RNA–Protein interactions for RNA: ENST00000266589.10

SCAF11-201, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 5

Gene SCAF11, Length 2,084 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-201ENST00000266589 NISCHQ9Y2I1 1504 aa26.05■■□□□ 1.76
SCAF11-201ENST00000266589 CCDC180Q9P1Z9 1646 aa22.7■■□□□ 1.22
SCAF11-201ENST00000266589 ZCCHC6Q5VYS8 1495 aaKnown RBP21.91■■□□□ 1.1
SCAF11-201ENST00000266589 DCAF1Q9Y4B6 1507 aa21.52■■□□□ 1.04
SCAF11-201ENST00000266589 DCAF8L2P0C7V8 631 aa21.51■■□□□ 1.03
SCAF11-201ENST00000266589 ABCC9O60706 1549 aa21.4■■□□□ 1.02
SCAF11-201ENST00000266589 SHROOM4Q9ULL8 1493 aa21.35■■□□□ 1.01
SCAF11-201ENST00000266589 MYO15BQ96JP2 1530 aa21.22■□□□□ 0.99
SCAF11-201ENST00000266589 NACADO15069 1562 aa21.1■□□□□ 0.97
SCAF11-201ENST00000266589 SCRIBQ14160 1630 aa20.92■□□□□ 0.94
SCAF11-201ENST00000266589 RB1CC1Q8TDY2 1594 aa20.92■□□□□ 0.94
SCAF11-201ENST00000266589 SUPT5HO00267 1087 aaKnown RBP20.56■□□□□ 0.88
SCAF11-201ENST00000266589 UNC13AQ9UPW8 1703 aa20.56■□□□□ 0.88
SCAF11-201ENST00000266589 BICRAQ9NZM4 1560 aa20.29■□□□□ 0.84
SCAF11-201ENST00000266589 CECR2Q9BXF3 1484 aa20.25■□□□□ 0.83
SCAF11-201ENST00000266589 RSF1Q96T23 1441 aaPredicted RBP20.24■□□□□ 0.83
SCAF11-201ENST00000266589 PABPN1Q86U42 306 aaKnown RBP eCLIP20.18■□□□□ 0.82
SCAF11-201ENST00000266589 MROH2BQ7Z745 1585 aa20.15■□□□□ 0.82
SCAF11-201ENST00000266589 BAZ1AQ9NRL2 1556 aaPredicted RBP20.12■□□□□ 0.81
SCAF11-201ENST00000266589 SMARCA4P51532 1647 aa20.04■□□□□ 0.8
SCAF11-201ENST00000266589 WIZO95785 1651 aa20.02■□□□□ 0.8
SCAF11-201ENST00000266589 TOP2AP11388 1531 aaKnown RBP19.78■□□□□ 0.76
SCAF11-201ENST00000266589 PEG3Q9GZU2 1588 aa19.76■□□□□ 0.75
SCAF11-201ENST00000266589 CHIC1Q5VXU3 224 aa19.7■□□□□ 0.74
SCAF11-201ENST00000266589 EIF4G1Q04637 1599 aaKnown RBP19.67■□□□□ 0.74
SCAF11-201ENST00000266589 ATAD2BQ9ULI0 1458 aa19.66■□□□□ 0.74
SCAF11-201ENST00000266589 SMARCA2P51531 1590 aa19.65■□□□□ 0.74
SCAF11-201ENST00000266589 CCDC88BA6NC98 1476 aa19.57■□□□□ 0.72
SCAF11-201ENST00000266589 BAZ1BQ9UIG0 1483 aaKnown RBP19.57■□□□□ 0.72
SCAF11-201ENST00000266589 HMGXB3Q12766 1538 aa19.47■□□□□ 0.71
SCAF11-201ENST00000266589 NCAPD3P42695 1498 aa19.46■□□□□ 0.71
SCAF11-201ENST00000266589 CC2D2AQ9P2K1 1620 aa19.38■□□□□ 0.69
SCAF11-201ENST00000266589 TRIM41Q8WV44 630 aa19.31■□□□□ 0.68
SCAF11-201ENST00000266589 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
SCAF11-201ENST00000266589 CFTRP13569 1480 aa19.06■□□□□ 0.64
SCAF11-201ENST00000266589 WRNQ14191 1432 aaPredicted RBP eCLIP19.06■□□□□ 0.64
SCAF11-201ENST00000266589 PRDM2Q13029 1718 aa19.03■□□□□ 0.64
SCAF11-201ENST00000266589 SYNJ1O43426 1573 aa19.01■□□□□ 0.63
SCAF11-201ENST00000266589 FAM9AQ8IZU1 332 aaPredicted RBP18.99■□□□□ 0.63
SCAF11-201ENST00000266589 LOC105371045A0A1W2PR82 267 aa18.97■□□□□ 0.63
SCAF11-201ENST00000266589 CADPSQ9ULU8 1353 aa18.97■□□□□ 0.63
SCAF11-201ENST00000266589 TOP2BQ02880 1626 aa18.9■□□□□ 0.62
SCAF11-201ENST00000266589 BIVM-ERCC5R4GMW8 1640 aa18.89■□□□□ 0.62
SCAF11-201ENST00000266589 SOGA1O94964 1423 aa18.86■□□□□ 0.61
SCAF11-201ENST00000266589 DNAJC5BQ9UF47 199 aa18.84■□□□□ 0.61
SCAF11-201ENST00000266589 CUX1P39880 1505 aa18.83■□□□□ 0.61
SCAF11-201ENST00000266589 NESP48681 1621 aa18.82■□□□□ 0.6
SCAF11-201ENST00000266589 LAMC3Q9Y6N6 1575 aa18.81■□□□□ 0.6
SCAF11-201ENST00000266589 EEA1Q15075 1411 aa18.81■□□□□ 0.6
SCAF11-201ENST00000266589 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
SCAF11-201ENST00000266589 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
SCAF11-201ENST00000266589 EHMT2Q96KQ7 1210 aa18.75■□□□□ 0.59
SCAF11-201ENST00000266589 CSRNP3Q8WYN3 585 aa18.69■□□□□ 0.58
SCAF11-201ENST00000266589 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
SCAF11-201ENST00000266589 PDS5BQ9NTI5 1447 aa18.64■□□□□ 0.57
SCAF11-201ENST00000266589 DNMBPQ6XZF7 1577 aa18.64■□□□□ 0.57
SCAF11-201ENST00000266589 KIF21AQ7Z4S6 1674 aa18.62■□□□□ 0.57
SCAF11-201ENST00000266589 FGD5Q6ZNL6 1462 aa18.62■□□□□ 0.57
SCAF11-201ENST00000266589 TOPBP1Q92547 1522 aa18.6■□□□□ 0.57
SCAF11-201ENST00000266589 KIF21BO75037 1637 aa18.6■□□□□ 0.57
SCAF11-201ENST00000266589 GOLGA3Q08378 1498 aa18.57■□□□□ 0.56
SCAF11-201ENST00000266589 KIF27Q86VH2 1401 aa18.56■□□□□ 0.56
SCAF11-201ENST00000266589 URB2Q14146 1524 aaKnown RBP18.55■□□□□ 0.56
SCAF11-201ENST00000266589 CUX2O14529 1486 aa18.51■□□□□ 0.55
SCAF11-201ENST00000266589 POLA1P09884 1462 aaPredicted RBP18.51■□□□□ 0.55
SCAF11-201ENST00000266589 TNIKQ9UKE5 1360 aa18.51■□□□□ 0.55
SCAF11-201ENST00000266589 UBTFP17480 764 aaKnown RBP18.48■□□□□ 0.55
SCAF11-201ENST00000266589 RAPGEF2Q9Y4G8 1499 aa18.47■□□□□ 0.55
SCAF11-201ENST00000266589 RAD54L2Q9Y4B4 1467 aa18.46■□□□□ 0.55
SCAF11-201ENST00000266589 PRXQ9BXM0 1461 aa18.45■□□□□ 0.54
SCAF11-201ENST00000266589 CEP162Q5TB80 1403 aa18.45■□□□□ 0.54
SCAF11-201ENST00000266589 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
SCAF11-201ENST00000266589 ABCA10Q8WWZ4 1543 aa18.44■□□□□ 0.54
SCAF11-201ENST00000266589 WDR97A6NE52 1622 aa18.42■□□□□ 0.54
SCAF11-201ENST00000266589 MRC2Q9UBG0 1479 aa18.41■□□□□ 0.54
SCAF11-201ENST00000266589 IGF1RP08069 1367 aa18.37■□□□□ 0.53
SCAF11-201ENST00000266589 ERCC6Q03468 1493 aa18.34■□□□□ 0.53
SCAF11-201ENST00000266589 WDR62O43379 1518 aa18.32■□□□□ 0.52
SCAF11-201ENST00000266589 TARBP1Q13395 1621 aaKnown RBP18.32■□□□□ 0.52
SCAF11-201ENST00000266589 ABCA5Q8WWZ7 1642 aa18.31■□□□□ 0.52
SCAF11-201ENST00000266589 CARMIL1Q5VZK9 1371 aa18.29■□□□□ 0.52
SCAF11-201ENST00000266589 CLIP1P30622 1438 aa18.28■□□□□ 0.52
SCAF11-201ENST00000266589 THOC2Q8NI27 1593 aaKnown RBP18.27■□□□□ 0.52
SCAF11-201ENST00000266589 CUL7Q14999 1698 aa18.27■□□□□ 0.52
SCAF11-201ENST00000266589 TDRD9Q8NDG6 1382 aaKnown RBP18.26■□□□□ 0.51
SCAF11-201ENST00000266589 GAPVD1Q14C86 1478 aa18.24■□□□□ 0.51
SCAF11-201ENST00000266589 RANGAP1P46060 587 aaPredicted RBP18.19■□□□□ 0.5
SCAF11-201ENST00000266589 PCGF6Q9BYE7 350 aa18.19■□□□□ 0.5
SCAF11-201ENST00000266589 IFT140Q96RY7 1462 aa18.19■□□□□ 0.5
SCAF11-201ENST00000266589 PBRM1Q86U86 1689 aa18.19■□□□□ 0.5
SCAF11-201ENST00000266589 TRIM26Q12899 539 aaPredicted RBP18.14■□□□□ 0.5
SCAF11-201ENST00000266589 AQRO60306 1485 aaKnown RBP eCLIP18.13■□□□□ 0.49
SCAF11-201ENST00000266589 VPS8Q8N3P4 1428 aa18.13■□□□□ 0.49
SCAF11-201ENST00000266589 ZNF608Q9ULD9 1512 aaPredicted RBP18.11■□□□□ 0.49
SCAF11-201ENST00000266589 CTTNBP2Q8WZ74 1663 aa18.11■□□□□ 0.49
SCAF11-201ENST00000266589 PPARGC1BQ86YN6 1023 aaKnown RBP18.1■□□□□ 0.49
SCAF11-201ENST00000266589 ARAP1Q96P48 1450 aa18.1■□□□□ 0.49
SCAF11-201ENST00000266589 EIF4G3O43432 1585 aaKnown RBP18.08■□□□□ 0.49
SCAF11-201ENST00000266589 GRIN2BQ13224 1484 aa18.08■□□□□ 0.48
SCAF11-201ENST00000266589 ARHGAP35Q9NRY4 1499 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms