RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 NISCHQ9Y2I1 1504 aa24.51■■□□□ 1.51
RTN3-201ENST00000338850 CCDC180Q9P1Z9 1646 aa21.94■■□□□ 1.1
RTN3-201ENST00000338850 ABCC9O60706 1549 aa21.87■■□□□ 1.09
RTN3-201ENST00000338850 RB1CC1Q8TDY2 1594 aa20.85■□□□□ 0.93
RTN3-201ENST00000338850 NACADO15069 1562 aa20.73■□□□□ 0.91
RTN3-201ENST00000338850 DCAF8L2P0C7V8 631 aa20.61■□□□□ 0.89
RTN3-201ENST00000338850 MYO15BQ96JP2 1530 aa20.5■□□□□ 0.87
RTN3-201ENST00000338850 DNAJC5BQ9UF47 199 aa20.47■□□□□ 0.87
RTN3-201ENST00000338850 PABPN1Q86U42 306 aaKnown RBP eCLIP20.38■□□□□ 0.85
RTN3-201ENST00000338850 UNC13AQ9UPW8 1703 aa20.34■□□□□ 0.85
RTN3-201ENST00000338850 ZCCHC6Q5VYS8 1495 aaKnown RBP20.34■□□□□ 0.85
RTN3-201ENST00000338850 DCAF1Q9Y4B6 1507 aa20.27■□□□□ 0.83
RTN3-201ENST00000338850 BICRAQ9NZM4 1560 aa20.26■□□□□ 0.83
RTN3-201ENST00000338850 SHROOM4Q9ULL8 1493 aa20■□□□□ 0.79
RTN3-201ENST00000338850 SCRIBQ14160 1630 aa20■□□□□ 0.79
RTN3-201ENST00000338850 CC2D2AQ9P2K1 1620 aa19.75■□□□□ 0.75
RTN3-201ENST00000338850 EIF4G1Q04637 1599 aaKnown RBP19.74■□□□□ 0.75
RTN3-201ENST00000338850 CECR2Q9BXF3 1484 aa19.7■□□□□ 0.74
RTN3-201ENST00000338850 NCAPD3P42695 1498 aa19.16■□□□□ 0.66
RTN3-201ENST00000338850 ATAD2BQ9ULI0 1458 aa19.11■□□□□ 0.65
RTN3-201ENST00000338850 SMARCA4P51532 1647 aa19.09■□□□□ 0.65
RTN3-201ENST00000338850 SMARCA2P51531 1590 aa19.05■□□□□ 0.64
RTN3-201ENST00000338850 BAZ1AQ9NRL2 1556 aaPredicted RBP19.02■□□□□ 0.63
RTN3-201ENST00000338850 HMGXB3Q12766 1538 aa19.01■□□□□ 0.63
RTN3-201ENST00000338850 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
RTN3-201ENST00000338850 BAZ1BQ9UIG0 1483 aaKnown RBP18.91■□□□□ 0.62
RTN3-201ENST00000338850 MROH2BQ7Z745 1585 aa18.89■□□□□ 0.62
RTN3-201ENST00000338850 ERCC6Q03468 1493 aa18.87■□□□□ 0.61
RTN3-201ENST00000338850 CUX2O14529 1486 aa18.83■□□□□ 0.6
RTN3-201ENST00000338850 NESP48681 1621 aa18.82■□□□□ 0.6
RTN3-201ENST00000338850 DNAJC5Q9H3Z4 198 aa18.73■□□□□ 0.59
RTN3-201ENST00000338850 LAMC3Q9Y6N6 1575 aa18.69■□□□□ 0.58
RTN3-201ENST00000338850 WIZO95785 1651 aa18.64■□□□□ 0.57
RTN3-201ENST00000338850 THOC2Q8NI27 1593 aaKnown RBP18.61■□□□□ 0.57
RTN3-201ENST00000338850 PDS5BQ9NTI5 1447 aa18.58■□□□□ 0.57
RTN3-201ENST00000338850 CADPSQ9ULU8 1353 aa18.57■□□□□ 0.56
RTN3-201ENST00000338850 KIF21AQ7Z4S6 1674 aa18.54■□□□□ 0.56
RTN3-201ENST00000338850 RSF1Q96T23 1441 aaPredicted RBP18.54■□□□□ 0.56
RTN3-201ENST00000338850 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
RTN3-201ENST00000338850 MRC2Q9UBG0 1479 aa18.43■□□□□ 0.54
RTN3-201ENST00000338850 CFTRP13569 1480 aa18.39■□□□□ 0.53
RTN3-201ENST00000338850 WDR62O43379 1518 aa18.39■□□□□ 0.53
RTN3-201ENST00000338850 CEP164Q9UPV0 1460 aa18.37■□□□□ 0.53
RTN3-201ENST00000338850 FANCD2Q9BXW9 1451 aa18.36■□□□□ 0.53
RTN3-201ENST00000338850 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
RTN3-201ENST00000338850 CCDC88BA6NC98 1476 aa18.23■□□□□ 0.51
RTN3-201ENST00000338850 URB2Q14146 1524 aaKnown RBP18.21■□□□□ 0.51
RTN3-201ENST00000338850 PRDM2Q13029 1718 aa18.14■□□□□ 0.49
RTN3-201ENST00000338850 CHIC1Q5VXU3 224 aa18.03■□□□□ 0.48
RTN3-201ENST00000338850 TOPBP1Q92547 1522 aa18.03■□□□□ 0.48
RTN3-201ENST00000338850 IFT140Q96RY7 1462 aa18.01■□□□□ 0.47
RTN3-201ENST00000338850 ABCC8Q09428 1581 aa17.97■□□□□ 0.47
RTN3-201ENST00000338850 OSCARQ8IYS5 282 aa17.97■□□□□ 0.47
RTN3-201ENST00000338850 ZNF608Q9ULD9 1512 aaPredicted RBP17.97■□□□□ 0.47
RTN3-201ENST00000338850 DNMBPQ6XZF7 1577 aa17.96■□□□□ 0.46
RTN3-201ENST00000338850 TRIM41Q8WV44 630 aa17.91■□□□□ 0.46
RTN3-201ENST00000338850 EIF4G3O43432 1585 aaKnown RBP17.86■□□□□ 0.45
RTN3-201ENST00000338850 POLA1P09884 1462 aaPredicted RBP17.85■□□□□ 0.45
RTN3-201ENST00000338850 TARBP1Q13395 1621 aaKnown RBP17.85■□□□□ 0.45
RTN3-201ENST00000338850 AQRO60306 1485 aaKnown RBP eCLIP17.81■□□□□ 0.44
RTN3-201ENST00000338850 RAD54L2Q9Y4B4 1467 aa17.78■□□□□ 0.44
RTN3-201ENST00000338850 SOGA1O94964 1423 aa17.76■□□□□ 0.43
RTN3-201ENST00000338850 FGD5Q6ZNL6 1462 aa17.75■□□□□ 0.43
RTN3-201ENST00000338850 CUX1P39880 1505 aa17.74■□□□□ 0.43
RTN3-201ENST00000338850 TDRD9Q8NDG6 1382 aaKnown RBP17.72■□□□□ 0.43
RTN3-201ENST00000338850 RIMBP3CA6NJZ7 1639 aa17.72■□□□□ 0.43
RTN3-201ENST00000338850 RIMBP3BA6NNM3 1639 aa17.72■□□□□ 0.43
RTN3-201ENST00000338850 RIMBP3Q9UFD9 1639 aa17.72■□□□□ 0.43
RTN3-201ENST00000338850 ARHGEF11O15085 1522 aa17.69■□□□□ 0.42
RTN3-201ENST00000338850 CHD1O14646 1710 aa17.68■□□□□ 0.42
RTN3-201ENST00000338850 WDR97A6NE52 1622 aa17.67■□□□□ 0.42
RTN3-201ENST00000338850 FBLN2P98095 1184 aa17.65■□□□□ 0.42
RTN3-201ENST00000338850 SNAPC4Q5SXM2 1469 aa17.63■□□□□ 0.41
RTN3-201ENST00000338850 GRIN2BQ13224 1484 aa17.6■□□□□ 0.41
RTN3-201ENST00000338850 MAGI1Q96QZ7 1491 aaPredicted RBP17.59■□□□□ 0.41
RTN3-201ENST00000338850 CHMP7Q8WUX9 453 aaPredicted RBP17.55■□□□□ 0.4
RTN3-201ENST00000338850 ABCA10Q8WWZ4 1543 aa17.55■□□□□ 0.4
RTN3-201ENST00000338850 GAPVD1Q14C86 1478 aa17.55■□□□□ 0.4
RTN3-201ENST00000338850 CYB5RLQ6IPT4 315 aa17.54■□□□□ 0.4
RTN3-201ENST00000338850 CLASP1Q7Z460 1538 aa17.53■□□□□ 0.4
RTN3-201ENST00000338850 SYNJ2O15056 1496 aa17.53■□□□□ 0.4
RTN3-201ENST00000338850 ARAP1Q96P48 1450 aa17.53■□□□□ 0.4
RTN3-201ENST00000338850 ABCA5Q8WWZ7 1642 aa17.5■□□□□ 0.39
RTN3-201ENST00000338850 SYNJ1O43426 1573 aa17.5■□□□□ 0.39
RTN3-201ENST00000338850 AEBP2Q6ZN18 517 aaPredicted RBP17.5■□□□□ 0.39
RTN3-201ENST00000338850 PBRM1Q86U86 1689 aa17.5■□□□□ 0.39
RTN3-201ENST00000338850 WRNQ14191 1432 aaPredicted RBP eCLIP17.49■□□□□ 0.39
RTN3-201ENST00000338850 TOP2BQ02880 1626 aa17.47■□□□□ 0.39
RTN3-201ENST00000338850 HRCP23327 699 aa17.47■□□□□ 0.39
RTN3-201ENST00000338850 BIVM-ERCC5R4GMW8 1640 aa17.47■□□□□ 0.39
RTN3-201ENST00000338850 GRIN2AQ12879 1464 aa17.37■□□□□ 0.37
RTN3-201ENST00000338850 ADAMTS12P58397 1594 aa17.37■□□□□ 0.37
RTN3-201ENST00000338850 FHAD1B1AJZ9 1412 aa17.33■□□□□ 0.36
RTN3-201ENST00000338850 NUP160Q12769 1436 aa17.33■□□□□ 0.36
RTN3-201ENST00000338850 ERICH3Q5RHP9 1530 aa17.32■□□□□ 0.36
RTN3-201ENST00000338850 CEP170Q5SW79 1584 aa17.31■□□□□ 0.36
RTN3-201ENST00000338850 TRHP20396 242 aaPredicted RBP17.3■□□□□ 0.36
RTN3-201ENST00000338850 ERCC6L2Q5T890 1561 aa17.26■□□□□ 0.35
RTN3-201ENST00000338850 SHROOM2Q13796 1616 aa17.22■□□□□ 0.35
RTN3-201ENST00000338850 TRIM26Q12899 539 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms