RNA–Protein interactions for RNA: ENST00000337571.8

CAPN3-202, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,271 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-202ENST00000337571 NISCHQ9Y2I1 1504 aa26.34■■□□□ 1.81
CAPN3-202ENST00000337571 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
CAPN3-202ENST00000337571 CHIC1Q5VXU3 224 aa24.19■■□□□ 1.46
CAPN3-202ENST00000337571 CCDC180Q9P1Z9 1646 aa23.61■■□□□ 1.37
CAPN3-202ENST00000337571 ABCC9O60706 1549 aa23.55■■□□□ 1.36
CAPN3-202ENST00000337571 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
CAPN3-202ENST00000337571 DCAF8L2P0C7V8 631 aa22.38■■□□□ 1.17
CAPN3-202ENST00000337571 NACADO15069 1562 aa22.33■■□□□ 1.16
CAPN3-202ENST00000337571 DNAJC5BQ9UF47 199 aa22.01■■□□□ 1.11
CAPN3-202ENST00000337571 MYO15BQ96JP2 1530 aa22■■□□□ 1.11
CAPN3-202ENST00000337571 PABPN1Q86U42 306 aaKnown RBP eCLIP21.98■■□□□ 1.11
CAPN3-202ENST00000337571 UNC13AQ9UPW8 1703 aa21.92■■□□□ 1.1
CAPN3-202ENST00000337571 ZCCHC6Q5VYS8 1495 aaKnown RBP21.8■■□□□ 1.08
CAPN3-202ENST00000337571 DCAF1Q9Y4B6 1507 aa21.75■■□□□ 1.07
CAPN3-202ENST00000337571 BICRAQ9NZM4 1560 aa21.73■■□□□ 1.07
CAPN3-202ENST00000337571 SCRIBQ14160 1630 aa21.52■■□□□ 1.04
CAPN3-202ENST00000337571 SHROOM4Q9ULL8 1493 aa21.48■■□□□ 1.03
CAPN3-202ENST00000337571 PHF23Q9BUL5 403 aaPredicted RBP21.28■■□□□ 1
CAPN3-202ENST00000337571 CC2D2AQ9P2K1 1620 aa21.27■■□□□ 1
CAPN3-202ENST00000337571 SENP3Q9H4L4 574 aaPredicted RBP21.26■□□□□ 0.99
CAPN3-202ENST00000337571 EIF4G1Q04637 1599 aaKnown RBP21.23■□□□□ 0.99
CAPN3-202ENST00000337571 CECR2Q9BXF3 1484 aa21.21■□□□□ 0.99
CAPN3-202ENST00000337571 NCAPD3P42695 1498 aa20.59■□□□□ 0.89
CAPN3-202ENST00000337571 ATAD2BQ9ULI0 1458 aa20.53■□□□□ 0.88
CAPN3-202ENST00000337571 SMARCA4P51532 1647 aa20.53■□□□□ 0.88
CAPN3-202ENST00000337571 SMARCA2P51531 1590 aa20.51■□□□□ 0.87
CAPN3-202ENST00000337571 BAZ1AQ9NRL2 1556 aaPredicted RBP20.46■□□□□ 0.87
CAPN3-202ENST00000337571 HMGXB3Q12766 1538 aa20.43■□□□□ 0.86
CAPN3-202ENST00000337571 ERCC6Q03468 1493 aa20.38■□□□□ 0.85
CAPN3-202ENST00000337571 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
CAPN3-202ENST00000337571 PEG3Q9GZU2 1588 aa20.3■□□□□ 0.84
CAPN3-202ENST00000337571 MROH2BQ7Z745 1585 aa20.28■□□□□ 0.84
CAPN3-202ENST00000337571 CUX2O14529 1486 aa20.26■□□□□ 0.83
CAPN3-202ENST00000337571 NESP48681 1621 aa20.22■□□□□ 0.83
CAPN3-202ENST00000337571 DNAJC5Q9H3Z4 198 aa20.21■□□□□ 0.83
CAPN3-202ENST00000337571 LAMC3Q9Y6N6 1575 aa20.14■□□□□ 0.81
CAPN3-202ENST00000337571 WIZO95785 1651 aa20.07■□□□□ 0.8
CAPN3-202ENST00000337571 PDS5BQ9NTI5 1447 aa20.06■□□□□ 0.8
CAPN3-202ENST00000337571 CADPSQ9ULU8 1353 aa19.99■□□□□ 0.79
CAPN3-202ENST00000337571 KIF21AQ7Z4S6 1674 aa19.98■□□□□ 0.79
CAPN3-202ENST00000337571 THOC2Q8NI27 1593 aaKnown RBP19.97■□□□□ 0.79
CAPN3-202ENST00000337571 RSF1Q96T23 1441 aaPredicted RBP19.91■□□□□ 0.78
CAPN3-202ENST00000337571 MRC2Q9UBG0 1479 aa19.82■□□□□ 0.76
CAPN3-202ENST00000337571 TOP2AP11388 1531 aaKnown RBP19.81■□□□□ 0.76
CAPN3-202ENST00000337571 FOXD1Q16676 465 aa19.79■□□□□ 0.76
CAPN3-202ENST00000337571 CEP164Q9UPV0 1460 aa19.78■□□□□ 0.76
CAPN3-202ENST00000337571 FANCD2Q9BXW9 1451 aa19.76■□□□□ 0.75
CAPN3-202ENST00000337571 CFTRP13569 1480 aa19.75■□□□□ 0.75
CAPN3-202ENST00000337571 WDR62O43379 1518 aa19.75■□□□□ 0.75
CAPN3-202ENST00000337571 CCDC88BA6NC98 1476 aa19.6■□□□□ 0.73
CAPN3-202ENST00000337571 PRDM2Q13029 1718 aa19.58■□□□□ 0.72
CAPN3-202ENST00000337571 URB2Q14146 1524 aaKnown RBP19.56■□□□□ 0.72
CAPN3-202ENST00000337571 PLPPR3Q6T4P5 718 aa19.53■□□□□ 0.72
CAPN3-202ENST00000337571 OSCARQ8IYS5 282 aa19.45■□□□□ 0.7
CAPN3-202ENST00000337571 ABCC8Q09428 1581 aa19.41■□□□□ 0.7
CAPN3-202ENST00000337571 TRIM41Q8WV44 630 aa19.41■□□□□ 0.7
CAPN3-202ENST00000337571 IFT140Q96RY7 1462 aa19.38■□□□□ 0.69
CAPN3-202ENST00000337571 TOPBP1Q92547 1522 aa19.37■□□□□ 0.69
CAPN3-202ENST00000337571 DNMBPQ6XZF7 1577 aa19.32■□□□□ 0.68
CAPN3-202ENST00000337571 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
CAPN3-202ENST00000337571 SUPT5HO00267 1087 aaKnown RBP19.21■□□□□ 0.67
CAPN3-202ENST00000337571 EIF4G3O43432 1585 aaKnown RBP19.2■□□□□ 0.66
CAPN3-202ENST00000337571 TARBP1Q13395 1621 aaKnown RBP19.18■□□□□ 0.66
CAPN3-202ENST00000337571 AQRO60306 1485 aaKnown RBP eCLIP19.18■□□□□ 0.66
CAPN3-202ENST00000337571 POLA1P09884 1462 aaPredicted RBP19.17■□□□□ 0.66
CAPN3-202ENST00000337571 SOGA1O94964 1423 aa19.16■□□□□ 0.66
CAPN3-202ENST00000337571 FBLN2P98095 1184 aa19.15■□□□□ 0.66
CAPN3-202ENST00000337571 RAD54L2Q9Y4B4 1467 aa19.11■□□□□ 0.65
CAPN3-202ENST00000337571 RIMBP3CA6NJZ7 1639 aa19.09■□□□□ 0.65
CAPN3-202ENST00000337571 RIMBP3BA6NNM3 1639 aa19.09■□□□□ 0.65
CAPN3-202ENST00000337571 RIMBP3Q9UFD9 1639 aa19.09■□□□□ 0.65
CAPN3-202ENST00000337571 TDRD9Q8NDG6 1382 aaKnown RBP19.08■□□□□ 0.65
CAPN3-202ENST00000337571 FGD5Q6ZNL6 1462 aa19.08■□□□□ 0.64
CAPN3-202ENST00000337571 CHD1O14646 1710 aa19.07■□□□□ 0.64
CAPN3-202ENST00000337571 CUX1P39880 1505 aa19.05■□□□□ 0.64
CAPN3-202ENST00000337571 ARHGEF11O15085 1522 aa19.03■□□□□ 0.64
CAPN3-202ENST00000337571 WDR97A6NE52 1622 aa19.02■□□□□ 0.64
CAPN3-202ENST00000337571 CHMP7Q8WUX9 453 aaPredicted RBP19.01■□□□□ 0.63
CAPN3-202ENST00000337571 CYB5RLQ6IPT4 315 aa18.99■□□□□ 0.63
CAPN3-202ENST00000337571 SNAPC4Q5SXM2 1469 aa18.97■□□□□ 0.63
CAPN3-202ENST00000337571 GRIN2BQ13224 1484 aa18.96■□□□□ 0.63
CAPN3-202ENST00000337571 MAGI1Q96QZ7 1491 aaPredicted RBP18.94■□□□□ 0.62
CAPN3-202ENST00000337571 GAPVD1Q14C86 1478 aa18.9■□□□□ 0.62
CAPN3-202ENST00000337571 SYNJ1O43426 1573 aa18.88■□□□□ 0.61
CAPN3-202ENST00000337571 SYNJ2O15056 1496 aa18.87■□□□□ 0.61
CAPN3-202ENST00000337571 PBRM1Q86U86 1689 aa18.87■□□□□ 0.61
CAPN3-202ENST00000337571 PPP6R1Q9UPN7 881 aa18.87■□□□□ 0.61
CAPN3-202ENST00000337571 ABCA10Q8WWZ4 1543 aa18.86■□□□□ 0.61
CAPN3-202ENST00000337571 WRNQ14191 1432 aaPredicted RBP eCLIP18.85■□□□□ 0.61
CAPN3-202ENST00000337571 ADRA2BP18089 450 aa18.84■□□□□ 0.61
CAPN3-202ENST00000337571 ARAP1Q96P48 1450 aa18.82■□□□□ 0.6
CAPN3-202ENST00000337571 CLASP1Q7Z460 1538 aa18.81■□□□□ 0.6
CAPN3-202ENST00000337571 TRHP20396 242 aaPredicted RBP18.81■□□□□ 0.6
CAPN3-202ENST00000337571 ABCA5Q8WWZ7 1642 aa18.8■□□□□ 0.6
CAPN3-202ENST00000337571 TOP2BQ02880 1626 aa18.79■□□□□ 0.6
CAPN3-202ENST00000337571 BIVM-ERCC5R4GMW8 1640 aa18.78■□□□□ 0.6
CAPN3-202ENST00000337571 GRIN2AQ12879 1464 aa18.69■□□□□ 0.58
CAPN3-202ENST00000337571 FHAD1B1AJZ9 1412 aa18.66■□□□□ 0.58
CAPN3-202ENST00000337571 ADAMTS12P58397 1594 aa18.65■□□□□ 0.58
CAPN3-202ENST00000337571 ERICH3Q5RHP9 1530 aa18.64■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms