RNA–Protein interactions for RNA: ENST00000302500.4

CLCC1-201, Transcript of chloride channel CLIC like 1, humanhuman

TSL 1 (best) BASIC

Gene CLCC1, Length 1,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCC1-201ENST00000302500 NISCHQ9Y2I1 1504 aa28.25■■■□□ 2.11
CLCC1-201ENST00000302500 CCDC180Q9P1Z9 1646 aa25.24■■□□□ 1.63
CLCC1-201ENST00000302500 ABCC9O60706 1549 aa24.66■■□□□ 1.54
CLCC1-201ENST00000302500 RB1CC1Q8TDY2 1594 aa23.7■■□□□ 1.39
CLCC1-201ENST00000302500 NACADO15069 1562 aa23.7■■□□□ 1.38
CLCC1-201ENST00000302500 MYO15BQ96JP2 1530 aa23.61■■□□□ 1.37
CLCC1-201ENST00000302500 ZCCHC6Q5VYS8 1495 aaKnown RBP23.55■■□□□ 1.36
CLCC1-201ENST00000302500 DCAF1Q9Y4B6 1507 aa23.44■■□□□ 1.34
CLCC1-201ENST00000302500 UNC13AQ9UPW8 1703 aa23.38■■□□□ 1.33
CLCC1-201ENST00000302500 DCAF8L2P0C7V8 631 aa23.22■■□□□ 1.31
CLCC1-201ENST00000302500 BICRAQ9NZM4 1560 aa23.2■■□□□ 1.3
CLCC1-201ENST00000302500 PABPN1Q86U42 306 aaKnown RBP eCLIP22.94■■□□□ 1.26
CLCC1-201ENST00000302500 DNAJC5BQ9UF47 199 aa22.89■■□□□ 1.26
CLCC1-201ENST00000302500 SCRIBQ14160 1630 aa22.88■■□□□ 1.25
CLCC1-201ENST00000302500 SHROOM4Q9ULL8 1493 aa22.84■■□□□ 1.25
CLCC1-201ENST00000302500 EIF4G1Q04637 1599 aaKnown RBP22.47■■□□□ 1.19
CLCC1-201ENST00000302500 CC2D2AQ9P2K1 1620 aa22.4■■□□□ 1.18
CLCC1-201ENST00000302500 CECR2Q9BXF3 1484 aa22.19■■□□□ 1.14
CLCC1-201ENST00000302500 SMARCA4P51532 1647 aa21.96■■□□□ 1.11
CLCC1-201ENST00000302500 NCAPD3P42695 1498 aa21.89■■□□□ 1.1
CLCC1-201ENST00000302500 ATAD2BQ9ULI0 1458 aa21.86■■□□□ 1.09
CLCC1-201ENST00000302500 PEG3Q9GZU2 1588 aa21.86■■□□□ 1.09
CLCC1-201ENST00000302500 BAZ1AQ9NRL2 1556 aaPredicted RBP21.85■■□□□ 1.09
CLCC1-201ENST00000302500 HMGXB3Q12766 1538 aa21.79■■□□□ 1.08
CLCC1-201ENST00000302500 MROH2BQ7Z745 1585 aa21.78■■□□□ 1.08
CLCC1-201ENST00000302500 SMARCA2P51531 1590 aa21.77■■□□□ 1.08
CLCC1-201ENST00000302500 BAZ1BQ9UIG0 1483 aaKnown RBP21.57■■□□□ 1.04
CLCC1-201ENST00000302500 WIZO95785 1651 aa21.53■■□□□ 1.04
CLCC1-201ENST00000302500 RSF1Q96T23 1441 aaPredicted RBP21.45■■□□□ 1.02
CLCC1-201ENST00000302500 NESP48681 1621 aa21.38■■□□□ 1.01
CLCC1-201ENST00000302500 LAMC3Q9Y6N6 1575 aa21.31■■□□□ 1
CLCC1-201ENST00000302500 TOP2AP11388 1531 aaKnown RBP21.28■■□□□ 1
CLCC1-201ENST00000302500 THOC2Q8NI27 1593 aaKnown RBP21.2■□□□□ 0.98
CLCC1-201ENST00000302500 KIF21AQ7Z4S6 1674 aa21.18■□□□□ 0.98
CLCC1-201ENST00000302500 CUX2O14529 1486 aa21.16■□□□□ 0.98
CLCC1-201ENST00000302500 CADPSQ9ULU8 1353 aa21.16■□□□□ 0.98
CLCC1-201ENST00000302500 ERCC6Q03468 1493 aa21.15■□□□□ 0.98
CLCC1-201ENST00000302500 CFTRP13569 1480 aa21.09■□□□□ 0.97
CLCC1-201ENST00000302500 PDS5BQ9NTI5 1447 aa21.04■□□□□ 0.96
CLCC1-201ENST00000302500 CCDC88BA6NC98 1476 aa20.99■□□□□ 0.95
CLCC1-201ENST00000302500 PRDM2Q13029 1718 aa20.98■□□□□ 0.95
CLCC1-201ENST00000302500 AEBP2Q6ZN18 517 aaPredicted RBP20.98■□□□□ 0.95
CLCC1-201ENST00000302500 WDR62O43379 1518 aa20.95■□□□□ 0.94
CLCC1-201ENST00000302500 FANCD2Q9BXW9 1451 aa20.91■□□□□ 0.94
CLCC1-201ENST00000302500 MRC2Q9UBG0 1479 aa20.91■□□□□ 0.94
CLCC1-201ENST00000302500 CEP164Q9UPV0 1460 aa20.87■□□□□ 0.93
CLCC1-201ENST00000302500 URB2Q14146 1524 aaKnown RBP20.8■□□□□ 0.92
CLCC1-201ENST00000302500 CHIC1Q5VXU3 224 aa20.78■□□□□ 0.92
CLCC1-201ENST00000302500 DNAJC5Q9H3Z4 198 aa20.64■□□□□ 0.89
CLCC1-201ENST00000302500 TOPBP1Q92547 1522 aa20.61■□□□□ 0.89
CLCC1-201ENST00000302500 DNMBPQ6XZF7 1577 aa20.57■□□□□ 0.88
CLCC1-201ENST00000302500 ABCC8Q09428 1581 aa20.52■□□□□ 0.88
CLCC1-201ENST00000302500 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
CLCC1-201ENST00000302500 SUPT5HO00267 1087 aaKnown RBP20.47■□□□□ 0.87
CLCC1-201ENST00000302500 IFT140Q96RY7 1462 aa20.46■□□□□ 0.87
CLCC1-201ENST00000302500 ZNF608Q9ULD9 1512 aaPredicted RBP20.45■□□□□ 0.86
CLCC1-201ENST00000302500 POLA1P09884 1462 aaPredicted RBP20.44■□□□□ 0.86
CLCC1-201ENST00000302500 CUX1P39880 1505 aa20.43■□□□□ 0.86
CLCC1-201ENST00000302500 EIF4G3O43432 1585 aaKnown RBP20.38■□□□□ 0.85
CLCC1-201ENST00000302500 WDR97A6NE52 1622 aa20.34■□□□□ 0.85
CLCC1-201ENST00000302500 FGD5Q6ZNL6 1462 aa20.33■□□□□ 0.84
CLCC1-201ENST00000302500 RAD54L2Q9Y4B4 1467 aa20.3■□□□□ 0.84
CLCC1-201ENST00000302500 BIVM-ERCC5R4GMW8 1640 aa20.26■□□□□ 0.83
CLCC1-201ENST00000302500 AQRO60306 1485 aaKnown RBP eCLIP20.25■□□□□ 0.831e-10■■■■■ 41.1
CLCC1-201ENST00000302500 SOGA1O94964 1423 aa20.23■□□□□ 0.83
CLCC1-201ENST00000302500 SYNJ1O43426 1573 aa20.22■□□□□ 0.83
CLCC1-201ENST00000302500 TOP2BQ02880 1626 aa20.22■□□□□ 0.83
CLCC1-201ENST00000302500 ABCA5Q8WWZ7 1642 aa20.17■□□□□ 0.82
CLCC1-201ENST00000302500 ABCA10Q8WWZ4 1543 aa20.16■□□□□ 0.82
CLCC1-201ENST00000302500 CHD1O14646 1710 aa20.16■□□□□ 0.82
CLCC1-201ENST00000302500 TDRD9Q8NDG6 1382 aaKnown RBP20.14■□□□□ 0.81
CLCC1-201ENST00000302500 WRNQ14191 1432 aaPredicted RBP eCLIP20.13■□□□□ 0.81
CLCC1-201ENST00000302500 PBRM1Q86U86 1689 aa20.1■□□□□ 0.81
CLCC1-201ENST00000302500 OSCARQ8IYS5 282 aa20.08■□□□□ 0.81
CLCC1-201ENST00000302500 SNAPC4Q5SXM2 1469 aa20.06■□□□□ 0.8
CLCC1-201ENST00000302500 MAGI1Q96QZ7 1491 aaPredicted RBP20.05■□□□□ 0.8
CLCC1-201ENST00000302500 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
CLCC1-201ENST00000302500 GAPVD1Q14C86 1478 aa20.03■□□□□ 0.8
CLCC1-201ENST00000302500 CLASP1Q7Z460 1538 aa19.99■□□□□ 0.79
CLCC1-201ENST00000302500 RIMBP3CA6NJZ7 1639 aa19.98■□□□□ 0.79
CLCC1-201ENST00000302500 RIMBP3BA6NNM3 1639 aa19.98■□□□□ 0.79
CLCC1-201ENST00000302500 RIMBP3Q9UFD9 1639 aa19.98■□□□□ 0.79
CLCC1-201ENST00000302500 SYNJ2O15056 1496 aa19.97■□□□□ 0.79
CLCC1-201ENST00000302500 ADAMTS12P58397 1594 aa19.94■□□□□ 0.78
CLCC1-201ENST00000302500 ARHGEF11O15085 1522 aa19.94■□□□□ 0.78
CLCC1-201ENST00000302500 ERICH3Q5RHP9 1530 aa19.9■□□□□ 0.78
CLCC1-201ENST00000302500 GRIN2AQ12879 1464 aa19.84■□□□□ 0.77
CLCC1-201ENST00000302500 NUP160Q12769 1436 aa19.82■□□□□ 0.76
CLCC1-201ENST00000302500 CEP170Q5SW79 1584 aa19.82■□□□□ 0.76
CLCC1-201ENST00000302500 ARAP1Q96P48 1450 aa19.8■□□□□ 0.76
CLCC1-201ENST00000302500 FHAD1B1AJZ9 1412 aa19.79■□□□□ 0.76
CLCC1-201ENST00000302500 FBLN2P98095 1184 aa19.76■□□□□ 0.75
CLCC1-201ENST00000302500 CHMP7Q8WUX9 453 aaPredicted RBP19.76■□□□□ 0.75
CLCC1-201ENST00000302500 SHROOM2Q13796 1616 aa19.76■□□□□ 0.75
CLCC1-201ENST00000302500 IGF1RP08069 1367 aa19.71■□□□□ 0.75
CLCC1-201ENST00000302500 ERCC6L2Q5T890 1561 aa19.68■□□□□ 0.74
CLCC1-201ENST00000302500 CUL7Q14999 1698 aa19.68■□□□□ 0.74
CLCC1-201ENST00000302500 RUSC2Q8N2Y8 1516 aa19.68■□□□□ 0.74
CLCC1-201ENST00000302500 KIF27Q86VH2 1401 aa19.67■□□□□ 0.74
CLCC1-201ENST00000302500 TRIM41Q8WV44 630 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms