RNA–Protein interactions for RNA: ENST00000296273.6

RFC4-201, Transcript of replication factor C subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFC4, Length 1,384 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-201ENST00000296273 NISCHQ9Y2I1 1504 aa26.61■■□□□ 1.85
RFC4-201ENST00000296273 ABCC9O60706 1549 aa24.11■■□□□ 1.45
RFC4-201ENST00000296273 CCDC180Q9P1Z9 1646 aa23.99■■□□□ 1.43
RFC4-201ENST00000296273 RB1CC1Q8TDY2 1594 aa22.93■■□□□ 1.26
RFC4-201ENST00000296273 DNAJC5BQ9UF47 199 aa22.76■■□□□ 1.23
RFC4-201ENST00000296273 NACADO15069 1562 aa22.74■■□□□ 1.23
RFC4-201ENST00000296273 DCAF8L2P0C7V8 631 aa22.51■■□□□ 1.19
RFC4-201ENST00000296273 MYO15BQ96JP2 1530 aa22.41■■□□□ 1.18
RFC4-201ENST00000296273 PABPN1Q86U42 306 aaKnown RBP eCLIP22.4■■□□□ 1.18
RFC4-201ENST00000296273 UNC13AQ9UPW8 1703 aa22.33■■□□□ 1.17
RFC4-201ENST00000296273 BICRAQ9NZM4 1560 aa22.22■■□□□ 1.15
RFC4-201ENST00000296273 ZCCHC6Q5VYS8 1495 aaKnown RBP22.03■■□□□ 1.12
RFC4-201ENST00000296273 DCAF1Q9Y4B6 1507 aa22.03■■□□□ 1.12
RFC4-201ENST00000296273 SHROOM4Q9ULL8 1493 aa22.01■■□□□ 1.11
RFC4-201ENST00000296273 CC2D2AQ9P2K1 1620 aa21.79■■□□□ 1.08
RFC4-201ENST00000296273 SCRIBQ14160 1630 aa21.78■■□□□ 1.08
RFC4-201ENST00000296273 CECR2Q9BXF3 1484 aa21.77■■□□□ 1.08
RFC4-201ENST00000296273 EIF4G1Q04637 1599 aaKnown RBP21.72■■□□□ 1.07
RFC4-201ENST00000296273 DNAJC5Q9H3Z4 198 aa21.1■□□□□ 0.97
RFC4-201ENST00000296273 NCAPD3P42695 1498 aa20.99■□□□□ 0.95
RFC4-201ENST00000296273 CUX2O14529 1486 aa20.94■□□□□ 0.94
RFC4-201ENST00000296273 ERCC6Q03468 1493 aa20.87■□□□□ 0.93
RFC4-201ENST00000296273 ATAD2BQ9ULI0 1458 aa20.87■□□□□ 0.93
RFC4-201ENST00000296273 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
RFC4-201ENST00000296273 HMGXB3Q12766 1538 aa20.82■□□□□ 0.92
RFC4-201ENST00000296273 SMARCA4P51532 1647 aa20.8■□□□□ 0.92
RFC4-201ENST00000296273 BAZ1AQ9NRL2 1556 aaPredicted RBP20.7■□□□□ 0.9
RFC4-201ENST00000296273 BAZ1BQ9UIG0 1483 aaKnown RBP20.67■□□□□ 0.9
RFC4-201ENST00000296273 NESP48681 1621 aa20.64■□□□□ 0.89
RFC4-201ENST00000296273 PEG3Q9GZU2 1588 aa20.64■□□□□ 0.89
RFC4-201ENST00000296273 LAMC3Q9Y6N6 1575 aa20.55■□□□□ 0.88
RFC4-201ENST00000296273 AEBP2Q6ZN18 517 aaPredicted RBP20.53■□□□□ 0.88
RFC4-201ENST00000296273 THOC2Q8NI27 1593 aaKnown RBP20.52■□□□□ 0.87
RFC4-201ENST00000296273 MROH2BQ7Z745 1585 aa20.47■□□□□ 0.87
RFC4-201ENST00000296273 PDS5BQ9NTI5 1447 aa20.45■□□□□ 0.86
RFC4-201ENST00000296273 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
RFC4-201ENST00000296273 CADPSQ9ULU8 1353 aa20.34■□□□□ 0.85
RFC4-201ENST00000296273 MRC2Q9UBG0 1479 aa20.25■□□□□ 0.83
RFC4-201ENST00000296273 WDR62O43379 1518 aa20.21■□□□□ 0.83
RFC4-201ENST00000296273 WIZO95785 1651 aa20.21■□□□□ 0.83
RFC4-201ENST00000296273 CEP164Q9UPV0 1460 aa20.14■□□□□ 0.82
RFC4-201ENST00000296273 FANCD2Q9BXW9 1451 aa20.09■□□□□ 0.81
RFC4-201ENST00000296273 CFTRP13569 1480 aa20.06■□□□□ 0.8
RFC4-201ENST00000296273 TRIM41Q8WV44 630 aa20.06■□□□□ 0.8
RFC4-201ENST00000296273 RSF1Q96T23 1441 aaPredicted RBP19.99■□□□□ 0.79
RFC4-201ENST00000296273 TOP2AP11388 1531 aaKnown RBP19.99■□□□□ 0.79
RFC4-201ENST00000296273 OSCARQ8IYS5 282 aa19.94■□□□□ 0.78
RFC4-201ENST00000296273 URB2Q14146 1524 aaKnown RBP19.91■□□□□ 0.78
RFC4-201ENST00000296273 PRDM2Q13029 1718 aa19.82■□□□□ 0.76
RFC4-201ENST00000296273 IFT140Q96RY7 1462 aa19.76■□□□□ 0.75
RFC4-201ENST00000296273 CCDC88BA6NC98 1476 aa19.74■□□□□ 0.75
RFC4-201ENST00000296273 CHIC1Q5VXU3 224 aa19.74■□□□□ 0.75
RFC4-201ENST00000296273 ABCC8Q09428 1581 aa19.7■□□□□ 0.74
RFC4-201ENST00000296273 TOPBP1Q92547 1522 aa19.68■□□□□ 0.74
RFC4-201ENST00000296273 ZNF608Q9ULD9 1512 aaPredicted RBP19.68■□□□□ 0.74
RFC4-201ENST00000296273 RIMBP3CA6NJZ7 1639 aa19.64■□□□□ 0.74
RFC4-201ENST00000296273 RIMBP3BA6NNM3 1639 aa19.64■□□□□ 0.74
RFC4-201ENST00000296273 RIMBP3Q9UFD9 1639 aa19.64■□□□□ 0.74
RFC4-201ENST00000296273 DNMBPQ6XZF7 1577 aa19.61■□□□□ 0.73
RFC4-201ENST00000296273 EIF4G3O43432 1585 aaKnown RBP19.58■□□□□ 0.73
RFC4-201ENST00000296273 ARHGEF11O15085 1522 aa19.58■□□□□ 0.73
RFC4-201ENST00000296273 TARBP1Q13395 1621 aaKnown RBP19.51■□□□□ 0.71
RFC4-201ENST00000296273 AQRO60306 1485 aaKnown RBP eCLIP19.49■□□□□ 0.712e-7■■■■□ 23.4
RFC4-201ENST00000296273 POLA1P09884 1462 aaPredicted RBP19.47■□□□□ 0.71
RFC4-201ENST00000296273 CHD1O14646 1710 aa19.45■□□□□ 0.7
RFC4-201ENST00000296273 CYB5RLQ6IPT4 315 aa19.44■□□□□ 0.7
RFC4-201ENST00000296273 FBLN2P98095 1184 aa19.41■□□□□ 0.7
RFC4-201ENST00000296273 SOGA1O94964 1423 aa19.39■□□□□ 0.69
RFC4-201ENST00000296273 WDR97A6NE52 1622 aa19.37■□□□□ 0.69
RFC4-201ENST00000296273 ARAP1Q96P48 1450 aa19.37■□□□□ 0.69
RFC4-201ENST00000296273 RAD54L2Q9Y4B4 1467 aa19.37■□□□□ 0.69
RFC4-201ENST00000296273 TDRD9Q8NDG6 1382 aaKnown RBP19.34■□□□□ 0.69
RFC4-201ENST00000296273 FGD5Q6ZNL6 1462 aa19.31■□□□□ 0.68
RFC4-201ENST00000296273 TRHP20396 242 aaPredicted RBP19.31■□□□□ 0.68
RFC4-201ENST00000296273 SNAPC4Q5SXM2 1469 aa19.3■□□□□ 0.68
RFC4-201ENST00000296273 MAGI1Q96QZ7 1491 aaPredicted RBP19.29■□□□□ 0.68
RFC4-201ENST00000296273 CHMP7Q8WUX9 453 aaPredicted RBP19.27■□□□□ 0.68
RFC4-201ENST00000296273 SYNJ1O43426 1573 aa19.26■□□□□ 0.67
RFC4-201ENST00000296273 CLASP1Q7Z460 1538 aa19.26■□□□□ 0.67
RFC4-201ENST00000296273 GRIN2BQ13224 1484 aa19.25■□□□□ 0.67
RFC4-201ENST00000296273 CUX1P39880 1505 aa19.25■□□□□ 0.67
RFC4-201ENST00000296273 SYNJ2O15056 1496 aa19.21■□□□□ 0.67
RFC4-201ENST00000296273 GAPVD1Q14C86 1478 aa19.15■□□□□ 0.66
RFC4-201ENST00000296273 PBRM1Q86U86 1689 aa19.13■□□□□ 0.65
RFC4-201ENST00000296273 ABCA10Q8WWZ4 1543 aa19.11■□□□□ 0.65
RFC4-201ENST00000296273 ABCA5Q8WWZ7 1642 aa19.08■□□□□ 0.64
RFC4-201ENST00000296273 WRNQ14191 1432 aaPredicted RBP eCLIP19■□□□□ 0.63
RFC4-201ENST00000296273 GRIN2AQ12879 1464 aa19■□□□□ 0.63
RFC4-201ENST00000296273 NUP160Q12769 1436 aa18.95■□□□□ 0.62
RFC4-201ENST00000296273 ADAMTS12P58397 1594 aa18.95■□□□□ 0.62
RFC4-201ENST00000296273 SUPT5HO00267 1087 aaKnown RBP18.93■□□□□ 0.62
RFC4-201ENST00000296273 FHAD1B1AJZ9 1412 aa18.92■□□□□ 0.62
RFC4-201ENST00000296273 TOP2BQ02880 1626 aa18.92■□□□□ 0.62
RFC4-201ENST00000296273 BIVM-ERCC5R4GMW8 1640 aa18.92■□□□□ 0.62
RFC4-201ENST00000296273 CEP170Q5SW79 1584 aa18.91■□□□□ 0.62
RFC4-201ENST00000296273 ERCC6L2Q5T890 1561 aa18.89■□□□□ 0.62
RFC4-201ENST00000296273 ERICH3Q5RHP9 1530 aa18.88■□□□□ 0.61
RFC4-201ENST00000296273 SHROOM2Q13796 1616 aa18.87■□□□□ 0.61
RFC4-201ENST00000296273 PRG4Q92954 1404 aaPredicted RBP18.76■□□□□ 0.59
RFC4-201ENST00000296273 JPH4Q96JJ6 628 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms