RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 NISCHQ9Y2I1 1504 aa23.96■■□□□ 1.43
VIPAS39-201ENST00000327028 CCDC180Q9P1Z9 1646 aa21.1■□□□□ 0.97
VIPAS39-201ENST00000327028 ZCCHC6Q5VYS8 1495 aaKnown RBP20.09■□□□□ 0.81
VIPAS39-201ENST00000327028 ABCC9O60706 1549 aa20.08■□□□□ 0.8
VIPAS39-201ENST00000327028 DCAF1Q9Y4B6 1507 aa19.86■□□□□ 0.77
VIPAS39-201ENST00000327028 MYO15BQ96JP2 1530 aa19.74■□□□□ 0.75
VIPAS39-201ENST00000327028 DCAF8L2P0C7V8 631 aa19.71■□□□□ 0.75
VIPAS39-201ENST00000327028 NACADO15069 1562 aa19.68■□□□□ 0.74
VIPAS39-201ENST00000327028 RB1CC1Q8TDY2 1594 aa19.57■□□□□ 0.72
VIPAS39-201ENST00000327028 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
VIPAS39-201ENST00000327028 SHROOM4Q9ULL8 1493 aa19.22■□□□□ 0.67
VIPAS39-201ENST00000327028 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
VIPAS39-201ENST00000327028 BICRAQ9NZM4 1560 aa18.97■□□□□ 0.63
VIPAS39-201ENST00000327028 PABPN1Q86U42 306 aaKnown RBP eCLIP18.82■□□□□ 0.6
VIPAS39-201ENST00000327028 CECR2Q9BXF3 1484 aa18.59■□□□□ 0.57
VIPAS39-201ENST00000327028 BAZ1AQ9NRL2 1556 aaPredicted RBP18.54■□□□□ 0.56
VIPAS39-201ENST00000327028 SMARCA4P51532 1647 aa18.49■□□□□ 0.55
VIPAS39-201ENST00000327028 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
VIPAS39-201ENST00000327028 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
VIPAS39-201ENST00000327028 EIF4G1Q04637 1599 aaKnown RBP18.42■□□□□ 0.54
VIPAS39-201ENST00000327028 SUPT5HO00267 1087 aaKnown RBP18.33■□□□□ 0.52
VIPAS39-201ENST00000327028 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
VIPAS39-201ENST00000327028 WIZO95785 1651 aa18.31■□□□□ 0.52
VIPAS39-201ENST00000327028 SMARCA2P51531 1590 aa18.25■□□□□ 0.51
VIPAS39-201ENST00000327028 ATAD2BQ9ULI0 1458 aa18.23■□□□□ 0.51
VIPAS39-201ENST00000327028 CC2D2AQ9P2K1 1620 aa18.21■□□□□ 0.51
VIPAS39-201ENST00000327028 TOP2AP11388 1531 aaKnown RBP18.16■□□□□ 0.5
VIPAS39-201ENST00000327028 NCAPD3P42695 1498 aa18.13■□□□□ 0.49
VIPAS39-201ENST00000327028 HMGXB3Q12766 1538 aa18.13■□□□□ 0.49
VIPAS39-201ENST00000327028 BAZ1BQ9UIG0 1483 aaKnown RBP18.12■□□□□ 0.49
VIPAS39-201ENST00000327028 CCDC88BA6NC98 1476 aa17.91■□□□□ 0.46
VIPAS39-201ENST00000327028 DNAJC5BQ9UF47 199 aa17.89■□□□□ 0.46
VIPAS39-201ENST00000327028 CFTRP13569 1480 aa17.65■□□□□ 0.42
VIPAS39-201ENST00000327028 CADPSQ9ULU8 1353 aa17.62■□□□□ 0.41
VIPAS39-201ENST00000327028 PRDM2Q13029 1718 aa17.62■□□□□ 0.41
VIPAS39-201ENST00000327028 LAMC3Q9Y6N6 1575 aa17.59■□□□□ 0.41
VIPAS39-201ENST00000327028 NESP48681 1621 aa17.54■□□□□ 0.4
VIPAS39-201ENST00000327028 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
VIPAS39-201ENST00000327028 CHIC1Q5VXU3 224 aa17.43■□□□□ 0.38
VIPAS39-201ENST00000327028 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
VIPAS39-201ENST00000327028 PDS5BQ9NTI5 1447 aa17.42■□□□□ 0.38
VIPAS39-201ENST00000327028 KIF21AQ7Z4S6 1674 aa17.38■□□□□ 0.37
VIPAS39-201ENST00000327028 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
VIPAS39-201ENST00000327028 WRNQ14191 1432 aaPredicted RBP eCLIP17.37■□□□□ 0.37
VIPAS39-201ENST00000327028 SYNJ1O43426 1573 aa17.33■□□□□ 0.37
VIPAS39-201ENST00000327028 BIVM-ERCC5R4GMW8 1640 aa17.31■□□□□ 0.36
VIPAS39-201ENST00000327028 TOP2BQ02880 1626 aa17.31■□□□□ 0.36
VIPAS39-201ENST00000327028 CUX1P39880 1505 aa17.3■□□□□ 0.36
VIPAS39-201ENST00000327028 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
VIPAS39-201ENST00000327028 DNMBPQ6XZF7 1577 aa17.27■□□□□ 0.36
VIPAS39-201ENST00000327028 ERCC6Q03468 1493 aa17.26■□□□□ 0.35
VIPAS39-201ENST00000327028 MRC2Q9UBG0 1479 aa17.24■□□□□ 0.35
VIPAS39-201ENST00000327028 URB2Q14146 1524 aaKnown RBP17.24■□□□□ 0.35
VIPAS39-201ENST00000327028 TOPBP1Q92547 1522 aa17.23■□□□□ 0.35
VIPAS39-201ENST00000327028 THOC2Q8NI27 1593 aaKnown RBP17.2■□□□□ 0.34
VIPAS39-201ENST00000327028 WDR62O43379 1518 aa17.18■□□□□ 0.34
VIPAS39-201ENST00000327028 FGD5Q6ZNL6 1462 aa17.15■□□□□ 0.34
VIPAS39-201ENST00000327028 POLA1P09884 1462 aaPredicted RBP17.12■□□□□ 0.33
VIPAS39-201ENST00000327028 WDR97A6NE52 1622 aa17.03■□□□□ 0.32
VIPAS39-201ENST00000327028 SOGA1O94964 1423 aa17.03■□□□□ 0.32
VIPAS39-201ENST00000327028 RAD54L2Q9Y4B4 1467 aa17.02■□□□□ 0.32
VIPAS39-201ENST00000327028 TARBP1Q13395 1621 aaKnown RBP17.02■□□□□ 0.32
VIPAS39-201ENST00000327028 CUX2O14529 1486 aa17.02■□□□□ 0.31
VIPAS39-201ENST00000327028 ABCA10Q8WWZ4 1543 aa17.02■□□□□ 0.31
VIPAS39-201ENST00000327028 EEA1Q15075 1411 aa17.01■□□□□ 0.31
VIPAS39-201ENST00000327028 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
VIPAS39-201ENST00000327028 RUSC2Q8N2Y8 1516 aa16.97■□□□□ 0.31
VIPAS39-201ENST00000327028 KIF27Q86VH2 1401 aa16.96■□□□□ 0.31
VIPAS39-201ENST00000327028 ABCA5Q8WWZ7 1642 aa16.93■□□□□ 0.3
VIPAS39-201ENST00000327028 FAM9AQ8IZU1 332 aaPredicted RBP16.91■□□□□ 0.3
VIPAS39-201ENST00000327028 CSRNP3Q8WYN3 585 aa16.86■□□□□ 0.29
VIPAS39-201ENST00000327028 TDRD9Q8NDG6 1382 aaKnown RBP16.86■□□□□ 0.29
VIPAS39-201ENST00000327028 GAPVD1Q14C86 1478 aa16.86■□□□□ 0.29
VIPAS39-201ENST00000327028 ZNF608Q9ULD9 1512 aaPredicted RBP16.85■□□□□ 0.29
VIPAS39-201ENST00000327028 EIF4G3O43432 1585 aaKnown RBP16.85■□□□□ 0.29
VIPAS39-201ENST00000327028 PBRM1Q86U86 1689 aa16.84■□□□□ 0.29
VIPAS39-201ENST00000327028 ERICH3Q5RHP9 1530 aa16.83■□□□□ 0.28
VIPAS39-201ENST00000327028 KIF21BO75037 1637 aa16.82■□□□□ 0.28
VIPAS39-201ENST00000327028 AQRO60306 1485 aaKnown RBP eCLIP16.81■□□□□ 0.282e-6■■■■■ 28.9
VIPAS39-201ENST00000327028 IGF1RP08069 1367 aa16.81■□□□□ 0.28
VIPAS39-201ENST00000327028 CUL7Q14999 1698 aa16.8■□□□□ 0.28
VIPAS39-201ENST00000327028 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
VIPAS39-201ENST00000327028 PRXQ9BXM0 1461 aa16.79■□□□□ 0.28
VIPAS39-201ENST00000327028 GOLGA3Q08378 1498 aa16.74■□□□□ 0.27
VIPAS39-201ENST00000327028 ADAMTS12P58397 1594 aa16.73■□□□□ 0.27
VIPAS39-201ENST00000327028 CARMIL1Q5VZK9 1371 aa16.73■□□□□ 0.27
VIPAS39-201ENST00000327028 RAPGEF2Q9Y4G8 1499 aa16.71■□□□□ 0.27
VIPAS39-201ENST00000327028 SNAPC4Q5SXM2 1469 aa16.7■□□□□ 0.26
VIPAS39-201ENST00000327028 LOC105371045A0A1W2PR82 267 aa16.69■□□□□ 0.26
VIPAS39-201ENST00000327028 MAGI1Q96QZ7 1491 aaPredicted RBP16.69■□□□□ 0.26
VIPAS39-201ENST00000327028 FHAD1B1AJZ9 1412 aa16.68■□□□□ 0.26
VIPAS39-201ENST00000327028 EHMT2Q96KQ7 1210 aa16.64■□□□□ 0.25
VIPAS39-201ENST00000327028 SYNJ2O15056 1496 aa16.62■□□□□ 0.25
VIPAS39-201ENST00000327028 TNIKQ9UKE5 1360 aa16.61■□□□□ 0.25
VIPAS39-201ENST00000327028 UBTFP17480 764 aaKnown RBP16.59■□□□□ 0.25
VIPAS39-201ENST00000327028 GRIN2AQ12879 1464 aa16.58■□□□□ 0.24
VIPAS39-201ENST00000327028 CTTNBP2Q8WZ74 1663 aa16.57■□□□□ 0.24
VIPAS39-201ENST00000327028 CHD1O14646 1710 aa16.54■□□□□ 0.24
VIPAS39-201ENST00000327028 CHMP7Q8WUX9 453 aaPredicted RBP16.52■□□□□ 0.23
VIPAS39-201ENST00000327028 CEP162Q5TB80 1403 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms