RNA–Protein interactions for RNA: ENST00000358207.9

SMARCAL1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SMARCAL1, Length 3,056 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-202ENST00000358207 NISCHQ9Y2I1 1504 aa20.71■□□□□ 0.91
SMARCAL1-202ENST00000358207 CCDC180Q9P1Z9 1646 aa18.99■□□□□ 0.63
SMARCAL1-202ENST00000358207 ABCC9O60706 1549 aa18.1■□□□□ 0.49
SMARCAL1-202ENST00000358207 MYO15BQ96JP2 1530 aa17.77■□□□□ 0.43
SMARCAL1-202ENST00000358207 RB1CC1Q8TDY2 1594 aa17.75■□□□□ 0.43
SMARCAL1-202ENST00000358207 NACADO15069 1562 aa17.73■□□□□ 0.43
SMARCAL1-202ENST00000358207 UNC13AQ9UPW8 1703 aa17.49■□□□□ 0.39
SMARCAL1-202ENST00000358207 DCAF1Q9Y4B6 1507 aa17.49■□□□□ 0.39
SMARCAL1-202ENST00000358207 SHROOM4Q9ULL8 1493 aa17.4■□□□□ 0.38
SMARCAL1-202ENST00000358207 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
SMARCAL1-202ENST00000358207 BICRAQ9NZM4 1560 aa17.24■□□□□ 0.35
SMARCAL1-202ENST00000358207 DNAJC5BQ9UF47 199 aa16.81■□□□□ 0.28
SMARCAL1-202ENST00000358207 EIF4G1Q04637 1599 aaKnown RBP16.71■□□□□ 0.27
SMARCAL1-202ENST00000358207 SCRIBQ14160 1630 aa16.7■□□□□ 0.26
SMARCAL1-202ENST00000358207 CC2D2AQ9P2K1 1620 aa16.69■□□□□ 0.26
SMARCAL1-202ENST00000358207 PABPN1Q86U42 306 aaKnown RBP eCLIP16.55■□□□□ 0.24
SMARCAL1-202ENST00000358207 CECR2Q9BXF3 1484 aa16.47■□□□□ 0.23
SMARCAL1-202ENST00000358207 DCAF8L2P0C7V8 631 aa16.37■□□□□ 0.21
SMARCAL1-202ENST00000358207 PEG3Q9GZU2 1588 aa16.31■□□□□ 0.2
SMARCAL1-202ENST00000358207 HMGXB3Q12766 1538 aa16.29■□□□□ 0.2
SMARCAL1-202ENST00000358207 NCAPD3P42695 1498 aa16.24■□□□□ 0.19
SMARCAL1-202ENST00000358207 PELP1Q8IZL8 1130 aaKnown RBP16.23■□□□□ 0.19
SMARCAL1-202ENST00000358207 SMARCA4P51532 1647 aa16.21■□□□□ 0.19
SMARCAL1-202ENST00000358207 SMARCA2P51531 1590 aa16.21■□□□□ 0.18
SMARCAL1-202ENST00000358207 BAZ1AQ9NRL2 1556 aaPredicted RBP16.11■□□□□ 0.17
SMARCAL1-202ENST00000358207 ATAD2BQ9ULI0 1458 aa16.07■□□□□ 0.16
SMARCAL1-202ENST00000358207 CUX2O14529 1486 aa16.07■□□□□ 0.16
SMARCAL1-202ENST00000358207 LAMC3Q9Y6N6 1575 aa15.96■□□□□ 0.15
SMARCAL1-202ENST00000358207 THOC2Q8NI27 1593 aaKnown RBP15.91■□□□□ 0.14
SMARCAL1-202ENST00000358207 BAZ1BQ9UIG0 1483 aaKnown RBP15.85■□□□□ 0.13
SMARCAL1-202ENST00000358207 PRDM2Q13029 1718 aa15.82■□□□□ 0.12
SMARCAL1-202ENST00000358207 HRCP23327 699 aa15.8■□□□□ 0.12
SMARCAL1-202ENST00000358207 MROH2BQ7Z745 1585 aa15.8■□□□□ 0.12
SMARCAL1-202ENST00000358207 MYT1Q01538 1121 aa15.76■□□□□ 0.11
SMARCAL1-202ENST00000358207 KIF21AQ7Z4S6 1674 aa15.75■□□□□ 0.11
SMARCAL1-202ENST00000358207 WDR62O43379 1518 aa15.68■□□□□ 0.1
SMARCAL1-202ENST00000358207 ERCC6Q03468 1493 aa15.65■□□□□ 0.1
SMARCAL1-202ENST00000358207 WIZO95785 1651 aa15.64■□□□□ 0.09
SMARCAL1-202ENST00000358207 TOP2AP11388 1531 aaKnown RBP15.64■□□□□ 0.09
SMARCAL1-202ENST00000358207 NESP48681 1621 aa15.61■□□□□ 0.09
SMARCAL1-202ENST00000358207 PDS5BQ9NTI5 1447 aa15.6■□□□□ 0.09
SMARCAL1-202ENST00000358207 DNAJC5Q9H3Z4 198 aa15.59■□□□□ 0.09
SMARCAL1-202ENST00000358207 MRC2Q9UBG0 1479 aa15.56■□□□□ 0.08
SMARCAL1-202ENST00000358207 CADPSQ9ULU8 1353 aa15.54■□□□□ 0.08
SMARCAL1-202ENST00000358207 PPARGC1BQ86YN6 1023 aaKnown RBP15.54■□□□□ 0.08
SMARCAL1-202ENST00000358207 CFTRP13569 1480 aa15.53■□□□□ 0.08
SMARCAL1-202ENST00000358207 SUPT5HO00267 1087 aaKnown RBP15.5■□□□□ 0.07
SMARCAL1-202ENST00000358207 RSF1Q96T23 1441 aaPredicted RBP15.46■□□□□ 0.07
SMARCAL1-202ENST00000358207 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
SMARCAL1-202ENST00000358207 CEP164Q9UPV0 1460 aa15.42■□□□□ 0.06
SMARCAL1-202ENST00000358207 WDR97A6NE52 1622 aa15.39■□□□□ 0.05
SMARCAL1-202ENST00000358207 FANCD2Q9BXW9 1451 aa15.37■□□□□ 0.05
SMARCAL1-202ENST00000358207 ABCC8Q09428 1581 aa15.31■□□□□ 0.04
SMARCAL1-202ENST00000358207 URB2Q14146 1524 aaKnown RBP15.3■□□□□ 0.04
SMARCAL1-202ENST00000358207 DNMBPQ6XZF7 1577 aa15.25■□□□□ 0.03
SMARCAL1-202ENST00000358207 CCDC88BA6NC98 1476 aa15.22■□□□□ 0.03
SMARCAL1-202ENST00000358207 IFT140Q96RY7 1462 aa15.21■□□□□ 0.03
SMARCAL1-202ENST00000358207 TARBP1Q13395 1621 aaKnown RBP15.21■□□□□ 0.02
SMARCAL1-202ENST00000358207 TOPBP1Q92547 1522 aa15.16■□□□□ 0.02
SMARCAL1-202ENST00000358207 EIF4G3O43432 1585 aaKnown RBP15.12■□□□□ 0.01
SMARCAL1-202ENST00000358207 PCGF6Q9BYE7 350 aa15.11■□□□□ 0.01
SMARCAL1-202ENST00000358207 CHD1O14646 1710 aa15.03■□□□□ -0
SMARCAL1-202ENST00000358207 TTBK1Q5TCY1 1321 aaPredicted RBP15.03■□□□□ -0
SMARCAL1-202ENST00000358207 RIMBP3CA6NJZ7 1639 aa15□□□□□ -0.01
SMARCAL1-202ENST00000358207 RIMBP3BA6NNM3 1639 aa15□□□□□ -0.01
SMARCAL1-202ENST00000358207 RIMBP3Q9UFD9 1639 aa15□□□□□ -0.01
SMARCAL1-202ENST00000358207 BIVM-ERCC5R4GMW8 1640 aa14.97□□□□□ -0.01
SMARCAL1-202ENST00000358207 PBRM1Q86U86 1689 aa14.96□□□□□ -0.01
SMARCAL1-202ENST00000358207 CLASP1Q7Z460 1538 aa14.96□□□□□ -0.01
SMARCAL1-202ENST00000358207 POLA1P09884 1462 aaPredicted RBP14.96□□□□□ -0.02
SMARCAL1-202ENST00000358207 ABCA5Q8WWZ7 1642 aa14.95□□□□□ -0.02
SMARCAL1-202ENST00000358207 ZNF608Q9ULD9 1512 aaPredicted RBP14.93□□□□□ -0.02
SMARCAL1-202ENST00000358207 CUX1P39880 1505 aa14.91□□□□□ -0.02
SMARCAL1-202ENST00000358207 MAGI1Q96QZ7 1491 aaPredicted RBP14.91□□□□□ -0.02
SMARCAL1-202ENST00000358207 PRKCSHP14314 528 aaPredicted RBP14.89□□□□□ -0.03
SMARCAL1-202ENST00000358207 ARHGEF11O15085 1522 aa14.86□□□□□ -0.03
SMARCAL1-202ENST00000358207 BCL11AQ9H165 835 aa14.85□□□□□ -0.03
SMARCAL1-202ENST00000358207 ABCA10Q8WWZ4 1543 aa14.85□□□□□ -0.03
SMARCAL1-202ENST00000358207 SYNJ1O43426 1573 aa14.84□□□□□ -0.03
SMARCAL1-202ENST00000358207 TOP2BQ02880 1626 aa14.84□□□□□ -0.03
SMARCAL1-202ENST00000358207 OSCARQ8IYS5 282 aa14.83□□□□□ -0.04
SMARCAL1-202ENST00000358207 FGD5Q6ZNL6 1462 aa14.83□□□□□ -0.04
SMARCAL1-202ENST00000358207 SHROOM2Q13796 1616 aa14.8□□□□□ -0.04
SMARCAL1-202ENST00000358207 GRIN2BQ13224 1484 aa14.79□□□□□ -0.04
SMARCAL1-202ENST00000358207 SYNJ2O15056 1496 aa14.77□□□□□ -0.04
SMARCAL1-202ENST00000358207 FAM9AQ8IZU1 332 aaPredicted RBP14.77□□□□□ -0.05
SMARCAL1-202ENST00000358207 ADAMTS12P58397 1594 aa14.77□□□□□ -0.05
SMARCAL1-202ENST00000358207 SOGA1O94964 1423 aa14.75□□□□□ -0.05
SMARCAL1-202ENST00000358207 ACIN1Q9UKV3 1341 aaKnown RBP14.75□□□□□ -0.05
SMARCAL1-202ENST00000358207 ERICH3Q5RHP9 1530 aa14.73□□□□□ -0.05
SMARCAL1-202ENST00000358207 SNAPC4Q5SXM2 1469 aa14.73□□□□□ -0.05
SMARCAL1-202ENST00000358207 NEUROD1Q13562 356 aa14.72□□□□□ -0.05
SMARCAL1-202ENST00000358207 ARAP1Q96P48 1450 aa14.72□□□□□ -0.05
SMARCAL1-202ENST00000358207 AQRO60306 1485 aaKnown RBP eCLIP14.7□□□□□ -0.06
SMARCAL1-202ENST00000358207 RAD54L2Q9Y4B4 1467 aa14.7□□□□□ -0.06
SMARCAL1-202ENST00000358207 GTF3C3Q9Y5Q9 886 aa14.68□□□□□ -0.06
SMARCAL1-202ENST00000358207 GAPVD1Q14C86 1478 aa14.66□□□□□ -0.06
SMARCAL1-202ENST00000358207 NUP160Q12769 1436 aa14.66□□□□□ -0.06
SMARCAL1-202ENST00000358207 CUL7Q14999 1698 aa14.6□□□□□ -0.07
SMARCAL1-202ENST00000358207 GRIN2AQ12879 1464 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms