RNA–Protein interactions for RNA: ENST00000273027.6

CPNE9-201, Transcript of copine family member 9, humanhuman

TSL 3

Gene CPNE9, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE9-201ENST00000273027 NISCHQ9Y2I1 1504 aa21.77■■□□□ 1.08
CPNE9-201ENST00000273027 ABCC9O60706 1549 aa20.13■□□□□ 0.81
CPNE9-201ENST00000273027 CCDC180Q9P1Z9 1646 aa19.7■□□□□ 0.74
CPNE9-201ENST00000273027 DNAJC5BQ9UF47 199 aa19.35■□□□□ 0.69
CPNE9-201ENST00000273027 RB1CC1Q8TDY2 1594 aa18.88■□□□□ 0.61
CPNE9-201ENST00000273027 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
CPNE9-201ENST00000273027 DCAF8L2P0C7V8 631 aa18.72■□□□□ 0.59
CPNE9-201ENST00000273027 NACADO15069 1562 aa18.63■□□□□ 0.57
CPNE9-201ENST00000273027 UNC13AQ9UPW8 1703 aa18.4■□□□□ 0.54
CPNE9-201ENST00000273027 BICRAQ9NZM4 1560 aa18.34■□□□□ 0.53
CPNE9-201ENST00000273027 MYO15BQ96JP2 1530 aa18.33■□□□□ 0.52
CPNE9-201ENST00000273027 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
CPNE9-201ENST00000273027 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
CPNE9-201ENST00000273027 DNAJC5Q9H3Z4 198 aa18.08■□□□□ 0.48
CPNE9-201ENST00000273027 DCAF1Q9Y4B6 1507 aa18.06■□□□□ 0.48
CPNE9-201ENST00000273027 ZCCHC6Q5VYS8 1495 aaKnown RBP18.04■□□□□ 0.48
CPNE9-201ENST00000273027 SHROOM4Q9ULL8 1493 aa17.97■□□□□ 0.47
CPNE9-201ENST00000273027 EIF4G1Q04637 1599 aaKnown RBP17.92■□□□□ 0.46
CPNE9-201ENST00000273027 SCRIBQ14160 1630 aa17.86■□□□□ 0.45
CPNE9-201ENST00000273027 CUX2O14529 1486 aa17.45■□□□□ 0.38
CPNE9-201ENST00000273027 ERCC6Q03468 1493 aa17.41■□□□□ 0.38
CPNE9-201ENST00000273027 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
CPNE9-201ENST00000273027 TRIM41Q8WV44 630 aa17.17■□□□□ 0.34
CPNE9-201ENST00000273027 NESP48681 1621 aa17.15■□□□□ 0.34
CPNE9-201ENST00000273027 ATAD2BQ9ULI0 1458 aa17.12■□□□□ 0.33
CPNE9-201ENST00000273027 SUPT5HO00267 1087 aaKnown RBP17.08■□□□□ 0.32
CPNE9-201ENST00000273027 SMARCA4P51532 1647 aa17.03■□□□□ 0.32
CPNE9-201ENST00000273027 SMARCA2P51531 1590 aa17.02■□□□□ 0.32
CPNE9-201ENST00000273027 HMGXB3Q12766 1538 aa17.01■□□□□ 0.31
CPNE9-201ENST00000273027 THOC2Q8NI27 1593 aaKnown RBP16.95■□□□□ 0.3
CPNE9-201ENST00000273027 BAZ1BQ9UIG0 1483 aaKnown RBP16.94■□□□□ 0.3
CPNE9-201ENST00000273027 BAZ1AQ9NRL2 1556 aaPredicted RBP16.94■□□□□ 0.3
CPNE9-201ENST00000273027 PEG3Q9GZU2 1588 aa16.91■□□□□ 0.3
CPNE9-201ENST00000273027 LAMC3Q9Y6N6 1575 aa16.88■□□□□ 0.29
CPNE9-201ENST00000273027 PDS5BQ9NTI5 1447 aa16.87■□□□□ 0.29
CPNE9-201ENST00000273027 KIF21AQ7Z4S6 1674 aa16.84■□□□□ 0.29
CPNE9-201ENST00000273027 CHIC1Q5VXU3 224 aa16.79■□□□□ 0.28
CPNE9-201ENST00000273027 MROH2BQ7Z745 1585 aa16.74■□□□□ 0.27
CPNE9-201ENST00000273027 CADPSQ9ULU8 1353 aa16.73■□□□□ 0.27
CPNE9-201ENST00000273027 OSCARQ8IYS5 282 aa16.72■□□□□ 0.27
CPNE9-201ENST00000273027 MRC2Q9UBG0 1479 aa16.72■□□□□ 0.27
CPNE9-201ENST00000273027 WDR62O43379 1518 aa16.65■□□□□ 0.26
CPNE9-201ENST00000273027 WIZO95785 1651 aa16.58■□□□□ 0.24
CPNE9-201ENST00000273027 CEP164Q9UPV0 1460 aa16.57■□□□□ 0.24
CPNE9-201ENST00000273027 FANCD2Q9BXW9 1451 aa16.53■□□□□ 0.24
CPNE9-201ENST00000273027 RSF1Q96T23 1441 aaPredicted RBP16.51■□□□□ 0.23
CPNE9-201ENST00000273027 RIMBP3CA6NJZ7 1639 aa16.43■□□□□ 0.22
CPNE9-201ENST00000273027 RIMBP3BA6NNM3 1639 aa16.43■□□□□ 0.22
CPNE9-201ENST00000273027 RIMBP3Q9UFD9 1639 aa16.43■□□□□ 0.22
CPNE9-201ENST00000273027 CFTRP13569 1480 aa16.41■□□□□ 0.22
CPNE9-201ENST00000273027 URB2Q14146 1524 aaKnown RBP16.4■□□□□ 0.22
CPNE9-201ENST00000273027 CYB5RLQ6IPT4 315 aa16.4■□□□□ 0.22
CPNE9-201ENST00000273027 TRHP20396 242 aaPredicted RBP16.38■□□□□ 0.21
CPNE9-201ENST00000273027 PRDM2Q13029 1718 aa16.37■□□□□ 0.21
CPNE9-201ENST00000273027 TOP2AP11388 1531 aaKnown RBP16.37■□□□□ 0.21
CPNE9-201ENST00000273027 ARHGEF11O15085 1522 aa16.34■□□□□ 0.21
CPNE9-201ENST00000273027 ZNF608Q9ULD9 1512 aaPredicted RBP16.3■□□□□ 0.2
CPNE9-201ENST00000273027 HRCP23327 699 aa16.27■□□□□ 0.2
CPNE9-201ENST00000273027 IFT140Q96RY7 1462 aa16.25■□□□□ 0.19
CPNE9-201ENST00000273027 AEBP2Q6ZN18 517 aaPredicted RBP16.24■□□□□ 0.19
CPNE9-201ENST00000273027 FBLN2P98095 1184 aa16.23■□□□□ 0.19
CPNE9-201ENST00000273027 ARAP1Q96P48 1450 aa16.15■□□□□ 0.18
CPNE9-201ENST00000273027 TOPBP1Q92547 1522 aa16.14■□□□□ 0.18
CPNE9-201ENST00000273027 CCDC88BA6NC98 1476 aa16.14■□□□□ 0.17
CPNE9-201ENST00000273027 AQRO60306 1485 aaKnown RBP eCLIP16.14■□□□□ 0.17
CPNE9-201ENST00000273027 EIF4G3O43432 1585 aaKnown RBP16.11■□□□□ 0.17
CPNE9-201ENST00000273027 CHD1O14646 1710 aa16.09■□□□□ 0.17
CPNE9-201ENST00000273027 TRIM26Q12899 539 aaPredicted RBP16.09■□□□□ 0.17
CPNE9-201ENST00000273027 ABCC8Q09428 1581 aa16.08■□□□□ 0.16
CPNE9-201ENST00000273027 PCGF6Q9BYE7 350 aa16.07■□□□□ 0.16
CPNE9-201ENST00000273027 LOC105371045A0A1W2PR82 267 aa16.04■□□□□ 0.16
CPNE9-201ENST00000273027 DNMBPQ6XZF7 1577 aa16.03■□□□□ 0.16
CPNE9-201ENST00000273027 TARBP1Q13395 1621 aaKnown RBP16.01■□□□□ 0.15
CPNE9-201ENST00000273027 TDRD9Q8NDG6 1382 aaKnown RBP16■□□□□ 0.15
CPNE9-201ENST00000273027 CHMP7Q8WUX9 453 aaPredicted RBP15.98■□□□□ 0.15
CPNE9-201ENST00000273027 ZEB1P37275 1124 aaPredicted RBP15.96■□□□□ 0.15
CPNE9-201ENST00000273027 POLA1P09884 1462 aaPredicted RBP15.95■□□□□ 0.14
CPNE9-201ENST00000273027 RAD54L2Q9Y4B4 1467 aa15.95■□□□□ 0.14
CPNE9-201ENST00000273027 SOGA1O94964 1423 aa15.94■□□□□ 0.14
CPNE9-201ENST00000273027 SNAPC4Q5SXM2 1469 aa15.9■□□□□ 0.14
CPNE9-201ENST00000273027 CLASP1Q7Z460 1538 aa15.88■□□□□ 0.13
CPNE9-201ENST00000273027 WDR97A6NE52 1622 aa15.87■□□□□ 0.13
CPNE9-201ENST00000273027 EEA1Q15075 1411 aa15.86■□□□□ 0.13
CPNE9-201ENST00000273027 SYNJ1O43426 1573 aa15.86■□□□□ 0.13
CPNE9-201ENST00000273027 GAPVD1Q14C86 1478 aa15.82■□□□□ 0.12
CPNE9-201ENST00000273027 MAGI1Q96QZ7 1491 aaPredicted RBP15.81■□□□□ 0.12
CPNE9-201ENST00000273027 GRIN2BQ13224 1484 aa15.8■□□□□ 0.12
CPNE9-201ENST00000273027 FGD5Q6ZNL6 1462 aa15.8■□□□□ 0.12
CPNE9-201ENST00000273027 SYNJ2O15056 1496 aa15.78■□□□□ 0.12
CPNE9-201ENST00000273027 CUX1P39880 1505 aa15.75■□□□□ 0.11
CPNE9-201ENST00000273027 PBRM1Q86U86 1689 aa15.71■□□□□ 0.11
CPNE9-201ENST00000273027 WRNQ14191 1432 aaPredicted RBP eCLIP15.69■□□□□ 0.1
CPNE9-201ENST00000273027 FAM9AQ8IZU1 332 aaPredicted RBP15.68■□□□□ 0.1
CPNE9-201ENST00000273027 ERCC6L2Q5T890 1561 aa15.66■□□□□ 0.1
CPNE9-201ENST00000273027 ABCA5Q8WWZ7 1642 aa15.64■□□□□ 0.09
CPNE9-201ENST00000273027 TNIKQ9UKE5 1360 aa15.63■□□□□ 0.09
CPNE9-201ENST00000273027 ABCA10Q8WWZ4 1543 aa15.61■□□□□ 0.09
CPNE9-201ENST00000273027 GRIN2AQ12879 1464 aa15.59■□□□□ 0.09
CPNE9-201ENST00000273027 CEP170Q5SW79 1584 aa15.58■□□□□ 0.08
CPNE9-201ENST00000273027 BIVM-ERCC5R4GMW8 1640 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms