RNA–Protein interactions for RNA: ENST00000361115.4

CCL28-201, Transcript of C-C motif chemokine ligand 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCL28, Length 3,126 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-201ENST00000361115 NISCHQ9Y2I1 1504 aa18.5■□□□□ 0.55
CCL28-201ENST00000361115 CCDC180Q9P1Z9 1646 aa17.17■□□□□ 0.34
CCL28-201ENST00000361115 ABCC9O60706 1549 aa16.57■□□□□ 0.24
CCL28-201ENST00000361115 RB1CC1Q8TDY2 1594 aa16.25■□□□□ 0.19
CCL28-201ENST00000361115 NACADO15069 1562 aa16.15■□□□□ 0.18
CCL28-201ENST00000361115 MYO15BQ96JP2 1530 aa16.1■□□□□ 0.17
CCL28-201ENST00000361115 SHROOM4Q9ULL8 1493 aa16.02■□□□□ 0.15
CCL28-201ENST00000361115 DCAF1Q9Y4B6 1507 aa15.7■□□□□ 0.1
CCL28-201ENST00000361115 UNC13AQ9UPW8 1703 aa15.69■□□□□ 0.1
CCL28-201ENST00000361115 BICRAQ9NZM4 1560 aa15.55■□□□□ 0.08
CCL28-201ENST00000361115 DNAJC5BQ9UF47 199 aa15.5■□□□□ 0.07
CCL28-201ENST00000361115 ZCCHC6Q5VYS8 1495 aaKnown RBP15.35■□□□□ 0.05
CCL28-201ENST00000361115 CC2D2AQ9P2K1 1620 aa15.25■□□□□ 0.03
CCL28-201ENST00000361115 EIF4G1Q04637 1599 aaKnown RBP15.22■□□□□ 0.03
CCL28-201ENST00000361115 CECR2Q9BXF3 1484 aa15.18■□□□□ 0.02
CCL28-201ENST00000361115 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
CCL28-201ENST00000361115 CUX2O14529 1486 aa15□□□□□ -0.01
CCL28-201ENST00000361115 SCRIBQ14160 1630 aa14.97□□□□□ -0.01
CCL28-201ENST00000361115 DCAF8L2P0C7V8 631 aa14.85□□□□□ -0.03
CCL28-201ENST00000361115 DNAJC5Q9H3Z4 198 aa14.84□□□□□ -0.03
CCL28-201ENST00000361115 HMGXB3Q12766 1538 aa14.78□□□□□ -0.04
CCL28-201ENST00000361115 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
CCL28-201ENST00000361115 SMARCA2P51531 1590 aa14.71□□□□□ -0.05
CCL28-201ENST00000361115 PEG3Q9GZU2 1588 aa14.64□□□□□ -0.07
CCL28-201ENST00000361115 LAMC3Q9Y6N6 1575 aa14.58□□□□□ -0.08
CCL28-201ENST00000361115 SMARCA4P51532 1647 aa14.53□□□□□ -0.08
CCL28-201ENST00000361115 ERCC6Q03468 1493 aa14.52□□□□□ -0.09
CCL28-201ENST00000361115 ATAD2BQ9ULI0 1458 aa14.51□□□□□ -0.09
CCL28-201ENST00000361115 BAZ1AQ9NRL2 1556 aaPredicted RBP14.51□□□□□ -0.09
CCL28-201ENST00000361115 THOC2Q8NI27 1593 aaKnown RBP14.5□□□□□ -0.09
CCL28-201ENST00000361115 BAZ1BQ9UIG0 1483 aaKnown RBP14.36□□□□□ -0.11
CCL28-201ENST00000361115 PDS5BQ9NTI5 1447 aa14.36□□□□□ -0.11
CCL28-201ENST00000361115 WDR62O43379 1518 aa14.3□□□□□ -0.12
CCL28-201ENST00000361115 MRC2Q9UBG0 1479 aa14.24□□□□□ -0.13
CCL28-201ENST00000361115 KIF21AQ7Z4S6 1674 aa14.23□□□□□ -0.13
CCL28-201ENST00000361115 CHIC1Q5VXU3 224 aa14.19□□□□□ -0.14
CCL28-201ENST00000361115 PRDM2Q13029 1718 aa14.19□□□□□ -0.14
CCL28-201ENST00000361115 CADPSQ9ULU8 1353 aa14.14□□□□□ -0.15
CCL28-201ENST00000361115 NESP48681 1621 aa14.11□□□□□ -0.15
CCL28-201ENST00000361115 CEP164Q9UPV0 1460 aa14.07□□□□□ -0.16
CCL28-201ENST00000361115 WDR97A6NE52 1622 aa14.05□□□□□ -0.16
CCL28-201ENST00000361115 MROH2BQ7Z745 1585 aa14.02□□□□□ -0.16
CCL28-201ENST00000361115 CFTRP13569 1480 aa14□□□□□ -0.17
CCL28-201ENST00000361115 ABCC8Q09428 1581 aa14□□□□□ -0.17
CCL28-201ENST00000361115 TOP2AP11388 1531 aaKnown RBP13.96□□□□□ -0.17
CCL28-201ENST00000361115 AEBP2Q6ZN18 517 aaPredicted RBP13.95□□□□□ -0.18
CCL28-201ENST00000361115 FANCD2Q9BXW9 1451 aa13.94□□□□□ -0.18
CCL28-201ENST00000361115 IFT140Q96RY7 1462 aa13.92□□□□□ -0.18
CCL28-201ENST00000361115 OSCARQ8IYS5 282 aa13.84□□□□□ -0.19
CCL28-201ENST00000361115 WIZO95785 1651 aa13.83□□□□□ -0.2
CCL28-201ENST00000361115 RSF1Q96T23 1441 aaPredicted RBP13.82□□□□□ -0.2
CCL28-201ENST00000361115 RIMBP3CA6NJZ7 1639 aa13.81□□□□□ -0.2
CCL28-201ENST00000361115 RIMBP3BA6NNM3 1639 aa13.81□□□□□ -0.2
CCL28-201ENST00000361115 RIMBP3Q9UFD9 1639 aa13.81□□□□□ -0.2
CCL28-201ENST00000361115 URB2Q14146 1524 aaKnown RBP13.79□□□□□ -0.2
CCL28-201ENST00000361115 DNMBPQ6XZF7 1577 aa13.78□□□□□ -0.2
CCL28-201ENST00000361115 ARHGEF11O15085 1522 aa13.71□□□□□ -0.21
CCL28-201ENST00000361115 EIF4G3O43432 1585 aaKnown RBP13.7□□□□□ -0.22
CCL28-201ENST00000361115 TOPBP1Q92547 1522 aa13.68□□□□□ -0.22
CCL28-201ENST00000361115 TARBP1Q13395 1621 aaKnown RBP13.67□□□□□ -0.22
CCL28-201ENST00000361115 TRIM41Q8WV44 630 aa13.63□□□□□ -0.23
CCL28-201ENST00000361115 CHD1O14646 1710 aa13.62□□□□□ -0.23
CCL28-201ENST00000361115 SYNJ1O43426 1573 aa13.61□□□□□ -0.23
CCL28-201ENST00000361115 CLASP1Q7Z460 1538 aa13.61□□□□□ -0.23
CCL28-201ENST00000361115 MAGI1Q96QZ7 1491 aaPredicted RBP13.6□□□□□ -0.23
CCL28-201ENST00000361115 CCDC88BA6NC98 1476 aa13.53□□□□□ -0.24
CCL28-201ENST00000361115 ARAP1Q96P48 1450 aa13.51□□□□□ -0.25
CCL28-201ENST00000361115 ZNF608Q9ULD9 1512 aaPredicted RBP13.49□□□□□ -0.25
CCL28-201ENST00000361115 POLA1P09884 1462 aaPredicted RBP13.46□□□□□ -0.25
CCL28-201ENST00000361115 GRIN2BQ13224 1484 aa13.46□□□□□ -0.26
CCL28-201ENST00000361115 SYNJ2O15056 1496 aa13.45□□□□□ -0.26
CCL28-201ENST00000361115 PBRM1Q86U86 1689 aa13.44□□□□□ -0.26
CCL28-201ENST00000361115 ABCA5Q8WWZ7 1642 aa13.39□□□□□ -0.27
CCL28-201ENST00000361115 SHROOM2Q13796 1616 aa13.38□□□□□ -0.27
CCL28-201ENST00000361115 ABCA10Q8WWZ4 1543 aa13.36□□□□□ -0.27
CCL28-201ENST00000361115 SNAPC4Q5SXM2 1469 aa13.36□□□□□ -0.27
CCL28-201ENST00000361115 SOGA1O94964 1423 aa13.35□□□□□ -0.27
CCL28-201ENST00000361115 FGD5Q6ZNL6 1462 aa13.31□□□□□ -0.28
CCL28-201ENST00000361115 AQRO60306 1485 aaKnown RBP eCLIP13.29□□□□□ -0.28
CCL28-201ENST00000361115 BIVM-ERCC5R4GMW8 1640 aa13.29□□□□□ -0.28
CCL28-201ENST00000361115 ADAMTS12P58397 1594 aa13.29□□□□□ -0.28
CCL28-201ENST00000361115 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
CCL28-201ENST00000361115 NUP160Q12769 1436 aa13.27□□□□□ -0.28
CCL28-201ENST00000361115 GAPVD1Q14C86 1478 aa13.27□□□□□ -0.29
CCL28-201ENST00000361115 CUX1P39880 1505 aa13.27□□□□□ -0.29
CCL28-201ENST00000361115 MAPKBP1O60336 1514 aa13.23□□□□□ -0.29
CCL28-201ENST00000361115 GRIN2AQ12879 1464 aa13.22□□□□□ -0.29
CCL28-201ENST00000361115 FHAD1B1AJZ9 1412 aa13.2□□□□□ -0.3
CCL28-201ENST00000361115 CYB5RLQ6IPT4 315 aa13.19□□□□□ -0.3
CCL28-201ENST00000361115 TOP2BQ02880 1626 aa13.19□□□□□ -0.3
CCL28-201ENST00000361115 CEP170Q5SW79 1584 aa13.19□□□□□ -0.3
CCL28-201ENST00000361115 RAD54L2Q9Y4B4 1467 aa13.18□□□□□ -0.3
CCL28-201ENST00000361115 CHMP7Q8WUX9 453 aaPredicted RBP13.17□□□□□ -0.3
CCL28-201ENST00000361115 KIF13AQ9H1H9 1805 aa13.15□□□□□ -0.3
CCL28-201ENST00000361115 WRNQ14191 1432 aaPredicted RBP eCLIP13.15□□□□□ -0.31
CCL28-201ENST00000361115 TRHP20396 242 aaPredicted RBP13.13□□□□□ -0.31
CCL28-201ENST00000361115 EHMT2Q96KQ7 1210 aa13.11□□□□□ -0.31
CCL28-201ENST00000361115 CUL7Q14999 1698 aa13.11□□□□□ -0.31
CCL28-201ENST00000361115 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
CCL28-201ENST00000361115 RUSC2Q8N2Y8 1516 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms