RNA–Protein interactions for RNA: ENST00000357482.5

USP6-202, Transcript of ubiquitin specific peptidase 6, humanhuman

TSL 1 (best)

Gene USP6, Length 1,947 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6-202ENST00000357482 NISCHQ9Y2I1 1504 aa32.3■■■□□ 2.76
USP6-202ENST00000357482 CCDC180Q9P1Z9 1646 aa28.84■■■□□ 2.21
USP6-202ENST00000357482 ABCC9O60706 1549 aa28.61■■■□□ 2.17
USP6-202ENST00000357482 RB1CC1Q8TDY2 1594 aa27.34■■□□□ 1.97
USP6-202ENST00000357482 DCAF8L2P0C7V8 631 aa27.28■■□□□ 1.96
USP6-202ENST00000357482 NACADO15069 1562 aa27.2■■□□□ 1.94
USP6-202ENST00000357482 MYO15BQ96JP2 1530 aa26.86■■□□□ 1.89
USP6-202ENST00000357482 ZCCHC6Q5VYS8 1495 aaKnown RBP26.82■■□□□ 1.88
USP6-202ENST00000357482 PABPN1Q86U42 306 aaKnown RBP eCLIP26.7■■□□□ 1.86
USP6-202ENST00000357482 UNC13AQ9UPW8 1703 aa26.68■■□□□ 1.86
USP6-202ENST00000357482 DCAF1Q9Y4B6 1507 aa26.65■■□□□ 1.86
USP6-202ENST00000357482 DNAJC5BQ9UF47 199 aa26.49■■□□□ 1.83
USP6-202ENST00000357482 BICRAQ9NZM4 1560 aa26.47■■□□□ 1.83
USP6-202ENST00000357482 SCRIBQ14160 1630 aa26.37■■□□□ 1.81
USP6-202ENST00000357482 SHROOM4Q9ULL8 1493 aa26.15■■□□□ 1.78
USP6-202ENST00000357482 EIF4G1Q04637 1599 aaKnown RBP25.84■■□□□ 1.73
USP6-202ENST00000357482 CC2D2AQ9P2K1 1620 aa25.82■■□□□ 1.72
USP6-202ENST00000357482 PELP1Q8IZL8 1130 aaKnown RBP25.77■■□□□ 1.72
USP6-202ENST00000357482 CECR2Q9BXF3 1484 aa25.72■■□□□ 1.71
USP6-202ENST00000357482 MYT1Q01538 1121 aa25.33■■□□□ 1.65
USP6-202ENST00000357482 SMARCA4P51532 1647 aa25.14■■□□□ 1.62
USP6-202ENST00000357482 NCAPD3P42695 1498 aa25.08■■□□□ 1.61
USP6-202ENST00000357482 BAZ1AQ9NRL2 1556 aaPredicted RBP25.07■■□□□ 1.6
USP6-202ENST00000357482 ATAD2BQ9ULI0 1458 aa25.07■■□□□ 1.6
USP6-202ENST00000357482 SMARCA2P51531 1590 aa25.04■■□□□ 1.6
USP6-202ENST00000357482 HMGXB3Q12766 1538 aa24.95■■□□□ 1.58
USP6-202ENST00000357482 MROH2BQ7Z745 1585 aa24.9■■□□□ 1.58
USP6-202ENST00000357482 BAZ1BQ9UIG0 1483 aaKnown RBP24.9■■□□□ 1.58
USP6-202ENST00000357482 PEG3Q9GZU2 1588 aa24.84■■□□□ 1.57
USP6-202ENST00000357482 ERCC6Q03468 1493 aa24.72■■□□□ 1.55
USP6-202ENST00000357482 NESP48681 1621 aa24.64■■□□□ 1.54
USP6-202ENST00000357482 WIZO95785 1651 aa24.63■■□□□ 1.53
USP6-202ENST00000357482 LAMC3Q9Y6N6 1575 aa24.5■■□□□ 1.51
USP6-202ENST00000357482 HRCP23327 699 aa24.5■■□□□ 1.51
USP6-202ENST00000357482 CUX2O14529 1486 aa24.49■■□□□ 1.51
USP6-202ENST00000357482 RSF1Q96T23 1441 aaPredicted RBP24.49■■□□□ 1.51
USP6-202ENST00000357482 PDS5BQ9NTI5 1447 aa24.37■■□□□ 1.49
USP6-202ENST00000357482 CADPSQ9ULU8 1353 aa24.36■■□□□ 1.49
USP6-202ENST00000357482 KIF21AQ7Z4S6 1674 aa24.34■■□□□ 1.49
USP6-202ENST00000357482 TOP2AP11388 1531 aaKnown RBP24.33■■□□□ 1.49
USP6-202ENST00000357482 THOC2Q8NI27 1593 aaKnown RBP24.3■■□□□ 1.48
USP6-202ENST00000357482 TTBK1Q5TCY1 1321 aaPredicted RBP24.21■■□□□ 1.47
USP6-202ENST00000357482 CFTRP13569 1480 aa24.14■■□□□ 1.45
USP6-202ENST00000357482 MRC2Q9UBG0 1479 aa24.14■■□□□ 1.45
USP6-202ENST00000357482 CEP164Q9UPV0 1460 aa24.13■■□□□ 1.45
USP6-202ENST00000357482 DNAJC5Q9H3Z4 198 aa24.12■■□□□ 1.45
USP6-202ENST00000357482 FANCD2Q9BXW9 1451 aa24.11■■□□□ 1.45
USP6-202ENST00000357482 CCDC88BA6NC98 1476 aa24.05■■□□□ 1.44
USP6-202ENST00000357482 WDR62O43379 1518 aa24.04■■□□□ 1.44
USP6-202ENST00000357482 PRDM2Q13029 1718 aa23.93■■□□□ 1.42
USP6-202ENST00000357482 URB2Q14146 1524 aaKnown RBP23.87■■□□□ 1.41
USP6-202ENST00000357482 SUPT5HO00267 1087 aaKnown RBP23.76■■□□□ 1.39
USP6-202ENST00000357482 TOPBP1Q92547 1522 aa23.68■■□□□ 1.38
USP6-202ENST00000357482 ABCC8Q09428 1581 aa23.65■■□□□ 1.38
USP6-202ENST00000357482 DNMBPQ6XZF7 1577 aa23.62■■□□□ 1.37
USP6-202ENST00000357482 IFT140Q96RY7 1462 aa23.61■■□□□ 1.37
USP6-202ENST00000357482 ZNF608Q9ULD9 1512 aaPredicted RBP23.54■■□□□ 1.36
USP6-202ENST00000357482 SCAF1Q9H7N4 1312 aaKnown RBP23.52■■□□□ 1.36
USP6-202ENST00000357482 OSCARQ8IYS5 282 aa23.46■■□□□ 1.35
USP6-202ENST00000357482 POLA1P09884 1462 aaPredicted RBP23.46■■□□□ 1.35
USP6-202ENST00000357482 EIF4G3O43432 1585 aaKnown RBP23.44■■□□□ 1.34
USP6-202ENST00000357482 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
USP6-202ENST00000357482 AQRO60306 1485 aaKnown RBP eCLIP23.38■■□□□ 1.33
USP6-202ENST00000357482 RAD54L2Q9Y4B4 1467 aa23.38■■□□□ 1.33
USP6-202ENST00000357482 SOGA1O94964 1423 aa23.38■■□□□ 1.33
USP6-202ENST00000357482 CUX1P39880 1505 aa23.37■■□□□ 1.33
USP6-202ENST00000357482 FGD5Q6ZNL6 1462 aa23.37■■□□□ 1.33
USP6-202ENST00000357482 PPARGC1BQ86YN6 1023 aaKnown RBP23.36■■□□□ 1.33
USP6-202ENST00000357482 TRIM41Q8WV44 630 aa23.31■■□□□ 1.32
USP6-202ENST00000357482 TDRD9Q8NDG6 1382 aaKnown RBP23.3■■□□□ 1.32
USP6-202ENST00000357482 FBLN2P98095 1184 aa23.26■■□□□ 1.31
USP6-202ENST00000357482 CHD1O14646 1710 aa23.21■■□□□ 1.31
USP6-202ENST00000357482 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
USP6-202ENST00000357482 SNAPC4Q5SXM2 1469 aa23.16■■□□□ 1.3
USP6-202ENST00000357482 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
USP6-202ENST00000357482 WRNQ14191 1432 aaPredicted RBP eCLIP23.14■■□□□ 1.29
USP6-202ENST00000357482 PCGF6Q9BYE7 350 aa23.13■■□□□ 1.29
USP6-202ENST00000357482 RIMBP3CA6NJZ7 1639 aa23.1■■□□□ 1.29
USP6-202ENST00000357482 RIMBP3BA6NNM3 1639 aa23.1■■□□□ 1.29
USP6-202ENST00000357482 RIMBP3Q9UFD9 1639 aa23.1■■□□□ 1.29
USP6-202ENST00000357482 GAPVD1Q14C86 1478 aa23.1■■□□□ 1.29
USP6-202ENST00000357482 CHMP7Q8WUX9 453 aaPredicted RBP23.1■■□□□ 1.29
USP6-202ENST00000357482 ABCA10Q8WWZ4 1543 aa23.09■■□□□ 1.29
USP6-202ENST00000357482 MAGI1Q96QZ7 1491 aaPredicted RBP23.09■■□□□ 1.29
USP6-202ENST00000357482 TOP2BQ02880 1626 aa23.09■■□□□ 1.29
USP6-202ENST00000357482 SYNJ1O43426 1573 aa23.08■■□□□ 1.29
USP6-202ENST00000357482 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.29
USP6-202ENST00000357482 PBRM1Q86U86 1689 aa23.07■■□□□ 1.28
USP6-202ENST00000357482 ARHGEF11O15085 1522 aa23.06■■□□□ 1.28
USP6-202ENST00000357482 ABCA5Q8WWZ7 1642 aa23.03■■□□□ 1.28
USP6-202ENST00000357482 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
USP6-202ENST00000357482 SYNJ2O15056 1496 aa23.02■■□□□ 1.27
USP6-202ENST00000357482 CYB5RLQ6IPT4 315 aa22.92■■□□□ 1.26
USP6-202ENST00000357482 CLASP1Q7Z460 1538 aa22.91■■□□□ 1.26
USP6-202ENST00000357482 ACIN1Q9UKV3 1341 aaKnown RBP22.86■■□□□ 1.25
USP6-202ENST00000357482 ADAMTS12P58397 1594 aa22.85■■□□□ 1.25
USP6-202ENST00000357482 ARAP1Q96P48 1450 aa22.84■■□□□ 1.25
USP6-202ENST00000357482 GRIN2AQ12879 1464 aa22.83■■□□□ 1.25
USP6-202ENST00000357482 ERICH3Q5RHP9 1530 aa22.81■■□□□ 1.24
USP6-202ENST00000357482 FHAD1B1AJZ9 1412 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms