RNA–Protein interactions for RNA: ENST00000271971.6

CAPN9-201, Transcript of calpain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN9, Length 2,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN9-201ENST00000271971 NISCHQ9Y2I1 1504 aa28.5■■■□□ 2.15
CAPN9-201ENST00000271971 CCDC180Q9P1Z9 1646 aa24.88■■□□□ 1.57
CAPN9-201ENST00000271971 ZCCHC6Q5VYS8 1495 aaKnown RBP23.94■■□□□ 1.42
CAPN9-201ENST00000271971 ABCC9O60706 1549 aa23.65■■□□□ 1.38
CAPN9-201ENST00000271971 DCAF8L2P0C7V8 631 aa23.62■■□□□ 1.37
CAPN9-201ENST00000271971 DCAF1Q9Y4B6 1507 aa23.49■■□□□ 1.35
CAPN9-201ENST00000271971 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
CAPN9-201ENST00000271971 MYO15BQ96JP2 1530 aa23.2■■□□□ 1.31
CAPN9-201ENST00000271971 NACADO15069 1562 aa23.15■■□□□ 1.3
CAPN9-201ENST00000271971 RB1CC1Q8TDY2 1594 aa22.99■■□□□ 1.27
CAPN9-201ENST00000271971 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
CAPN9-201ENST00000271971 UNC13AQ9UPW8 1703 aa22.66■■□□□ 1.22
CAPN9-201ENST00000271971 SUPT5HO00267 1087 aaKnown RBP22.37■■□□□ 1.17
CAPN9-201ENST00000271971 BICRAQ9NZM4 1560 aa22.36■■□□□ 1.17
CAPN9-201ENST00000271971 PABPN1Q86U42 306 aaKnown RBP eCLIP22.29■■□□□ 1.16
CAPN9-201ENST00000271971 CECR2Q9BXF3 1484 aa22.21■■□□□ 1.15
CAPN9-201ENST00000271971 RSF1Q96T23 1441 aaPredicted RBP22.1■■□□□ 1.13
CAPN9-201ENST00000271971 MROH2BQ7Z745 1585 aa22.06■■□□□ 1.12
CAPN9-201ENST00000271971 BAZ1AQ9NRL2 1556 aaPredicted RBP22■■□□□ 1.11
CAPN9-201ENST00000271971 SMARCA4P51532 1647 aa21.96■■□□□ 1.11
CAPN9-201ENST00000271971 WIZO95785 1651 aa21.92■■□□□ 1.1
CAPN9-201ENST00000271971 EIF4G1Q04637 1599 aaKnown RBP21.68■■□□□ 1.06
CAPN9-201ENST00000271971 PEG3Q9GZU2 1588 aa21.63■■□□□ 1.05
CAPN9-201ENST00000271971 TOP2AP11388 1531 aaKnown RBP21.62■■□□□ 1.05
CAPN9-201ENST00000271971 ATAD2BQ9ULI0 1458 aa21.57■■□□□ 1.04
CAPN9-201ENST00000271971 SMARCA2P51531 1590 aa21.54■■□□□ 1.04
CAPN9-201ENST00000271971 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
CAPN9-201ENST00000271971 CCDC88BA6NC98 1476 aa21.4■■□□□ 1.02
CAPN9-201ENST00000271971 CC2D2AQ9P2K1 1620 aa21.39■■□□□ 1.01
CAPN9-201ENST00000271971 NCAPD3P42695 1498 aa21.35■■□□□ 1.01
CAPN9-201ENST00000271971 HMGXB3Q12766 1538 aa21.35■■□□□ 1.01
CAPN9-201ENST00000271971 CHIC1Q5VXU3 224 aa21.33■■□□□ 1
CAPN9-201ENST00000271971 ABCC8Q09428 1581 aa21.02■□□□□ 0.96
CAPN9-201ENST00000271971 TRIM41Q8WV44 630 aa20.97■□□□□ 0.95
CAPN9-201ENST00000271971 DNAJC5BQ9UF47 199 aa20.92■□□□□ 0.94
CAPN9-201ENST00000271971 CFTRP13569 1480 aa20.89■□□□□ 0.93
CAPN9-201ENST00000271971 PRDM2Q13029 1718 aa20.86■□□□□ 0.93
CAPN9-201ENST00000271971 CADPSQ9ULU8 1353 aa20.81■□□□□ 0.92
CAPN9-201ENST00000271971 WRNQ14191 1432 aaPredicted RBP eCLIP20.8■□□□□ 0.92
CAPN9-201ENST00000271971 SYNJ1O43426 1573 aa20.79■□□□□ 0.92
CAPN9-201ENST00000271971 NESP48681 1621 aa20.77■□□□□ 0.91
CAPN9-201ENST00000271971 FAM9AQ8IZU1 332 aaPredicted RBP20.68■□□□□ 0.9
CAPN9-201ENST00000271971 LAMC3Q9Y6N6 1575 aa20.67■□□□□ 0.9
CAPN9-201ENST00000271971 TOP2BQ02880 1626 aa20.65■□□□□ 0.9
CAPN9-201ENST00000271971 BIVM-ERCC5R4GMW8 1640 aa20.64■□□□□ 0.89
CAPN9-201ENST00000271971 CUX1P39880 1505 aa20.63■□□□□ 0.89
CAPN9-201ENST00000271971 FANCD2Q9BXW9 1451 aa20.63■□□□□ 0.89
CAPN9-201ENST00000271971 LOC105371045A0A1W2PR82 267 aa20.57■□□□□ 0.88
CAPN9-201ENST00000271971 SOGA1O94964 1423 aa20.57■□□□□ 0.88
CAPN9-201ENST00000271971 KIF21AQ7Z4S6 1674 aa20.54■□□□□ 0.88
CAPN9-201ENST00000271971 RUSC2Q8N2Y8 1516 aa20.52■□□□□ 0.88
CAPN9-201ENST00000271971 CEP164Q9UPV0 1460 aa20.51■□□□□ 0.87
CAPN9-201ENST00000271971 PDS5BQ9NTI5 1447 aa20.48■□□□□ 0.87
CAPN9-201ENST00000271971 EHMT2Q96KQ7 1210 aa20.47■□□□□ 0.87
CAPN9-201ENST00000271971 DNMBPQ6XZF7 1577 aa20.43■□□□□ 0.86
CAPN9-201ENST00000271971 FGD5Q6ZNL6 1462 aa20.41■□□□□ 0.86
CAPN9-201ENST00000271971 TOPBP1Q92547 1522 aa20.41■□□□□ 0.86
CAPN9-201ENST00000271971 URB2Q14146 1524 aaKnown RBP20.4■□□□□ 0.86
CAPN9-201ENST00000271971 EEA1Q15075 1411 aa20.39■□□□□ 0.85
CAPN9-201ENST00000271971 CSRNP3Q8WYN3 585 aa20.32■□□□□ 0.84
CAPN9-201ENST00000271971 POLA1P09884 1462 aaPredicted RBP20.32■□□□□ 0.84
CAPN9-201ENST00000271971 RAD54L2Q9Y4B4 1467 aa20.27■□□□□ 0.84
CAPN9-201ENST00000271971 CUX2O14529 1486 aa20.26■□□□□ 0.83
CAPN9-201ENST00000271971 MRC2Q9UBG0 1479 aa20.26■□□□□ 0.83
CAPN9-201ENST00000271971 ERCC6Q03468 1493 aa20.25■□□□□ 0.83
CAPN9-201ENST00000271971 KIF27Q86VH2 1401 aa20.25■□□□□ 0.83
CAPN9-201ENST00000271971 KIF21BO75037 1637 aa20.21■□□□□ 0.83
CAPN9-201ENST00000271971 WDR97A6NE52 1622 aa20.2■□□□□ 0.82
CAPN9-201ENST00000271971 GOLGA3Q08378 1498 aa20.18■□□□□ 0.82
CAPN9-201ENST00000271971 ABCA10Q8WWZ4 1543 aa20.18■□□□□ 0.82
CAPN9-201ENST00000271971 WDR62O43379 1518 aa20.17■□□□□ 0.82
CAPN9-201ENST00000271971 THOC2Q8NI27 1593 aaKnown RBP20.17■□□□□ 0.82
CAPN9-201ENST00000271971 RAPGEF2Q9Y4G8 1499 aa20.15■□□□□ 0.82
CAPN9-201ENST00000271971 TARBP1Q13395 1621 aaKnown RBP20.13■□□□□ 0.81
CAPN9-201ENST00000271971 PRXQ9BXM0 1461 aa20.11■□□□□ 0.81
CAPN9-201ENST00000271971 UBTFP17480 764 aaKnown RBP20.1■□□□□ 0.81
CAPN9-201ENST00000271971 IGF1RP08069 1367 aa20.08■□□□□ 0.8
CAPN9-201ENST00000271971 ABCA5Q8WWZ7 1642 aa20.07■□□□□ 0.8
CAPN9-201ENST00000271971 TNIKQ9UKE5 1360 aa20.07■□□□□ 0.8
CAPN9-201ENST00000271971 ERICH3Q5RHP9 1530 aa20.06■□□□□ 0.8
CAPN9-201ENST00000271971 TDRD9Q8NDG6 1382 aaKnown RBP20.06■□□□□ 0.8
CAPN9-201ENST00000271971 CEP162Q5TB80 1403 aa20.03■□□□□ 0.8
CAPN9-201ENST00000271971 GAPVD1Q14C86 1478 aa20■□□□□ 0.79
CAPN9-201ENST00000271971 IFT140Q96RY7 1462 aa19.98■□□□□ 0.79
CAPN9-201ENST00000271971 CARMIL1Q5VZK9 1371 aa19.98■□□□□ 0.79
CAPN9-201ENST00000271971 PBRM1Q86U86 1689 aa19.97■□□□□ 0.79
CAPN9-201ENST00000271971 ZNF608Q9ULD9 1512 aaPredicted RBP19.96■□□□□ 0.79
CAPN9-201ENST00000271971 CUL7Q14999 1698 aa19.96■□□□□ 0.79
CAPN9-201ENST00000271971 AQRO60306 1485 aaKnown RBP eCLIP19.95■□□□□ 0.78
CAPN9-201ENST00000271971 RANGAP1P46060 587 aaPredicted RBP19.9■□□□□ 0.78
CAPN9-201ENST00000271971 EIF4G3O43432 1585 aaKnown RBP19.9■□□□□ 0.78
CAPN9-201ENST00000271971 CLIP1P30622 1438 aa19.87■□□□□ 0.77
CAPN9-201ENST00000271971 GRIN2BQ13224 1484 aa19.83■□□□□ 0.77
CAPN9-201ENST00000271971 ADAMTS12P58397 1594 aa19.82■□□□□ 0.76
CAPN9-201ENST00000271971 CTTNBP2Q8WZ74 1663 aa19.79■□□□□ 0.76
CAPN9-201ENST00000271971 SNAPC4Q5SXM2 1469 aa19.76■□□□□ 0.75
CAPN9-201ENST00000271971 FHAD1B1AJZ9 1412 aa19.75■□□□□ 0.75
CAPN9-201ENST00000271971 ARAP1Q96P48 1450 aa19.71■□□□□ 0.75
CAPN9-201ENST00000271971 ARHGAP35Q9NRY4 1499 aa19.7■□□□□ 0.74
CAPN9-201ENST00000271971 PPARGC1BQ86YN6 1023 aaKnown RBP19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms