RNA–Protein interactions for RNA: ENST00000290330.7

SNF8-201, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SNF8, Length 951 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-201ENST00000290330 NISCHQ9Y2I1 1504 aa25.91■■□□□ 1.74
SNF8-201ENST00000290330 CCDC180Q9P1Z9 1646 aa23.1■■□□□ 1.29
SNF8-201ENST00000290330 ABCC9O60706 1549 aa22.96■■□□□ 1.27
SNF8-201ENST00000290330 RB1CC1Q8TDY2 1594 aa21.92■■□□□ 1.1
SNF8-201ENST00000290330 NACADO15069 1562 aa21.83■■□□□ 1.09
SNF8-201ENST00000290330 DCAF8L2P0C7V8 631 aa21.81■■□□□ 1.08
SNF8-201ENST00000290330 MYO15BQ96JP2 1530 aa21.62■■□□□ 1.05
SNF8-201ENST00000290330 ZCCHC6Q5VYS8 1495 aaKnown RBP21.52■■□□□ 1.03
SNF8-201ENST00000290330 PABPN1Q86U42 306 aaKnown RBP eCLIP21.44■■□□□ 1.025e-8■■■□□ 16.1
SNF8-201ENST00000290330 DCAF1Q9Y4B6 1507 aa21.41■■□□□ 1.02
SNF8-201ENST00000290330 DNAJC5BQ9UF47 199 aa21.4■■□□□ 1.02
SNF8-201ENST00000290330 UNC13AQ9UPW8 1703 aa21.38■■□□□ 1.01
SNF8-201ENST00000290330 BICRAQ9NZM4 1560 aa21.28■■□□□ 1
SNF8-201ENST00000290330 SCRIBQ14160 1630 aa21.08■□□□□ 0.97
SNF8-201ENST00000290330 SHROOM4Q9ULL8 1493 aa21.02■□□□□ 0.96
SNF8-201ENST00000290330 EIF4G1Q04637 1599 aaKnown RBP20.75■□□□□ 0.91
SNF8-201ENST00000290330 CC2D2AQ9P2K1 1620 aa20.73■□□□□ 0.91
SNF8-201ENST00000290330 CECR2Q9BXF3 1484 aa20.67■□□□□ 0.9
SNF8-201ENST00000290330 AEBP2Q6ZN18 517 aaPredicted RBP20.3■□□□□ 0.84
SNF8-201ENST00000290330 NCAPD3P42695 1498 aa20.18■□□□□ 0.82
SNF8-201ENST00000290330 ATAD2BQ9ULI0 1458 aa20.15■□□□□ 0.82
SNF8-201ENST00000290330 SMARCA4P51532 1647 aa20.13■□□□□ 0.81
SNF8-201ENST00000290330 BAZ1AQ9NRL2 1556 aaPredicted RBP20.08■□□□□ 0.81
SNF8-201ENST00000290330 SMARCA2P51531 1590 aa20.08■□□□□ 0.8
SNF8-201ENST00000290330 HMGXB3Q12766 1538 aa20.02■□□□□ 0.79
SNF8-201ENST00000290330 MROH2BQ7Z745 1585 aa19.97■□□□□ 0.79
SNF8-201ENST00000290330 PEG3Q9GZU2 1588 aa19.95■□□□□ 0.78
SNF8-201ENST00000290330 BAZ1BQ9UIG0 1483 aaKnown RBP19.94■□□□□ 0.78
SNF8-201ENST00000290330 ERCC6Q03468 1493 aa19.79■□□□□ 0.76
SNF8-201ENST00000290330 NESP48681 1621 aa19.79■□□□□ 0.76
SNF8-201ENST00000290330 WIZO95785 1651 aa19.71■□□□□ 0.75
SNF8-201ENST00000290330 CUX2O14529 1486 aa19.69■□□□□ 0.74
SNF8-201ENST00000290330 LAMC3Q9Y6N6 1575 aa19.66■□□□□ 0.74
SNF8-201ENST00000290330 RSF1Q96T23 1441 aaPredicted RBP19.65■□□□□ 0.74
SNF8-201ENST00000290330 CADPSQ9ULU8 1353 aa19.58■□□□□ 0.73
SNF8-201ENST00000290330 PDS5BQ9NTI5 1447 aa19.56■□□□□ 0.72
SNF8-201ENST00000290330 THOC2Q8NI27 1593 aaKnown RBP19.51■□□□□ 0.71
SNF8-201ENST00000290330 DNAJC5Q9H3Z4 198 aa19.5■□□□□ 0.71
SNF8-201ENST00000290330 TOP2AP11388 1531 aaKnown RBP19.49■□□□□ 0.71
SNF8-201ENST00000290330 KIF21AQ7Z4S6 1674 aa19.48■□□□□ 0.71
SNF8-201ENST00000290330 CFTRP13569 1480 aa19.4■□□□□ 0.7
SNF8-201ENST00000290330 MRC2Q9UBG0 1479 aa19.37■□□□□ 0.69
SNF8-201ENST00000290330 FANCD2Q9BXW9 1451 aa19.35■□□□□ 0.69
SNF8-201ENST00000290330 CEP164Q9UPV0 1460 aa19.34■□□□□ 0.69
SNF8-201ENST00000290330 WDR62O43379 1518 aa19.3■□□□□ 0.68
SNF8-201ENST00000290330 CCDC88BA6NC98 1476 aa19.28■□□□□ 0.68
SNF8-201ENST00000290330 URB2Q14146 1524 aaKnown RBP19.17■□□□□ 0.66
SNF8-201ENST00000290330 PRDM2Q13029 1718 aa19.11■□□□□ 0.65
SNF8-201ENST00000290330 TOPBP1Q92547 1522 aa19■□□□□ 0.63
SNF8-201ENST00000290330 ABCC8Q09428 1581 aa18.98■□□□□ 0.63
SNF8-201ENST00000290330 IFT140Q96RY7 1462 aa18.95■□□□□ 0.62
SNF8-201ENST00000290330 SUPT5HO00267 1087 aaKnown RBP18.94■□□□□ 0.62
SNF8-201ENST00000290330 DNMBPQ6XZF7 1577 aa18.93■□□□□ 0.62
SNF8-201ENST00000290330 ZNF608Q9ULD9 1512 aaPredicted RBP18.91■□□□□ 0.62
SNF8-201ENST00000290330 OSCARQ8IYS5 282 aa18.87■□□□□ 0.61
SNF8-201ENST00000290330 CHIC1Q5VXU3 224 aa18.85■□□□□ 0.61
SNF8-201ENST00000290330 POLA1P09884 1462 aaPredicted RBP18.82■□□□□ 0.6
SNF8-201ENST00000290330 TARBP1Q13395 1621 aaKnown RBP18.79■□□□□ 0.6
SNF8-201ENST00000290330 EIF4G3O43432 1585 aaKnown RBP18.77■□□□□ 0.6
SNF8-201ENST00000290330 AQRO60306 1485 aaKnown RBP eCLIP18.77■□□□□ 0.593e-6■■■□□ 17.8
SNF8-201ENST00000290330 RAD54L2Q9Y4B4 1467 aa18.75■□□□□ 0.59
SNF8-201ENST00000290330 SOGA1O94964 1423 aa18.74■□□□□ 0.59
SNF8-201ENST00000290330 CUX1P39880 1505 aa18.74■□□□□ 0.59
SNF8-201ENST00000290330 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
SNF8-201ENST00000290330 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
SNF8-201ENST00000290330 TRIM41Q8WV44 630 aa18.7■□□□□ 0.58
SNF8-201ENST00000290330 FBLN2P98095 1184 aa18.61■□□□□ 0.57
SNF8-201ENST00000290330 WDR97A6NE52 1622 aa18.6■□□□□ 0.57
SNF8-201ENST00000290330 CHD1O14646 1710 aa18.57■□□□□ 0.56
SNF8-201ENST00000290330 SNAPC4Q5SXM2 1469 aa18.56■□□□□ 0.56
SNF8-201ENST00000290330 GRIN2BQ13224 1484 aa18.55■□□□□ 0.56
SNF8-201ENST00000290330 RIMBP3CA6NJZ7 1639 aa18.54■□□□□ 0.56
SNF8-201ENST00000290330 RIMBP3BA6NNM3 1639 aa18.54■□□□□ 0.56
SNF8-201ENST00000290330 RIMBP3Q9UFD9 1639 aa18.54■□□□□ 0.56
SNF8-201ENST00000290330 ARHGEF11O15085 1522 aa18.54■□□□□ 0.56
SNF8-201ENST00000290330 ABCA10Q8WWZ4 1543 aa18.53■□□□□ 0.56
SNF8-201ENST00000290330 MAGI1Q96QZ7 1491 aaPredicted RBP18.52■□□□□ 0.56
SNF8-201ENST00000290330 WRNQ14191 1432 aaPredicted RBP eCLIP18.52■□□□□ 0.56
SNF8-201ENST00000290330 GAPVD1Q14C86 1478 aa18.52■□□□□ 0.55
SNF8-201ENST00000290330 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
SNF8-201ENST00000290330 TOP2BQ02880 1626 aa18.48■□□□□ 0.55
SNF8-201ENST00000290330 SYNJ1O43426 1573 aa18.47■□□□□ 0.55
SNF8-201ENST00000290330 SYNJ2O15056 1496 aa18.46■□□□□ 0.55
SNF8-201ENST00000290330 BIVM-ERCC5R4GMW8 1640 aa18.46■□□□□ 0.55
SNF8-201ENST00000290330 ABCA5Q8WWZ7 1642 aa18.45■□□□□ 0.54
SNF8-201ENST00000290330 PBRM1Q86U86 1689 aa18.43■□□□□ 0.54
SNF8-201ENST00000290330 CYB5RLQ6IPT4 315 aa18.42■□□□□ 0.54
SNF8-201ENST00000290330 CLASP1Q7Z460 1538 aa18.4■□□□□ 0.54
SNF8-201ENST00000290330 ARAP1Q96P48 1450 aa18.37■□□□□ 0.53
SNF8-201ENST00000290330 GRIN2AQ12879 1464 aa18.31■□□□□ 0.52
SNF8-201ENST00000290330 FHAD1B1AJZ9 1412 aa18.3■□□□□ 0.52
SNF8-201ENST00000290330 ADAMTS12P58397 1594 aa18.3■□□□□ 0.52
SNF8-201ENST00000290330 ERICH3Q5RHP9 1530 aa18.29■□□□□ 0.52
SNF8-201ENST00000290330 NUP160Q12769 1436 aa18.25■□□□□ 0.51
SNF8-201ENST00000290330 CEP170Q5SW79 1584 aa18.22■□□□□ 0.51
SNF8-201ENST00000290330 KIF27Q86VH2 1401 aa18.15■□□□□ 0.5
SNF8-201ENST00000290330 IGF1RP08069 1367 aa18.15■□□□□ 0.5
SNF8-201ENST00000290330 ERCC6L2Q5T890 1561 aa18.13■□□□□ 0.49
SNF8-201ENST00000290330 TRHP20396 242 aaPredicted RBP18.13■□□□□ 0.49
SNF8-201ENST00000290330 SHROOM2Q13796 1616 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms