RNA–Protein interactions for RNA: ENST00000294728.6

VCAM1-201, Transcript of vascular cell adhesion molecule 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCAM1, Length 3,083 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAM1-201ENST00000294728 NISCHQ9Y2I1 1504 aa12.95□□□□□ -0.34
VCAM1-201ENST00000294728 ABCC9O60706 1549 aa11.86□□□□□ -0.51
VCAM1-201ENST00000294728 CCDC180Q9P1Z9 1646 aa11.82□□□□□ -0.52
VCAM1-201ENST00000294728 DNAJC5BQ9UF47 199 aa11.32□□□□□ -0.6
VCAM1-201ENST00000294728 RB1CC1Q8TDY2 1594 aa11.3□□□□□ -0.6
VCAM1-201ENST00000294728 NACADO15069 1562 aa11.19□□□□□ -0.62
VCAM1-201ENST00000294728 UNC13AQ9UPW8 1703 aa11.07□□□□□ -0.64
VCAM1-201ENST00000294728 MYO15BQ96JP2 1530 aa11.02□□□□□ -0.64
VCAM1-201ENST00000294728 BICRAQ9NZM4 1560 aa11□□□□□ -0.65
VCAM1-201ENST00000294728 PABPN1Q86U42 306 aaKnown RBP eCLIP10.93□□□□□ -0.66
VCAM1-201ENST00000294728 SHROOM4Q9ULL8 1493 aa10.91□□□□□ -0.66
VCAM1-201ENST00000294728 ZCCHC6Q5VYS8 1495 aaKnown RBP10.89□□□□□ -0.67
VCAM1-201ENST00000294728 CC2D2AQ9P2K1 1620 aa10.78□□□□□ -0.68
VCAM1-201ENST00000294728 DCAF1Q9Y4B6 1507 aa10.77□□□□□ -0.68
VCAM1-201ENST00000294728 DCAF8L2P0C7V8 631 aa10.75□□□□□ -0.69
VCAM1-201ENST00000294728 CECR2Q9BXF3 1484 aa10.75□□□□□ -0.69
VCAM1-201ENST00000294728 EIF4G1Q04637 1599 aaKnown RBP10.71□□□□□ -0.69
VCAM1-201ENST00000294728 SCRIBQ14160 1630 aa10.61□□□□□ -0.71
VCAM1-201ENST00000294728 DNAJC5Q9H3Z4 198 aa10.61□□□□□ -0.71
VCAM1-201ENST00000294728 CUX2O14529 1486 aa10.44□□□□□ -0.74
VCAM1-201ENST00000294728 SUPT5HO00267 1087 aaKnown RBP10.32□□□□□ -0.76
VCAM1-201ENST00000294728 CHIC1Q5VXU3 224 aa10.32□□□□□ -0.76
VCAM1-201ENST00000294728 NCAPD3P42695 1498 aa10.31□□□□□ -0.76
VCAM1-201ENST00000294728 ERCC6Q03468 1493 aa10.25□□□□□ -0.77
VCAM1-201ENST00000294728 HMGXB3Q12766 1538 aa10.24□□□□□ -0.77
VCAM1-201ENST00000294728 ATAD2BQ9ULI0 1458 aa10.21□□□□□ -0.77
VCAM1-201ENST00000294728 SMARCA2P51531 1590 aa10.2□□□□□ -0.78
VCAM1-201ENST00000294728 THOC2Q8NI27 1593 aaKnown RBP10.2□□□□□ -0.78
VCAM1-201ENST00000294728 HRCP23327 699 aa10.2□□□□□ -0.78
VCAM1-201ENST00000294728 SMARCA4P51532 1647 aa10.17□□□□□ -0.78
VCAM1-201ENST00000294728 PEG3Q9GZU2 1588 aa10.14□□□□□ -0.79
VCAM1-201ENST00000294728 NESP48681 1621 aa10.13□□□□□ -0.79
VCAM1-201ENST00000294728 LAMC3Q9Y6N6 1575 aa10.13□□□□□ -0.79
VCAM1-201ENST00000294728 BAZ1AQ9NRL2 1556 aaPredicted RBP10.07□□□□□ -0.8
VCAM1-201ENST00000294728 BAZ1BQ9UIG0 1483 aaKnown RBP10.07□□□□□ -0.8
VCAM1-201ENST00000294728 RSF1Q96T23 1441 aaPredicted RBP10.07□□□□□ -0.8
VCAM1-201ENST00000294728 KIF21AQ7Z4S6 1674 aa10.07□□□□□ -0.8
VCAM1-201ENST00000294728 PDS5BQ9NTI5 1447 aa10.01□□□□□ -0.81
VCAM1-201ENST00000294728 WDR62O43379 1518 aa9.99□□□□□ -0.81
VCAM1-201ENST00000294728 MRC2Q9UBG0 1479 aa9.97□□□□□ -0.81
VCAM1-201ENST00000294728 MROH2BQ7Z745 1585 aa9.94□□□□□ -0.82
VCAM1-201ENST00000294728 TRIM26Q12899 539 aaPredicted RBP9.93□□□□□ -0.82
VCAM1-201ENST00000294728 CADPSQ9ULU8 1353 aa9.93□□□□□ -0.82
VCAM1-201ENST00000294728 TRIM41Q8WV44 630 aa9.91□□□□□ -0.82
VCAM1-201ENST00000294728 PCGF6Q9BYE7 350 aa9.91□□□□□ -0.82
VCAM1-201ENST00000294728 ZEB1P37275 1124 aaPredicted RBP9.89□□□□□ -0.83
VCAM1-201ENST00000294728 CEP164Q9UPV0 1460 aa9.85□□□□□ -0.83
VCAM1-201ENST00000294728 FANCD2Q9BXW9 1451 aa9.82□□□□□ -0.84
VCAM1-201ENST00000294728 WIZO95785 1651 aa9.81□□□□□ -0.84
VCAM1-201ENST00000294728 LOC105371045A0A1W2PR82 267 aa9.81□□□□□ -0.84
VCAM1-201ENST00000294728 CFTRP13569 1480 aa9.8□□□□□ -0.84
VCAM1-201ENST00000294728 OSCARQ8IYS5 282 aa9.79□□□□□ -0.84
VCAM1-201ENST00000294728 RIMBP3CA6NJZ7 1639 aa9.79□□□□□ -0.84
VCAM1-201ENST00000294728 RIMBP3BA6NNM3 1639 aa9.79□□□□□ -0.84
VCAM1-201ENST00000294728 RIMBP3Q9UFD9 1639 aa9.79□□□□□ -0.84
VCAM1-201ENST00000294728 TOP2AP11388 1531 aaKnown RBP9.79□□□□□ -0.84
VCAM1-201ENST00000294728 PRDM2Q13029 1718 aa9.77□□□□□ -0.84
VCAM1-201ENST00000294728 URB2Q14146 1524 aaKnown RBP9.77□□□□□ -0.85
VCAM1-201ENST00000294728 WRNQ14191 1432 aaPredicted RBP eCLIP9.72□□□□□ -0.85
VCAM1-201ENST00000294728 ARHGEF11O15085 1522 aa9.71□□□□□ -0.86
VCAM1-201ENST00000294728 EEA1Q15075 1411 aa9.7□□□□□ -0.86
VCAM1-201ENST00000294728 IFT140Q96RY7 1462 aa9.7□□□□□ -0.86
VCAM1-201ENST00000294728 PPARGC1BQ86YN6 1023 aaKnown RBP9.67□□□□□ -0.86
VCAM1-201ENST00000294728 ZNF608Q9ULD9 1512 aaPredicted RBP9.65□□□□□ -0.87
VCAM1-201ENST00000294728 EIF4G3O43432 1585 aaKnown RBP9.64□□□□□ -0.87
VCAM1-201ENST00000294728 TOPBP1Q92547 1522 aa9.62□□□□□ -0.87
VCAM1-201ENST00000294728 ABCC8Q09428 1581 aa9.62□□□□□ -0.87
VCAM1-201ENST00000294728 CHD1O14646 1710 aa9.62□□□□□ -0.87
VCAM1-201ENST00000294728 CCDC88BA6NC98 1476 aa9.61□□□□□ -0.87
VCAM1-201ENST00000294728 TARBP1Q13395 1621 aaKnown RBP9.6□□□□□ -0.87
VCAM1-201ENST00000294728 ARAP1Q96P48 1450 aa9.6□□□□□ -0.87
VCAM1-201ENST00000294728 DNMBPQ6XZF7 1577 aa9.6□□□□□ -0.87
VCAM1-201ENST00000294728 TNIKQ9UKE5 1360 aa9.59□□□□□ -0.88
VCAM1-201ENST00000294728 PELP1Q8IZL8 1130 aaKnown RBP9.57□□□□□ -0.88
VCAM1-201ENST00000294728 WDR97A6NE52 1622 aa9.56□□□□□ -0.88
VCAM1-201ENST00000294728 KIF21BO75037 1637 aa9.56□□□□□ -0.88
VCAM1-201ENST00000294728 CLASP1Q7Z460 1538 aa9.54□□□□□ -0.88
VCAM1-201ENST00000294728 CYB5RLQ6IPT4 315 aa9.51□□□□□ -0.89
VCAM1-201ENST00000294728 CEP162Q5TB80 1403 aa9.5□□□□□ -0.89
VCAM1-201ENST00000294728 AQRO60306 1485 aaKnown RBP eCLIP9.5□□□□□ -0.89
VCAM1-201ENST00000294728 GOLGA3Q08378 1498 aa9.5□□□□□ -0.89
VCAM1-201ENST00000294728 POLA1P09884 1462 aaPredicted RBP9.49□□□□□ -0.89
VCAM1-201ENST00000294728 SYNJ1O43426 1573 aa9.47□□□□□ -0.89
VCAM1-201ENST00000294728 TRHP20396 242 aaPredicted RBP9.45□□□□□ -0.9
VCAM1-201ENST00000294728 MAGI1Q96QZ7 1491 aaPredicted RBP9.45□□□□□ -0.9
VCAM1-201ENST00000294728 FAM9AQ8IZU1 332 aaPredicted RBP9.44□□□□□ -0.9
VCAM1-201ENST00000294728 BIVM-ERCC5R4GMW8 1640 aa9.44□□□□□ -0.9
VCAM1-201ENST00000294728 SNAPC4Q5SXM2 1469 aa9.44□□□□□ -0.9
VCAM1-201ENST00000294728 SOGA1O94964 1423 aa9.42□□□□□ -0.9
VCAM1-201ENST00000294728 RAD54L2Q9Y4B4 1467 aa9.42□□□□□ -0.9
VCAM1-201ENST00000294728 CSRNP3Q8WYN3 585 aa9.42□□□□□ -0.9
VCAM1-201ENST00000294728 TOP2BQ02880 1626 aa9.41□□□□□ -0.9
VCAM1-201ENST00000294728 ERICH3Q5RHP9 1530 aa9.4□□□□□ -0.9
VCAM1-201ENST00000294728 SYNJ2O15056 1496 aa9.4□□□□□ -0.9
VCAM1-201ENST00000294728 GRIN2BQ13224 1484 aa9.4□□□□□ -0.9
VCAM1-201ENST00000294728 PBRM1Q86U86 1689 aa9.4□□□□□ -0.91
VCAM1-201ENST00000294728 FGD5Q6ZNL6 1462 aa9.39□□□□□ -0.91
VCAM1-201ENST00000294728 TDRD9Q8NDG6 1382 aaKnown RBP9.38□□□□□ -0.91
VCAM1-201ENST00000294728 CUX1P39880 1505 aa9.37□□□□□ -0.91
VCAM1-201ENST00000294728 GAPVD1Q14C86 1478 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms