RNA–Protein interactions for RNA: ENST00000340424.4

SIRPB3P-201, Transcript of signal regulatory protein beta 3, pseudogene, humanhuman

BASIC

Gene SIRPB3P, Length 1,216 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIRPB3P-201ENST00000340424 NISCHQ9Y2I1 1504 aa32.77■■■□□ 2.84
SIRPB3P-201ENST00000340424 CCDC180Q9P1Z9 1646 aa29.3■■■□□ 2.28
SIRPB3P-201ENST00000340424 AEBP2Q6ZN18 517 aaPredicted RBP29.28■■■□□ 2.28
SIRPB3P-201ENST00000340424 CHIC1Q5VXU3 224 aa28.92■■■□□ 2.22
SIRPB3P-201ENST00000340424 ABCC9O60706 1549 aa28.74■■■□□ 2.19
SIRPB3P-201ENST00000340424 RB1CC1Q8TDY2 1594 aa27.66■■■□□ 2.02
SIRPB3P-201ENST00000340424 NACADO15069 1562 aa27.6■■■□□ 2.01
SIRPB3P-201ENST00000340424 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
SIRPB3P-201ENST00000340424 DCAF8L2P0C7V8 631 aa27.35■■□□□ 1.97
SIRPB3P-201ENST00000340424 ZCCHC6Q5VYS8 1495 aaKnown RBP27.26■■□□□ 1.95
SIRPB3P-201ENST00000340424 DCAF1Q9Y4B6 1507 aa27.18■■□□□ 1.94
SIRPB3P-201ENST00000340424 UNC13AQ9UPW8 1703 aa26.96■■□□□ 1.91
SIRPB3P-201ENST00000340424 PABPN1Q86U42 306 aaKnown RBP eCLIP26.77■■□□□ 1.88
SIRPB3P-201ENST00000340424 BICRAQ9NZM4 1560 aa26.76■■□□□ 1.87
SIRPB3P-201ENST00000340424 SHROOM4Q9ULL8 1493 aa26.63■■□□□ 1.85
SIRPB3P-201ENST00000340424 SCRIBQ14160 1630 aa26.61■■□□□ 1.85
SIRPB3P-201ENST00000340424 DNAJC5BQ9UF47 199 aa26.51■■□□□ 1.83
SIRPB3P-201ENST00000340424 EIF4G1Q04637 1599 aaKnown RBP26.11■■□□□ 1.77
SIRPB3P-201ENST00000340424 CC2D2AQ9P2K1 1620 aa26.03■■□□□ 1.76
SIRPB3P-201ENST00000340424 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
SIRPB3P-201ENST00000340424 SMARCA4P51532 1647 aa25.47■■□□□ 1.67
SIRPB3P-201ENST00000340424 BAZ1AQ9NRL2 1556 aaPredicted RBP25.45■■□□□ 1.66
SIRPB3P-201ENST00000340424 NCAPD3P42695 1498 aa25.44■■□□□ 1.66
SIRPB3P-201ENST00000340424 SMARCA2P51531 1590 aa25.4■■□□□ 1.66
SIRPB3P-201ENST00000340424 ATAD2BQ9ULI0 1458 aa25.39■■□□□ 1.65
SIRPB3P-201ENST00000340424 PHF23Q9BUL5 403 aaPredicted RBP25.37■■□□□ 1.65
SIRPB3P-201ENST00000340424 HMGXB3Q12766 1538 aa25.32■■□□□ 1.64
SIRPB3P-201ENST00000340424 PEG3Q9GZU2 1588 aa25.28■■□□□ 1.64
SIRPB3P-201ENST00000340424 MROH2BQ7Z745 1585 aa25.2■■□□□ 1.62
SIRPB3P-201ENST00000340424 BAZ1BQ9UIG0 1483 aaKnown RBP25.18■■□□□ 1.62
SIRPB3P-201ENST00000340424 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
SIRPB3P-201ENST00000340424 WIZO95785 1651 aa24.91■■□□□ 1.58
SIRPB3P-201ENST00000340424 ERCC6Q03468 1493 aa24.86■■□□□ 1.57
SIRPB3P-201ENST00000340424 RSF1Q96T23 1441 aaPredicted RBP24.86■■□□□ 1.57
SIRPB3P-201ENST00000340424 LAMC3Q9Y6N6 1575 aa24.82■■□□□ 1.56
SIRPB3P-201ENST00000340424 NESP48681 1621 aa24.79■■□□□ 1.56
SIRPB3P-201ENST00000340424 CUX2O14529 1486 aa24.72■■□□□ 1.55
SIRPB3P-201ENST00000340424 TOP2AP11388 1531 aaKnown RBP24.7■■□□□ 1.54
SIRPB3P-201ENST00000340424 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
SIRPB3P-201ENST00000340424 PDS5BQ9NTI5 1447 aa24.66■■□□□ 1.54
SIRPB3P-201ENST00000340424 THOC2Q8NI27 1593 aaKnown RBP24.54■■□□□ 1.52
SIRPB3P-201ENST00000340424 KIF21AQ7Z4S6 1674 aa24.53■■□□□ 1.52
SIRPB3P-201ENST00000340424 CFTRP13569 1480 aa24.49■■□□□ 1.51
SIRPB3P-201ENST00000340424 MRC2Q9UBG0 1479 aa24.39■■□□□ 1.5
SIRPB3P-201ENST00000340424 CEP164Q9UPV0 1460 aa24.38■■□□□ 1.49
SIRPB3P-201ENST00000340424 CCDC88BA6NC98 1476 aa24.37■■□□□ 1.49
SIRPB3P-201ENST00000340424 FANCD2Q9BXW9 1451 aa24.37■■□□□ 1.49
SIRPB3P-201ENST00000340424 WDR62O43379 1518 aa24.33■■□□□ 1.49
SIRPB3P-201ENST00000340424 PRDM2Q13029 1718 aa24.3■■□□□ 1.48
SIRPB3P-201ENST00000340424 DNAJC5Q9H3Z4 198 aa24.15■■□□□ 1.46
SIRPB3P-201ENST00000340424 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
SIRPB3P-201ENST00000340424 ABCC8Q09428 1581 aa24.03■■□□□ 1.44
SIRPB3P-201ENST00000340424 SUPT5HO00267 1087 aaKnown RBP23.97■■□□□ 1.43
SIRPB3P-201ENST00000340424 TOPBP1Q92547 1522 aa23.95■■□□□ 1.43
SIRPB3P-201ENST00000340424 DNMBPQ6XZF7 1577 aa23.94■■□□□ 1.42
SIRPB3P-201ENST00000340424 IFT140Q96RY7 1462 aa23.9■■□□□ 1.42
SIRPB3P-201ENST00000340424 POLA1P09884 1462 aaPredicted RBP23.74■■□□□ 1.39
SIRPB3P-201ENST00000340424 ZNF608Q9ULD9 1512 aaPredicted RBP23.73■■□□□ 1.39
SIRPB3P-201ENST00000340424 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
SIRPB3P-201ENST00000340424 EIF4G3O43432 1585 aaKnown RBP23.67■■□□□ 1.38
SIRPB3P-201ENST00000340424 CUX1P39880 1505 aa23.67■■□□□ 1.38
SIRPB3P-201ENST00000340424 FGD5Q6ZNL6 1462 aa23.63■■□□□ 1.37
SIRPB3P-201ENST00000340424 PLPPR3Q6T4P5 718 aa23.63■■□□□ 1.37
SIRPB3P-201ENST00000340424 WDR97A6NE52 1622 aa23.62■■□□□ 1.37
SIRPB3P-201ENST00000340424 SOGA1O94964 1423 aa23.62■■□□□ 1.37
SIRPB3P-201ENST00000340424 OSCARQ8IYS5 282 aa23.6■■□□□ 1.37
SIRPB3P-201ENST00000340424 RAD54L2Q9Y4B4 1467 aa23.58■■□□□ 1.37
SIRPB3P-201ENST00000340424 AQRO60306 1485 aaKnown RBP eCLIP23.56■■□□□ 1.36
SIRPB3P-201ENST00000340424 TDRD9Q8NDG6 1382 aaKnown RBP23.48■■□□□ 1.35
SIRPB3P-201ENST00000340424 WRNQ14191 1432 aaPredicted RBP eCLIP23.46■■□□□ 1.35
SIRPB3P-201ENST00000340424 TOP2BQ02880 1626 aa23.45■■□□□ 1.34
SIRPB3P-201ENST00000340424 BIVM-ERCC5R4GMW8 1640 aa23.45■■□□□ 1.34
SIRPB3P-201ENST00000340424 ABCA10Q8WWZ4 1543 aa23.43■■□□□ 1.34
SIRPB3P-201ENST00000340424 GRIN2BQ13224 1484 aa23.41■■□□□ 1.34
SIRPB3P-201ENST00000340424 MAGI1Q96QZ7 1491 aaPredicted RBP23.4■■□□□ 1.34
SIRPB3P-201ENST00000340424 CHD1O14646 1710 aa23.39■■□□□ 1.33
SIRPB3P-201ENST00000340424 SYNJ1O43426 1573 aa23.38■■□□□ 1.33
SIRPB3P-201ENST00000340424 SNAPC4Q5SXM2 1469 aa23.37■■□□□ 1.33
SIRPB3P-201ENST00000340424 GAPVD1Q14C86 1478 aa23.36■■□□□ 1.33
SIRPB3P-201ENST00000340424 ABCA5Q8WWZ7 1642 aa23.35■■□□□ 1.33
SIRPB3P-201ENST00000340424 PBRM1Q86U86 1689 aa23.32■■□□□ 1.32
SIRPB3P-201ENST00000340424 FBLN2P98095 1184 aa23.31■■□□□ 1.32
SIRPB3P-201ENST00000340424 SYNJ2O15056 1496 aa23.3■■□□□ 1.32
SIRPB3P-201ENST00000340424 CHMP7Q8WUX9 453 aaPredicted RBP23.26■■□□□ 1.31
SIRPB3P-201ENST00000340424 RIMBP3CA6NJZ7 1639 aa23.23■■□□□ 1.31
SIRPB3P-201ENST00000340424 RIMBP3BA6NNM3 1639 aa23.23■■□□□ 1.31
SIRPB3P-201ENST00000340424 RIMBP3Q9UFD9 1639 aa23.23■■□□□ 1.31
SIRPB3P-201ENST00000340424 ARHGEF11O15085 1522 aa23.22■■□□□ 1.31
SIRPB3P-201ENST00000340424 TRIM41Q8WV44 630 aa23.19■■□□□ 1.3
SIRPB3P-201ENST00000340424 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
SIRPB3P-201ENST00000340424 CLASP1Q7Z460 1538 aa23.17■■□□□ 1.3
SIRPB3P-201ENST00000340424 ADAMTS12P58397 1594 aa23.14■■□□□ 1.29
SIRPB3P-201ENST00000340424 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
SIRPB3P-201ENST00000340424 GRIN2AQ12879 1464 aa23.1■■□□□ 1.29
SIRPB3P-201ENST00000340424 FOXD1Q16676 465 aa23.05■■□□□ 1.28
SIRPB3P-201ENST00000340424 NUP160Q12769 1436 aa23.01■■□□□ 1.27
SIRPB3P-201ENST00000340424 KIF27Q86VH2 1401 aa23.01■■□□□ 1.27
SIRPB3P-201ENST00000340424 ARAP1Q96P48 1450 aa23■■□□□ 1.27
SIRPB3P-201ENST00000340424 CYB5RLQ6IPT4 315 aa22.96■■□□□ 1.27
SIRPB3P-201ENST00000340424 CEP170Q5SW79 1584 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 201.4 ms