000366888 CFTRP13569 1480 aa15.31■□□□□ 0.04
PACRG-202ENST00000366888 TOP2AP11388 1531 aaKnown RBP15.3■□□□□ 0.04
PACRG-202ENST00000366888 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
PACRG-202ENST00000366888 RSF1Q96T23 1441 aaPredicted RBP15.29■□□□□ 0.04
PACRG-202ENST00000366888 URB2Q14146 1524 aaKnown RBP15.28■□□□□ 0.04
PACRG-202ENST00000366888 OSCARQ8IYS5 282 aa15.19■□□□□ 0.02
PACRG-202ENST00000366888 RIMBP3CA6NJZ7 1639 aa15.13■□□□□ 0.01
PACRG-202ENST00000366888 RIMBP3BA6NNM3 1639 aa15.13■□□□□ 0.01
PACRG-202ENST00000366888 RIMBP3Q9UFD9 1639 aa15.13■□□□□ 0.01
PACRG-202ENST00000366888 ZNF608Q9ULD9 1512 aaPredicted RBP15.13■□□□□ 0.01
PACRG-202ENST00000366888 CCDC88BA6NC98 1476 aa15.13■□□□□ 0.01
PACRG-202ENST00000366888 TOPBP1Q92547 1522 aa15.08■□□□□ 0
PACRG-202ENST00000366888 IFT140Q96RY7 1462 aa15.08■□□□□ 0
PACRG-202ENST00000366888 EIF4G3O43432 1585 aaKnown RBP15.07■□□□□ 0
PACRG-202ENST00000366888 CHD1O14646 1710 aa15.04■□□□□ -0
PACRG-202ENST00000366888 ARHGEF11O15085 1522 aa15.02■□□□□ -0
PACRG-202ENST00000366888 DNMBPQ6XZF7 1577 aa15.01□□□□□ -0.01
PACRG-202ENST00000366888 TARBP1Q13395 1621 aaKnown RBP14.99□□□□□ -0.01
PACRG-202ENST00000366888 ABCC8Q09428 1581 aa14.97□□□□□ -0.01
PACRG-202ENST00000366888 AQRO60306 1485 aaKnown RBP eCLIP14.95□□□□□ -0.02
PACRG-202ENST00000366888 POLA1P09884 1462 aaPredicted RBP14.91□□□□□ -0.02
PACRG-202ENST00000366888 CYB5RLQ6IPT4 315 aa14.89□□□□□ -0.03
PACRG-202ENST00000366888 RAD54L2Q9Y4B4 1467 aa14.88□□□□□ -0.03
PACRG-202ENST00000366888 FBLN2P98095 1184 aa14.87□□□□□ -0.03
PACRG-202ENST00000366888 ARAP1Q96P48 1450 aa14.87□□□□□ -0.03
PACRG-202ENST00000366888 TDRD9Q8NDG6 1382 aaKnown RBP14.82□□□□□ -0.04
PACRG-202ENST00000366888 SOGA1O94964 1423 aa14.82□□□□□ -0.04
PACRG-202ENST00000366888 FGD5Q6ZNL6 1462 aa14.81□□□□□ -0.04
PACRG-202ENST00000366888 SNAPC4Q5SXM2 1469 aa14.8□□□□□ -0.04
PACRG-202ENST00000366888 TRHP20396 242 aaPredicted RBP14.79□□□□□ -0.04
PACRG-202ENST00000366888 CHIC1Q5VXU3 224 aa14.78□□□□□ -0.04
PACRG-202ENST00000366888 CUX1P39880 1505 aa14.78□□□□□ -0.04
PACRG-202ENST00000366888 CLASP1Q7Z460 1538 aa14.78□□□□□ -0.04
PACRG-202ENST00000366888 WDR97A6NE52 1622 aa14.77□□□□□ -0.05
PACRG-202ENST00000366888 PBRM1Q86U86 1689 aa14.76□□□□□ -0.05
PACRG-202ENST00000366888 SYNJ1O43426 1573 aa14.74□□□□□ -0.05
PACRG-202ENST00000366888 MAGI1Q96QZ7 1491 aaPredicted RBP14.72□□□□□ -0.05
PACRG-202ENST00000366888 CHMP7Q8WUX9 453 aaPredicted RBP14.71□□□□□ -0.06
PACRG-202ENST00000366888 GRIN2BQ13224 1484 aa14.7□□□□□ -0.06
PACRG-202ENST00000366888 SYNJ2O15056 1496 aa14.68□□□□□ -0.06
PACRG-202ENST00000366888 ABCA5Q8WWZ7 1642 aa14.65□□□□□ -0.06
PACRG-202ENST00000366888 GAPVD1Q14C86 1478 aa14.64□□□□□ -0.07
PACRG-202ENST00000366888 ABCA10Q8WWZ4 1543 aa14.59□□□□□ -0.07
PACRG-202ENST00000366888 ERCC6L2Q5T890 1561 aa14.59□□□□□ -0.07
PACRG-202ENST00000366888 ADAMTS12P58397 1594 aa14.55□□□□□ -0.08
PACRG-202ENST00000366888 CEP170Q5SW79 1584 aa14.54□□□□□ -0.08
PACRG-202ENST00000366888 GRIN2AQ12879 1464 aa14.54□□□□□ -0.08
PACRG-202ENST00000366888 SUPT5HO00267 1087 aaKnown RBP14.53□□□□□ -0.08
PACRG-202ENST00000366888 BIVM-ERCC5R4GMW8 1640 aa14.52□□□□□ -0.08
PACRG-202ENST00000366888 TOP2BQ02880 1626 aa14.49□□□□□ -0.09
PACRG-202ENST00000366888 WRNQ14191 1432 aaPredicted RBP eCLIP14.49□□□□□ -0.09
PACRG-202ENST00000366888 SHROOM2Q13796 1616 aa14.48□□□□□ -0.09
PACRG-202ENST00000366888 NUP160Q12769 1436 aa14.47□□□□□ -0.09
PACRG-202ENST00000366888 KIF13AQ9H1H9 1805 aa14.44□□□□□ -0.1
PACRG-202ENST00000366888 FHAD1B1AJZ9 1412 aa14.43□□□□□ -0.1
PACRG-202ENST00000366888 ERICH3Q5RHP9 1530 aa14.41□□□□□ -0.1
PACRG-202ENST00000366888 RUSC2Q8N2Y8 1516 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms