RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 AEBP2Q6ZN18 517 aaPredicted RBP23.44■■□□□ 1.34
HMGB1P39-201ENST00000366304 CHIC1Q5VXU3 224 aa22.59■■□□□ 1.21
HMGB1P39-201ENST00000366304 NISCHQ9Y2I1 1504 aa22.16■■□□□ 1.14
HMGB1P39-201ENST00000366304 ABCC9O60706 1549 aa20.63■□□□□ 0.89
HMGB1P39-201ENST00000366304 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
HMGB1P39-201ENST00000366304 DNAJC5BQ9UF47 199 aa19.93■□□□□ 0.78
HMGB1P39-201ENST00000366304 SENP3Q9H4L4 574 aaPredicted RBP19.9■□□□□ 0.78
HMGB1P39-201ENST00000366304 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
HMGB1P39-201ENST00000366304 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
HMGB1P39-201ENST00000366304 PABPN1Q86U42 306 aaKnown RBP eCLIP19.17■□□□□ 0.66
HMGB1P39-201ENST00000366304 NACADO15069 1562 aa19.06■□□□□ 0.64
HMGB1P39-201ENST00000366304 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
HMGB1P39-201ENST00000366304 DCAF8L2P0C7V8 631 aa18.9■□□□□ 0.62
HMGB1P39-201ENST00000366304 BICRAQ9NZM4 1560 aa18.89■□□□□ 0.62
HMGB1P39-201ENST00000366304 MYO15BQ96JP2 1530 aa18.63■□□□□ 0.57
HMGB1P39-201ENST00000366304 CECR2Q9BXF3 1484 aa18.6■□□□□ 0.57
HMGB1P39-201ENST00000366304 CC2D2AQ9P2K1 1620 aa18.57■□□□□ 0.56
HMGB1P39-201ENST00000366304 FOXD1Q16676 465 aa18.53■□□□□ 0.56
HMGB1P39-201ENST00000366304 DNAJC5Q9H3Z4 198 aa18.53■□□□□ 0.56
HMGB1P39-201ENST00000366304 SHROOM4Q9ULL8 1493 aa18.42■□□□□ 0.54
HMGB1P39-201ENST00000366304 EIF4G1Q04637 1599 aaKnown RBP18.4■□□□□ 0.54
HMGB1P39-201ENST00000366304 SCRIBQ14160 1630 aa18.29■□□□□ 0.52
HMGB1P39-201ENST00000366304 ZCCHC6Q5VYS8 1495 aaKnown RBP18.26■□□□□ 0.51
HMGB1P39-201ENST00000366304 PLPPR3Q6T4P5 718 aa18.22■□□□□ 0.51
HMGB1P39-201ENST00000366304 DCAF1Q9Y4B6 1507 aa18.22■□□□□ 0.51
HMGB1P39-201ENST00000366304 CUX2O14529 1486 aa17.89■□□□□ 0.45
HMGB1P39-201ENST00000366304 ERCC6Q03468 1493 aa17.75■□□□□ 0.43
HMGB1P39-201ENST00000366304 NCAPD3P42695 1498 aa17.66■□□□□ 0.42
HMGB1P39-201ENST00000366304 PPP6R1Q9UPN7 881 aa17.63■□□□□ 0.41
HMGB1P39-201ENST00000366304 NESP48681 1621 aa17.62■□□□□ 0.41
HMGB1P39-201ENST00000366304 ADRA2BP18089 450 aa17.61■□□□□ 0.41
HMGB1P39-201ENST00000366304 ATAD2BQ9ULI0 1458 aa17.56■□□□□ 0.4
HMGB1P39-201ENST00000366304 TRIM41Q8WV44 630 aa17.5■□□□□ 0.39
HMGB1P39-201ENST00000366304 THOC2Q8NI27 1593 aaKnown RBP17.48■□□□□ 0.39
HMGB1P39-201ENST00000366304 HMGXB3Q12766 1538 aa17.44■□□□□ 0.38
HMGB1P39-201ENST00000366304 PIAS4Q8N2W9 510 aaPredicted RBP17.42■□□□□ 0.38
HMGB1P39-201ENST00000366304 SMARCA2P51531 1590 aa17.39■□□□□ 0.37
HMGB1P39-201ENST00000366304 SMARCA4P51532 1647 aa17.38■□□□□ 0.37
HMGB1P39-201ENST00000366304 BAZ1BQ9UIG0 1483 aaKnown RBP17.3■□□□□ 0.36
HMGB1P39-201ENST00000366304 KIF21AQ7Z4S6 1674 aa17.28■□□□□ 0.36
HMGB1P39-201ENST00000366304 LAMC3Q9Y6N6 1575 aa17.27■□□□□ 0.35
HMGB1P39-201ENST00000366304 PEG3Q9GZU2 1588 aa17.2■□□□□ 0.34
HMGB1P39-201ENST00000366304 PDS5BQ9NTI5 1447 aa17.19■□□□□ 0.34
HMGB1P39-201ENST00000366304 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
HMGB1P39-201ENST00000366304 MSH5O43196 834 aa17.16■□□□□ 0.34
HMGB1P39-201ENST00000366304 MROH2BQ7Z745 1585 aa17.13■□□□□ 0.33
HMGB1P39-201ENST00000366304 MRC2Q9UBG0 1479 aa17.12■□□□□ 0.33
HMGB1P39-201ENST00000366304 WDR62O43379 1518 aa17.11■□□□□ 0.33
HMGB1P39-201ENST00000366304 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
HMGB1P39-201ENST00000366304 OSCARQ8IYS5 282 aa17■□□□□ 0.31
HMGB1P39-201ENST00000366304 CEP164Q9UPV0 1460 aa16.93■□□□□ 0.3
HMGB1P39-201ENST00000366304 FANCD2Q9BXW9 1451 aa16.9■□□□□ 0.3
HMGB1P39-201ENST00000366304 RIMBP3CA6NJZ7 1639 aa16.88■□□□□ 0.29
HMGB1P39-201ENST00000366304 RIMBP3BA6NNM3 1639 aa16.88■□□□□ 0.29
HMGB1P39-201ENST00000366304 RIMBP3Q9UFD9 1639 aa16.88■□□□□ 0.29
HMGB1P39-201ENST00000366304 WIZO95785 1651 aa16.86■□□□□ 0.29
HMGB1P39-201ENST00000366304 URB2Q14146 1524 aaKnown RBP16.85■□□□□ 0.29
HMGB1P39-201ENST00000366304 CFTRP13569 1480 aa16.8■□□□□ 0.28
HMGB1P39-201ENST00000366304 ARHGEF11O15085 1522 aa16.78■□□□□ 0.28
HMGB1P39-201ENST00000366304 ZNF608Q9ULD9 1512 aaPredicted RBP16.75■□□□□ 0.27
HMGB1P39-201ENST00000366304 CYB5RLQ6IPT4 315 aa16.69■□□□□ 0.26
HMGB1P39-201ENST00000366304 ARAP1Q96P48 1450 aa16.61■□□□□ 0.25
HMGB1P39-201ENST00000366304 TRHP20396 242 aaPredicted RBP16.61■□□□□ 0.25
HMGB1P39-201ENST00000366304 IFT140Q96RY7 1462 aa16.61■□□□□ 0.25
HMGB1P39-201ENST00000366304 RSF1Q96T23 1441 aaPredicted RBP16.58■□□□□ 0.24
HMGB1P39-201ENST00000366304 TOP2AP11388 1531 aaKnown RBP16.57■□□□□ 0.24
HMGB1P39-201ENST00000366304 EIF4G3O43432 1585 aaKnown RBP16.55■□□□□ 0.24
HMGB1P39-201ENST00000366304 TOPBP1Q92547 1522 aa16.54■□□□□ 0.24
HMGB1P39-201ENST00000366304 AQRO60306 1485 aaKnown RBP eCLIP16.51■□□□□ 0.23
HMGB1P39-201ENST00000366304 CHD1O14646 1710 aa16.49■□□□□ 0.23
HMGB1P39-201ENST00000366304 PRDM2Q13029 1718 aa16.46■□□□□ 0.23
HMGB1P39-201ENST00000366304 CCDC88BA6NC98 1476 aa16.45■□□□□ 0.22
HMGB1P39-201ENST00000366304 TARBP1Q13395 1621 aaKnown RBP16.44■□□□□ 0.22
HMGB1P39-201ENST00000366304 FBLN2P98095 1184 aa16.43■□□□□ 0.22
HMGB1P39-201ENST00000366304 DNMBPQ6XZF7 1577 aa16.39■□□□□ 0.21
HMGB1P39-201ENST00000366304 POLA1P09884 1462 aaPredicted RBP16.35■□□□□ 0.21
HMGB1P39-201ENST00000366304 CLASP1Q7Z460 1538 aa16.35■□□□□ 0.21
HMGB1P39-201ENST00000366304 ABCC8Q09428 1581 aa16.34■□□□□ 0.21
HMGB1P39-201ENST00000366304 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
HMGB1P39-201ENST00000366304 TDRD9Q8NDG6 1382 aaKnown RBP16.32■□□□□ 0.2
HMGB1P39-201ENST00000366304 SNAPC4Q5SXM2 1469 aa16.29■□□□□ 0.2
HMGB1P39-201ENST00000366304 SOGA1O94964 1423 aa16.24■□□□□ 0.19
HMGB1P39-201ENST00000366304 CHMP7Q8WUX9 453 aaPredicted RBP16.2■□□□□ 0.18
HMGB1P39-201ENST00000366304 SYNJ1O43426 1573 aa16.19■□□□□ 0.18
HMGB1P39-201ENST00000366304 GAPVD1Q14C86 1478 aa16.18■□□□□ 0.18
HMGB1P39-201ENST00000366304 FGD5Q6ZNL6 1462 aa16.16■□□□□ 0.18
HMGB1P39-201ENST00000366304 MAGI1Q96QZ7 1491 aaPredicted RBP16.16■□□□□ 0.18
HMGB1P39-201ENST00000366304 POTEDQ86YR6 584 aa16.15■□□□□ 0.18
HMGB1P39-201ENST00000366304 SYNJ2O15056 1496 aa16.14■□□□□ 0.17
HMGB1P39-201ENST00000366304 ERCC6L2Q5T890 1561 aa16.13■□□□□ 0.17
HMGB1P39-201ENST00000366304 GRIN2BQ13224 1484 aa16.13■□□□□ 0.17
HMGB1P39-201ENST00000366304 CUX1P39880 1505 aa16.11■□□□□ 0.17
HMGB1P39-201ENST00000366304 WDR97A6NE52 1622 aa16.1■□□□□ 0.17
HMGB1P39-201ENST00000366304 MAPK8IP2Q13387 824 aaPredicted RBP16.07■□□□□ 0.16
HMGB1P39-201ENST00000366304 SCAF1Q9H7N4 1312 aaKnown RBP16.05■□□□□ 0.16
HMGB1P39-201ENST00000366304 PPP4R3CPQ6ZMV5 832 aa16.04■□□□□ 0.16
HMGB1P39-201ENST00000366304 PBRM1Q86U86 1689 aa16■□□□□ 0.15
HMGB1P39-201ENST00000366304 CEP170Q5SW79 1584 aa15.97■□□□□ 0.15
HMGB1P39-201ENST00000366304 ABCA5Q8WWZ7 1642 aa15.97■□□□□ 0.15
HMGB1P39-201ENST00000366304 GRIN2AQ12879 1464 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms