RNA–Protein interactions for RNA: ENST00000306006.10

ZNF239-201, Transcript of zinc finger protein 239, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF239, Length 2,389 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF239-201ENST00000306006 NISCHQ9Y2I1 1504 aa21.09■□□□□ 0.97
ZNF239-201ENST00000306006 CCDC180Q9P1Z9 1646 aa18.25■□□□□ 0.51
ZNF239-201ENST00000306006 ZCCHC6Q5VYS8 1495 aaKnown RBP17.74■□□□□ 0.43
ZNF239-201ENST00000306006 DCAF8L2P0C7V8 631 aa17.44■□□□□ 0.38
ZNF239-201ENST00000306006 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
ZNF239-201ENST00000306006 DCAF1Q9Y4B6 1507 aa17.39■□□□□ 0.37
ZNF239-201ENST00000306006 ABCC9O60706 1549 aa17.2■□□□□ 0.34
ZNF239-201ENST00000306006 MYO15BQ96JP2 1530 aa17.1■□□□□ 0.33
ZNF239-201ENST00000306006 NACADO15069 1562 aa16.97■□□□□ 0.31
ZNF239-201ENST00000306006 SCRIBQ14160 1630 aa16.89■□□□□ 0.29
ZNF239-201ENST00000306006 SUPT5HO00267 1087 aaKnown RBP16.84■□□□□ 0.29
ZNF239-201ENST00000306006 RB1CC1Q8TDY2 1594 aa16.79■□□□□ 0.28
ZNF239-201ENST00000306006 UNC13AQ9UPW8 1703 aa16.5■□□□□ 0.23
ZNF239-201ENST00000306006 RSF1Q96T23 1441 aaPredicted RBP16.45■□□□□ 0.22
ZNF239-201ENST00000306006 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
ZNF239-201ENST00000306006 MROH2BQ7Z745 1585 aa16.33■□□□□ 0.2
ZNF239-201ENST00000306006 BICRAQ9NZM4 1560 aa16.33■□□□□ 0.2
ZNF239-201ENST00000306006 PABPN1Q86U42 306 aaKnown RBP eCLIP16.29■□□□□ 0.2
ZNF239-201ENST00000306006 BAZ1AQ9NRL2 1556 aaPredicted RBP16.25■□□□□ 0.19
ZNF239-201ENST00000306006 WIZO95785 1651 aa16.21■□□□□ 0.18
ZNF239-201ENST00000306006 CHIC1Q5VXU3 224 aa16.19■□□□□ 0.18
ZNF239-201ENST00000306006 SMARCA4P51532 1647 aa16.17■□□□□ 0.18
ZNF239-201ENST00000306006 TOP2AP11388 1531 aaKnown RBP16■□□□□ 0.15
ZNF239-201ENST00000306006 PEG3Q9GZU2 1588 aa15.94■□□□□ 0.14
ZNF239-201ENST00000306006 CCDC88BA6NC98 1476 aa15.88■□□□□ 0.13
ZNF239-201ENST00000306006 SMARCA2P51531 1590 aa15.88■□□□□ 0.13
ZNF239-201ENST00000306006 ATAD2BQ9ULI0 1458 aa15.87■□□□□ 0.13
ZNF239-201ENST00000306006 EIF4G1Q04637 1599 aaKnown RBP15.81■□□□□ 0.12
ZNF239-201ENST00000306006 BAZ1BQ9UIG0 1483 aaKnown RBP15.78■□□□□ 0.12
ZNF239-201ENST00000306006 TRIM41Q8WV44 630 aa15.78■□□□□ 0.12
ZNF239-201ENST00000306006 NCAPD3P42695 1498 aa15.68■□□□□ 0.1
ZNF239-201ENST00000306006 HMGXB3Q12766 1538 aa15.66■□□□□ 0.1
ZNF239-201ENST00000306006 LOC105371045A0A1W2PR82 267 aa15.62■□□□□ 0.09
ZNF239-201ENST00000306006 ABCC8Q09428 1581 aa15.62■□□□□ 0.09
ZNF239-201ENST00000306006 FAM9AQ8IZU1 332 aaPredicted RBP15.55■□□□□ 0.08
ZNF239-201ENST00000306006 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
ZNF239-201ENST00000306006 WRNQ14191 1432 aaPredicted RBP eCLIP15.47■□□□□ 0.07
ZNF239-201ENST00000306006 SYNJ1O43426 1573 aa15.41■□□□□ 0.06
ZNF239-201ENST00000306006 CFTRP13569 1480 aa15.4■□□□□ 0.06
ZNF239-201ENST00000306006 SOGA1O94964 1423 aa15.37■□□□□ 0.05
ZNF239-201ENST00000306006 EHMT2Q96KQ7 1210 aa15.36■□□□□ 0.05
ZNF239-201ENST00000306006 RUSC2Q8N2Y8 1516 aa15.32■□□□□ 0.04
ZNF239-201ENST00000306006 CADPSQ9ULU8 1353 aa15.31■□□□□ 0.04
ZNF239-201ENST00000306006 TOP2BQ02880 1626 aa15.3■□□□□ 0.04
ZNF239-201ENST00000306006 EEA1Q15075 1411 aa15.29■□□□□ 0.04
ZNF239-201ENST00000306006 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
ZNF239-201ENST00000306006 BIVM-ERCC5R4GMW8 1640 aa15.27■□□□□ 0.04
ZNF239-201ENST00000306006 CSRNP3Q8WYN3 585 aa15.25■□□□□ 0.03
ZNF239-201ENST00000306006 CUX1P39880 1505 aa15.25■□□□□ 0.03
ZNF239-201ENST00000306006 DNAJC5BQ9UF47 199 aa15.19■□□□□ 0.02
ZNF239-201ENST00000306006 NESP48681 1621 aa15.17■□□□□ 0.02
ZNF239-201ENST00000306006 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
ZNF239-201ENST00000306006 GOLGA3Q08378 1498 aa15.12■□□□□ 0.01
ZNF239-201ENST00000306006 TNIKQ9UKE5 1360 aa15.11■□□□□ 0.01
ZNF239-201ENST00000306006 LAMC3Q9Y6N6 1575 aa15.11■□□□□ 0.01
ZNF239-201ENST00000306006 KIF21BO75037 1637 aa15.1■□□□□ 0.01
ZNF239-201ENST00000306006 CEP164Q9UPV0 1460 aa15.1■□□□□ 0.01
ZNF239-201ENST00000306006 UBTFP17480 764 aaKnown RBP15.09■□□□□ 0.01
ZNF239-201ENST00000306006 PCGF6Q9BYE7 350 aa15.07■□□□□ 0
ZNF239-201ENST00000306006 CEP162Q5TB80 1403 aa15.06■□□□□ 0
ZNF239-201ENST00000306006 FGD5Q6ZNL6 1462 aa15.05■□□□□ -0
ZNF239-201ENST00000306006 KIF27Q86VH2 1401 aa15.04■□□□□ -0
ZNF239-201ENST00000306006 RAPGEF2Q9Y4G8 1499 aa15.04■□□□□ -0
ZNF239-201ENST00000306006 DNMBPQ6XZF7 1577 aa15.02■□□□□ -0
ZNF239-201ENST00000306006 TOPBP1Q92547 1522 aa15□□□□□ -0.01
ZNF239-201ENST00000306006 PRXQ9BXM0 1461 aa15□□□□□ -0.01
ZNF239-201ENST00000306006 PDS5BQ9NTI5 1447 aa15□□□□□ -0.01
ZNF239-201ENST00000306006 CUX2O14529 1486 aa14.99□□□□□ -0.01
ZNF239-201ENST00000306006 TRIM26Q12899 539 aaPredicted RBP14.98□□□□□ -0.01
ZNF239-201ENST00000306006 URB2Q14146 1524 aaKnown RBP14.96□□□□□ -0.01
ZNF239-201ENST00000306006 ERICH3Q5RHP9 1530 aa14.96□□□□□ -0.01
ZNF239-201ENST00000306006 POLA1P09884 1462 aaPredicted RBP14.95□□□□□ -0.02
ZNF239-201ENST00000306006 KIF21AQ7Z4S6 1674 aa14.95□□□□□ -0.02
ZNF239-201ENST00000306006 RAD54L2Q9Y4B4 1467 aa14.93□□□□□ -0.02
ZNF239-201ENST00000306006 IGF1RP08069 1367 aa14.92□□□□□ -0.02
ZNF239-201ENST00000306006 CLIP1P30622 1438 aa14.9□□□□□ -0.02
ZNF239-201ENST00000306006 ABCA10Q8WWZ4 1543 aa14.9□□□□□ -0.02
ZNF239-201ENST00000306006 PPARGC1BQ86YN6 1023 aaKnown RBP14.9□□□□□ -0.02
ZNF239-201ENST00000306006 CARMIL1Q5VZK9 1371 aa14.84□□□□□ -0.03
ZNF239-201ENST00000306006 RANGAP1P46060 587 aaPredicted RBP14.84□□□□□ -0.03
ZNF239-201ENST00000306006 WDR97A6NE52 1622 aa14.83□□□□□ -0.04
ZNF239-201ENST00000306006 MRC2Q9UBG0 1479 aa14.8□□□□□ -0.04
ZNF239-201ENST00000306006 VPS8Q8N3P4 1428 aa14.78□□□□□ -0.04
ZNF239-201ENST00000306006 TDRD9Q8NDG6 1382 aaKnown RBP14.78□□□□□ -0.04
ZNF239-201ENST00000306006 ABCA5Q8WWZ7 1642 aa14.76□□□□□ -0.05
ZNF239-201ENST00000306006 TARBP1Q13395 1621 aaKnown RBP14.76□□□□□ -0.05
ZNF239-201ENST00000306006 HRCP23327 699 aa14.75□□□□□ -0.05
ZNF239-201ENST00000306006 ARAP1Q96P48 1450 aa14.74□□□□□ -0.05
ZNF239-201ENST00000306006 CUL7Q14999 1698 aa14.74□□□□□ -0.05
ZNF239-201ENST00000306006 TTBK1Q5TCY1 1321 aaPredicted RBP14.74□□□□□ -0.05
ZNF239-201ENST00000306006 GAPVD1Q14C86 1478 aa14.73□□□□□ -0.05
ZNF239-201ENST00000306006 WDR62O43379 1518 aa14.71□□□□□ -0.05
ZNF239-201ENST00000306006 ARHGAP35Q9NRY4 1499 aa14.71□□□□□ -0.06
ZNF239-201ENST00000306006 ERCC6Q03468 1493 aa14.7□□□□□ -0.06
ZNF239-201ENST00000306006 AQRO60306 1485 aaKnown RBP eCLIP14.65□□□□□ -0.06
ZNF239-201ENST00000306006 APLP2Q06481 763 aa14.65□□□□□ -0.07
ZNF239-201ENST00000306006 IFT140Q96RY7 1462 aa14.64□□□□□ -0.07
ZNF239-201ENST00000306006 THOC2Q8NI27 1593 aaKnown RBP14.64□□□□□ -0.07
ZNF239-201ENST00000306006 PBRM1Q86U86 1689 aa14.63□□□□□ -0.07
ZNF239-201ENST00000306006 CTTNBP2Q8WZ74 1663 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms