RNA–Protein interactions for RNA: ENST00000309246.9

TPT1-201, Transcript of tumor protein, translationally-controlled 1, humanhuman

TSL 1 (best) BASIC

Gene TPT1, Length 1,008 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPT1-201ENST00000309246 NISCHQ9Y2I1 1504 aa30.7■■■□□ 2.51
TPT1-201ENST00000309246 AEBP2Q6ZN18 517 aaPredicted RBP27.68■■■□□ 2.02
TPT1-201ENST00000309246 CCDC180Q9P1Z9 1646 aa27.63■■■□□ 2.01
TPT1-201ENST00000309246 ABCC9O60706 1549 aa27.63■■■□□ 2.01
TPT1-201ENST00000309246 CHIC1Q5VXU3 224 aa27.02■■□□□ 1.92
TPT1-201ENST00000309246 RB1CC1Q8TDY2 1594 aa26.29■■□□□ 1.8
TPT1-201ENST00000309246 NACADO15069 1562 aa26.07■■□□□ 1.76
TPT1-201ENST00000309246 DNAJC5BQ9UF47 199 aa25.9■■□□□ 1.74
TPT1-201ENST00000309246 DCAF8L2P0C7V8 631 aa25.89■■□□□ 1.74
TPT1-201ENST00000309246 UNC13AQ9UPW8 1703 aa25.81■■□□□ 1.72
TPT1-201ENST00000309246 PABPN1Q86U42 306 aaKnown RBP eCLIP25.68■■□□□ 1.7
TPT1-201ENST00000309246 MYO15BQ96JP2 1530 aa25.67■■□□□ 1.7
TPT1-201ENST00000309246 BICRAQ9NZM4 1560 aa25.54■■□□□ 1.68
TPT1-201ENST00000309246 ZCCHC6Q5VYS8 1495 aaKnown RBP25.46■■□□□ 1.67
TPT1-201ENST00000309246 DCAF1Q9Y4B6 1507 aa25.34■■□□□ 1.65
TPT1-201ENST00000309246 SCRIBQ14160 1630 aa25.19■■□□□ 1.62
TPT1-201ENST00000309246 SHROOM4Q9ULL8 1493 aa25.13■■□□□ 1.61
TPT1-201ENST00000309246 CC2D2AQ9P2K1 1620 aa24.98■■□□□ 1.59
TPT1-201ENST00000309246 EIF4G1Q04637 1599 aaKnown RBP24.9■■□□□ 1.58
TPT1-201ENST00000309246 CECR2Q9BXF3 1484 aa24.87■■□□□ 1.57
TPT1-201ENST00000309246 NCAPD3P42695 1498 aa24.04■■□□□ 1.44
TPT1-201ENST00000309246 SMARCA4P51532 1647 aa24.01■■□□□ 1.43
TPT1-201ENST00000309246 ATAD2BQ9ULI0 1458 aa23.98■■□□□ 1.43
TPT1-201ENST00000309246 SMARCA2P51531 1590 aa23.93■■□□□ 1.42
TPT1-201ENST00000309246 HMGXB3Q12766 1538 aa23.9■■□□□ 1.42
TPT1-201ENST00000309246 ERCC6Q03468 1493 aa23.85■■□□□ 1.41
TPT1-201ENST00000309246 BAZ1AQ9NRL2 1556 aaPredicted RBP23.85■■□□□ 1.41
TPT1-201ENST00000309246 CUX2O14529 1486 aa23.8■■□□□ 1.4
TPT1-201ENST00000309246 DNAJC5Q9H3Z4 198 aa23.78■■□□□ 1.4
TPT1-201ENST00000309246 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
TPT1-201ENST00000309246 PEG3Q9GZU2 1588 aa23.74■■□□□ 1.39
TPT1-201ENST00000309246 NESP48681 1621 aa23.73■■□□□ 1.39
TPT1-201ENST00000309246 MROH2BQ7Z745 1585 aa23.68■■□□□ 1.38
TPT1-201ENST00000309246 PHF23Q9BUL5 403 aaPredicted RBP23.67■■□□□ 1.38
TPT1-201ENST00000309246 SENP3Q9H4L4 574 aaPredicted RBP23.67■■□□□ 1.38
TPT1-201ENST00000309246 LAMC3Q9Y6N6 1575 aa23.55■■□□□ 1.36
TPT1-201ENST00000309246 THOC2Q8NI27 1593 aaKnown RBP23.53■■□□□ 1.36
TPT1-201ENST00000309246 KIF21AQ7Z4S6 1674 aa23.51■■□□□ 1.35
TPT1-201ENST00000309246 WIZO95785 1651 aa23.44■■□□□ 1.34
TPT1-201ENST00000309246 PDS5BQ9NTI5 1447 aa23.36■■□□□ 1.33
TPT1-201ENST00000309246 CADPSQ9ULU8 1353 aa23.29■■□□□ 1.32
TPT1-201ENST00000309246 MRC2Q9UBG0 1479 aa23.21■■□□□ 1.31
TPT1-201ENST00000309246 WDR62O43379 1518 aa23.17■■□□□ 1.3
TPT1-201ENST00000309246 RSF1Q96T23 1441 aaPredicted RBP23.14■■□□□ 1.29
TPT1-201ENST00000309246 CEP164Q9UPV0 1460 aa23.11■■□□□ 1.29
TPT1-201ENST00000309246 TOP2AP11388 1531 aaKnown RBP23.11■■□□□ 1.29
TPT1-201ENST00000309246 FANCD2Q9BXW9 1451 aa23.07■■□□□ 1.28
TPT1-201ENST00000309246 CFTRP13569 1480 aa23.05■■□□□ 1.28
TPT1-201ENST00000309246 PRDM2Q13029 1718 aa22.96■■□□□ 1.27
TPT1-201ENST00000309246 URB2Q14146 1524 aaKnown RBP22.91■■□□□ 1.26
TPT1-201ENST00000309246 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
TPT1-201ENST00000309246 TRIM41Q8WV44 630 aa22.77■■□□□ 1.24
TPT1-201ENST00000309246 OSCARQ8IYS5 282 aa22.66■■□□□ 1.22
TPT1-201ENST00000309246 TOPBP1Q92547 1522 aa22.65■■□□□ 1.22
TPT1-201ENST00000309246 IFT140Q96RY7 1462 aa22.63■■□□□ 1.21
TPT1-201ENST00000309246 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
TPT1-201ENST00000309246 DNMBPQ6XZF7 1577 aa22.58■■□□□ 1.2
TPT1-201ENST00000309246 ABCC8Q09428 1581 aa22.55■■□□□ 1.2
TPT1-201ENST00000309246 EIF4G3O43432 1585 aaKnown RBP22.55■■□□□ 1.2
TPT1-201ENST00000309246 RIMBP3CA6NJZ7 1639 aa22.48■■□□□ 1.19
TPT1-201ENST00000309246 RIMBP3BA6NNM3 1639 aa22.48■■□□□ 1.19
TPT1-201ENST00000309246 RIMBP3Q9UFD9 1639 aa22.48■■□□□ 1.19
TPT1-201ENST00000309246 TARBP1Q13395 1621 aaKnown RBP22.47■■□□□ 1.19
TPT1-201ENST00000309246 CHD1O14646 1710 aa22.43■■□□□ 1.18
TPT1-201ENST00000309246 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
TPT1-201ENST00000309246 AQRO60306 1485 aaKnown RBP eCLIP22.4■■□□□ 1.183e-9■■■■■ 29.7
TPT1-201ENST00000309246 ARHGEF11O15085 1522 aa22.37■■□□□ 1.17
TPT1-201ENST00000309246 RAD54L2Q9Y4B4 1467 aa22.33■■□□□ 1.16
TPT1-201ENST00000309246 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
TPT1-201ENST00000309246 SOGA1O94964 1423 aa22.27■■□□□ 1.16
TPT1-201ENST00000309246 CUX1P39880 1505 aa22.26■■□□□ 1.15
TPT1-201ENST00000309246 TDRD9Q8NDG6 1382 aaKnown RBP22.24■■□□□ 1.15
TPT1-201ENST00000309246 FBLN2P98095 1184 aa22.23■■□□□ 1.15
TPT1-201ENST00000309246 WDR97A6NE52 1622 aa22.21■■□□□ 1.15
TPT1-201ENST00000309246 SNAPC4Q5SXM2 1469 aa22.19■■□□□ 1.14
TPT1-201ENST00000309246 CYB5RLQ6IPT4 315 aa22.15■■□□□ 1.14
TPT1-201ENST00000309246 ARAP1Q96P48 1450 aa22.15■■□□□ 1.14
TPT1-201ENST00000309246 PBRM1Q86U86 1689 aa22.12■■□□□ 1.13
TPT1-201ENST00000309246 MAGI1Q96QZ7 1491 aaPredicted RBP22.11■■□□□ 1.13
TPT1-201ENST00000309246 CLASP1Q7Z460 1538 aa22.1■■□□□ 1.13
TPT1-201ENST00000309246 GRIN2BQ13224 1484 aa22.09■■□□□ 1.13
TPT1-201ENST00000309246 SUPT5HO00267 1087 aaKnown RBP22.08■■□□□ 1.13
TPT1-201ENST00000309246 SYNJ1O43426 1573 aa22.08■■□□□ 1.12
TPT1-201ENST00000309246 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
TPT1-201ENST00000309246 SYNJ2O15056 1496 aa22.03■■□□□ 1.12
TPT1-201ENST00000309246 GAPVD1Q14C86 1478 aa22.02■■□□□ 1.12
TPT1-201ENST00000309246 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.11
TPT1-201ENST00000309246 ABCA10Q8WWZ4 1543 aa22■■□□□ 1.11
TPT1-201ENST00000309246 PLPPR3Q6T4P5 718 aa21.96■■□□□ 1.11
TPT1-201ENST00000309246 TRHP20396 242 aaPredicted RBP21.93■■□□□ 1.1
TPT1-201ENST00000309246 BIVM-ERCC5R4GMW8 1640 aa21.92■■□□□ 1.1
TPT1-201ENST00000309246 TOP2BQ02880 1626 aa21.89■■□□□ 1.09
TPT1-201ENST00000309246 WRNQ14191 1432 aaPredicted RBP eCLIP21.88■■□□□ 1.09
TPT1-201ENST00000309246 FOXD1Q16676 465 aa21.87■■□□□ 1.09
TPT1-201ENST00000309246 ADAMTS12P58397 1594 aa21.86■■□□□ 1.09
TPT1-201ENST00000309246 GRIN2AQ12879 1464 aa21.83■■□□□ 1.09
TPT1-201ENST00000309246 CEP170Q5SW79 1584 aa21.79■■□□□ 1.08
TPT1-201ENST00000309246 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
TPT1-201ENST00000309246 NUP160Q12769 1436 aa21.74■■□□□ 1.07
TPT1-201ENST00000309246 FHAD1B1AJZ9 1412 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms