RNA–Protein interactions for RNA: ENST00000333467.3

APOBEC3B-201, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 3B, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene APOBEC3B, Length 1,533 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC3B-201ENST00000333467 NISCHQ9Y2I1 1504 aa26.86■■□□□ 1.89
APOBEC3B-201ENST00000333467 AEBP2Q6ZN18 517 aaPredicted RBP26.01■■□□□ 1.75
APOBEC3B-201ENST00000333467 CHIC1Q5VXU3 224 aa24.4■■□□□ 1.5
APOBEC3B-201ENST00000333467 CCDC180Q9P1Z9 1646 aa24.13■■□□□ 1.45
APOBEC3B-201ENST00000333467 ABCC9O60706 1549 aa23.69■■□□□ 1.38
APOBEC3B-201ENST00000333467 RB1CC1Q8TDY2 1594 aa22.73■■□□□ 1.23
APOBEC3B-201ENST00000333467 NACADO15069 1562 aa22.63■■□□□ 1.21
APOBEC3B-201ENST00000333467 SENP3Q9H4L4 574 aaPredicted RBP22.43■■□□□ 1.18
APOBEC3B-201ENST00000333467 MYO15BQ96JP2 1530 aa22.39■■□□□ 1.17
APOBEC3B-201ENST00000333467 UNC13AQ9UPW8 1703 aa22.39■■□□□ 1.17
APOBEC3B-201ENST00000333467 DCAF8L2P0C7V8 631 aa22.37■■□□□ 1.17
APOBEC3B-201ENST00000333467 ZCCHC6Q5VYS8 1495 aaKnown RBP22.37■■□□□ 1.17
APOBEC3B-201ENST00000333467 DCAF1Q9Y4B6 1507 aa22.22■■□□□ 1.15
APOBEC3B-201ENST00000333467 BICRAQ9NZM4 1560 aa22.08■■□□□ 1.12
APOBEC3B-201ENST00000333467 PABPN1Q86U42 306 aaKnown RBP eCLIP21.99■■□□□ 1.11
APOBEC3B-201ENST00000333467 PHF23Q9BUL5 403 aaPredicted RBP21.96■■□□□ 1.11
APOBEC3B-201ENST00000333467 SCRIBQ14160 1630 aa21.96■■□□□ 1.11
APOBEC3B-201ENST00000333467 DNAJC5BQ9UF47 199 aa21.84■■□□□ 1.09
APOBEC3B-201ENST00000333467 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
APOBEC3B-201ENST00000333467 EIF4G1Q04637 1599 aaKnown RBP21.51■■□□□ 1.03
APOBEC3B-201ENST00000333467 POTEDQ86YR6 584 aa21.49■■□□□ 1.03
APOBEC3B-201ENST00000333467 CC2D2AQ9P2K1 1620 aa21.48■■□□□ 1.03
APOBEC3B-201ENST00000333467 CECR2Q9BXF3 1484 aa21.3■■□□□ 1
APOBEC3B-201ENST00000333467 SMARCA4P51532 1647 aa20.97■□□□□ 0.95
APOBEC3B-201ENST00000333467 FOXD1Q16676 465 aa20.96■□□□□ 0.95
APOBEC3B-201ENST00000333467 BAZ1AQ9NRL2 1556 aaPredicted RBP20.87■□□□□ 0.93
APOBEC3B-201ENST00000333467 SMARCA2P51531 1590 aa20.83■□□□□ 0.92
APOBEC3B-201ENST00000333467 ATAD2BQ9ULI0 1458 aa20.81■□□□□ 0.92
APOBEC3B-201ENST00000333467 NCAPD3P42695 1498 aa20.81■□□□□ 0.92
APOBEC3B-201ENST00000333467 HMGXB3Q12766 1538 aa20.8■□□□□ 0.92
APOBEC3B-201ENST00000333467 PEG3Q9GZU2 1588 aa20.74■□□□□ 0.91
APOBEC3B-201ENST00000333467 MROH2BQ7Z745 1585 aa20.71■□□□□ 0.91
APOBEC3B-201ENST00000333467 BAZ1BQ9UIG0 1483 aaKnown RBP20.67■□□□□ 0.9
APOBEC3B-201ENST00000333467 WIZO95785 1651 aa20.54■□□□□ 0.88
APOBEC3B-201ENST00000333467 NESP48681 1621 aa20.45■□□□□ 0.86
APOBEC3B-201ENST00000333467 ERCC6Q03468 1493 aa20.44■□□□□ 0.86
APOBEC3B-201ENST00000333467 LAMC3Q9Y6N6 1575 aa20.4■□□□□ 0.86
APOBEC3B-201ENST00000333467 KIF21AQ7Z4S6 1674 aa20.34■□□□□ 0.85
APOBEC3B-201ENST00000333467 RSF1Q96T23 1441 aaPredicted RBP20.33■□□□□ 0.85
APOBEC3B-201ENST00000333467 CUX2O14529 1486 aa20.31■□□□□ 0.84
APOBEC3B-201ENST00000333467 THOC2Q8NI27 1593 aaKnown RBP20.29■□□□□ 0.84
APOBEC3B-201ENST00000333467 TOP2AP11388 1531 aaKnown RBP20.29■□□□□ 0.84
APOBEC3B-201ENST00000333467 CADPSQ9ULU8 1353 aa20.16■□□□□ 0.82
APOBEC3B-201ENST00000333467 PDS5BQ9NTI5 1447 aa20.16■□□□□ 0.82
APOBEC3B-201ENST00000333467 PRDM2Q13029 1718 aa20.13■□□□□ 0.81
APOBEC3B-201ENST00000333467 MSH5O43196 834 aa20.11■□□□□ 0.81
APOBEC3B-201ENST00000333467 CFTRP13569 1480 aa20.05■□□□□ 0.8
APOBEC3B-201ENST00000333467 MRC2Q9UBG0 1479 aa20.04■□□□□ 0.8
APOBEC3B-201ENST00000333467 WDR62O43379 1518 aa20.03■□□□□ 0.8
APOBEC3B-201ENST00000333467 CEP164Q9UPV0 1460 aa20.03■□□□□ 0.8
APOBEC3B-201ENST00000333467 FANCD2Q9BXW9 1451 aa20■□□□□ 0.79
APOBEC3B-201ENST00000333467 CCDC88BA6NC98 1476 aa19.96■□□□□ 0.79
APOBEC3B-201ENST00000333467 URB2Q14146 1524 aaKnown RBP19.84■□□□□ 0.77
APOBEC3B-201ENST00000333467 DNAJC5Q9H3Z4 198 aa19.82■□□□□ 0.76
APOBEC3B-201ENST00000333467 TOPBP1Q92547 1522 aa19.68■□□□□ 0.74
APOBEC3B-201ENST00000333467 DNMBPQ6XZF7 1577 aa19.68■□□□□ 0.74
APOBEC3B-201ENST00000333467 ABCC8Q09428 1581 aa19.61■□□□□ 0.73
APOBEC3B-201ENST00000333467 IFT140Q96RY7 1462 aa19.58■□□□□ 0.72
APOBEC3B-201ENST00000333467 EIF4G3O43432 1585 aaKnown RBP19.56■□□□□ 0.72
APOBEC3B-201ENST00000333467 SUPT5HO00267 1087 aaKnown RBP19.56■□□□□ 0.72
APOBEC3B-201ENST00000333467 ZNF608Q9ULD9 1512 aaPredicted RBP19.54■□□□□ 0.72
APOBEC3B-201ENST00000333467 TARBP1Q13395 1621 aaKnown RBP19.54■□□□□ 0.72
APOBEC3B-201ENST00000333467 POLA1P09884 1462 aaPredicted RBP19.49■□□□□ 0.71
APOBEC3B-201ENST00000333467 CUX1P39880 1505 aa19.46■□□□□ 0.71
APOBEC3B-201ENST00000333467 FGD5Q6ZNL6 1462 aa19.42■□□□□ 0.7
APOBEC3B-201ENST00000333467 WDR97A6NE52 1622 aa19.42■□□□□ 0.7
APOBEC3B-201ENST00000333467 CHD1O14646 1710 aa19.4■□□□□ 0.7
APOBEC3B-201ENST00000333467 PIAS4Q8N2W9 510 aaPredicted RBP19.39■□□□□ 0.69
APOBEC3B-201ENST00000333467 RAD54L2Q9Y4B4 1467 aa19.38■□□□□ 0.69
APOBEC3B-201ENST00000333467 AQRO60306 1485 aaKnown RBP eCLIP19.35■□□□□ 0.69
APOBEC3B-201ENST00000333467 SOGA1O94964 1423 aa19.32■□□□□ 0.68
APOBEC3B-201ENST00000333467 PBRM1Q86U86 1689 aa19.31■□□□□ 0.68
APOBEC3B-201ENST00000333467 BIVM-ERCC5R4GMW8 1640 aa19.31■□□□□ 0.68
APOBEC3B-201ENST00000333467 OSCARQ8IYS5 282 aa19.28■□□□□ 0.68
APOBEC3B-201ENST00000333467 SYNJ1O43426 1573 aa19.26■□□□□ 0.67
APOBEC3B-201ENST00000333467 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
APOBEC3B-201ENST00000333467 TDRD9Q8NDG6 1382 aaKnown RBP19.25■□□□□ 0.67
APOBEC3B-201ENST00000333467 ABCA5Q8WWZ7 1642 aa19.25■□□□□ 0.67
APOBEC3B-201ENST00000333467 SNAPC4Q5SXM2 1469 aa19.23■□□□□ 0.67
APOBEC3B-201ENST00000333467 RIMBP3CA6NJZ7 1639 aa19.22■□□□□ 0.67
APOBEC3B-201ENST00000333467 RIMBP3BA6NNM3 1639 aa19.22■□□□□ 0.67
APOBEC3B-201ENST00000333467 RIMBP3Q9UFD9 1639 aa19.22■□□□□ 0.67
APOBEC3B-201ENST00000333467 ABCA10Q8WWZ4 1543 aa19.2■□□□□ 0.66
APOBEC3B-201ENST00000333467 WRNQ14191 1432 aaPredicted RBP eCLIP19.19■□□□□ 0.66
APOBEC3B-201ENST00000333467 GRIN2BQ13224 1484 aa19.18■□□□□ 0.66
APOBEC3B-201ENST00000333467 MAGI1Q96QZ7 1491 aaPredicted RBP19.18■□□□□ 0.66
APOBEC3B-201ENST00000333467 GAPVD1Q14C86 1478 aa19.15■□□□□ 0.66
APOBEC3B-201ENST00000333467 ARHGEF11O15085 1522 aa19.15■□□□□ 0.66
APOBEC3B-201ENST00000333467 TRIM41Q8WV44 630 aa19.11■□□□□ 0.65
APOBEC3B-201ENST00000333467 SYNJ2O15056 1496 aa19.1■□□□□ 0.65
APOBEC3B-201ENST00000333467 CLASP1Q7Z460 1538 aa19.09■□□□□ 0.65
APOBEC3B-201ENST00000333467 FBLN2P98095 1184 aa19.09■□□□□ 0.65
APOBEC3B-201ENST00000333467 ADAMTS12P58397 1594 aa19.08■□□□□ 0.64
APOBEC3B-201ENST00000333467 CHMP7Q8WUX9 453 aaPredicted RBP19■□□□□ 0.63
APOBEC3B-201ENST00000333467 ERICH3Q5RHP9 1530 aa18.99■□□□□ 0.63
APOBEC3B-201ENST00000333467 GRIN2AQ12879 1464 aa18.96■□□□□ 0.63
APOBEC3B-201ENST00000333467 ARAP1Q96P48 1450 aa18.96■□□□□ 0.63
APOBEC3B-201ENST00000333467 CEP170Q5SW79 1584 aa18.93■□□□□ 0.62
APOBEC3B-201ENST00000333467 FHAD1B1AJZ9 1412 aa18.9■□□□□ 0.62
APOBEC3B-201ENST00000333467 NUP160Q12769 1436 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms