RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 NISCHQ9Y2I1 1504 aa24.06■■□□□ 1.44
VPS41-201ENST00000265745 CHIC1Q5VXU3 224 aa22.36■■□□□ 1.17
VPS41-201ENST00000265745 AEBP2Q6ZN18 517 aaPredicted RBP22.19■■□□□ 1.14
VPS41-201ENST00000265745 ABCC9O60706 1549 aa21.41■■□□□ 1.02
VPS41-201ENST00000265745 CCDC180Q9P1Z9 1646 aa21.37■■□□□ 1.01
VPS41-201ENST00000265745 DCAF8L2P0C7V8 631 aa20.37■□□□□ 0.85
VPS41-201ENST00000265745 RB1CC1Q8TDY2 1594 aa20.37■□□□□ 0.85
VPS41-201ENST00000265745 NACADO15069 1562 aa20.29■□□□□ 0.84
VPS41-201ENST00000265745 DNAJC5BQ9UF47 199 aa20.1■□□□□ 0.81
VPS41-201ENST00000265745 MYO15BQ96JP2 1530 aa20.09■□□□□ 0.81
VPS41-201ENST00000265745 PABPN1Q86U42 306 aaKnown RBP eCLIP20.05■□□□□ 0.8
VPS41-201ENST00000265745 ZCCHC6Q5VYS8 1495 aaKnown RBP19.95■□□□□ 0.78
VPS41-201ENST00000265745 DCAF1Q9Y4B6 1507 aa19.87■□□□□ 0.77
VPS41-201ENST00000265745 BICRAQ9NZM4 1560 aa19.78■□□□□ 0.76
VPS41-201ENST00000265745 PHF23Q9BUL5 403 aaPredicted RBP19.78■□□□□ 0.76
VPS41-201ENST00000265745 UNC13AQ9UPW8 1703 aa19.73■□□□□ 0.75
VPS41-201ENST00000265745 SCRIBQ14160 1630 aa19.54■□□□□ 0.72
VPS41-201ENST00000265745 SHROOM4Q9ULL8 1493 aa19.54■□□□□ 0.72
VPS41-201ENST00000265745 EIF4G1Q04637 1599 aaKnown RBP19.29■□□□□ 0.68
VPS41-201ENST00000265745 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
VPS41-201ENST00000265745 CC2D2AQ9P2K1 1620 aa19.28■□□□□ 0.68
VPS41-201ENST00000265745 NCAPD3P42695 1498 aa18.82■□□□□ 0.6
VPS41-201ENST00000265745 ATAD2BQ9ULI0 1458 aa18.76■□□□□ 0.59
VPS41-201ENST00000265745 SMARCA4P51532 1647 aa18.66■□□□□ 0.58
VPS41-201ENST00000265745 SMARCA2P51531 1590 aa18.65■□□□□ 0.58
VPS41-201ENST00000265745 SENP3Q9H4L4 574 aaPredicted RBP18.65■□□□□ 0.58
VPS41-201ENST00000265745 BAZ1AQ9NRL2 1556 aaPredicted RBP18.63■□□□□ 0.57
VPS41-201ENST00000265745 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
VPS41-201ENST00000265745 BAZ1BQ9UIG0 1483 aaKnown RBP18.54■□□□□ 0.56
VPS41-201ENST00000265745 MROH2BQ7Z745 1585 aa18.54■□□□□ 0.56
VPS41-201ENST00000265745 PEG3Q9GZU2 1588 aa18.51■□□□□ 0.55
VPS41-201ENST00000265745 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
VPS41-201ENST00000265745 PLPPR3Q6T4P5 718 aa18.47■□□□□ 0.55
VPS41-201ENST00000265745 NESP48681 1621 aa18.42■□□□□ 0.54
VPS41-201ENST00000265745 CUX2O14529 1486 aa18.39■□□□□ 0.53
VPS41-201ENST00000265745 DNAJC5Q9H3Z4 198 aa18.36■□□□□ 0.53
VPS41-201ENST00000265745 RSF1Q96T23 1441 aaPredicted RBP18.27■□□□□ 0.52
VPS41-201ENST00000265745 CADPSQ9ULU8 1353 aa18.27■□□□□ 0.51
VPS41-201ENST00000265745 LAMC3Q9Y6N6 1575 aa18.25■□□□□ 0.51
VPS41-201ENST00000265745 PDS5BQ9NTI5 1447 aa18.25■□□□□ 0.51
VPS41-201ENST00000265745 WIZO95785 1651 aa18.23■□□□□ 0.51
VPS41-201ENST00000265745 THOC2Q8NI27 1593 aaKnown RBP18.11■□□□□ 0.49
VPS41-201ENST00000265745 TOP2AP11388 1531 aaKnown RBP18.06■□□□□ 0.48
VPS41-201ENST00000265745 CFTRP13569 1480 aa18.06■□□□□ 0.48
VPS41-201ENST00000265745 MRC2Q9UBG0 1479 aa18.04■□□□□ 0.48
VPS41-201ENST00000265745 KIF21AQ7Z4S6 1674 aa18.03■□□□□ 0.48
VPS41-201ENST00000265745 FANCD2Q9BXW9 1451 aa18.01■□□□□ 0.47
VPS41-201ENST00000265745 CEP164Q9UPV0 1460 aa17.98■□□□□ 0.47
VPS41-201ENST00000265745 WDR62O43379 1518 aa17.96■□□□□ 0.47
VPS41-201ENST00000265745 CCDC88BA6NC98 1476 aa17.93■□□□□ 0.46
VPS41-201ENST00000265745 URB2Q14146 1524 aaKnown RBP17.83■□□□□ 0.45
VPS41-201ENST00000265745 OSCARQ8IYS5 282 aa17.69■□□□□ 0.42
VPS41-201ENST00000265745 TOPBP1Q92547 1522 aa17.66■□□□□ 0.42
VPS41-201ENST00000265745 IFT140Q96RY7 1462 aa17.65■□□□□ 0.42
VPS41-201ENST00000265745 ABCC8Q09428 1581 aa17.65■□□□□ 0.42
VPS41-201ENST00000265745 ZNF608Q9ULD9 1512 aaPredicted RBP17.61■□□□□ 0.41
VPS41-201ENST00000265745 SUPT5HO00267 1087 aaKnown RBP17.6■□□□□ 0.41
VPS41-201ENST00000265745 PRDM2Q13029 1718 aa17.58■□□□□ 0.41
VPS41-201ENST00000265745 TRIM41Q8WV44 630 aa17.56■□□□□ 0.4
VPS41-201ENST00000265745 DNMBPQ6XZF7 1577 aa17.56■□□□□ 0.4
VPS41-201ENST00000265745 AQRO60306 1485 aaKnown RBP eCLIP17.5■□□□□ 0.39
VPS41-201ENST00000265745 POLA1P09884 1462 aaPredicted RBP17.5■□□□□ 0.39
VPS41-201ENST00000265745 SOGA1O94964 1423 aa17.47■□□□□ 0.39
VPS41-201ENST00000265745 RAD54L2Q9Y4B4 1467 aa17.45■□□□□ 0.38
VPS41-201ENST00000265745 TDRD9Q8NDG6 1382 aaKnown RBP17.44■□□□□ 0.38
VPS41-201ENST00000265745 TARBP1Q13395 1621 aaKnown RBP17.43■□□□□ 0.38
VPS41-201ENST00000265745 CUX1P39880 1505 aa17.4■□□□□ 0.38
VPS41-201ENST00000265745 EIF4G3O43432 1585 aaKnown RBP17.4■□□□□ 0.38
VPS41-201ENST00000265745 FGD5Q6ZNL6 1462 aa17.39■□□□□ 0.37
VPS41-201ENST00000265745 FBLN2P98095 1184 aa17.39■□□□□ 0.37
VPS41-201ENST00000265745 ADRA2BP18089 450 aa17.35■□□□□ 0.37
VPS41-201ENST00000265745 CHMP7Q8WUX9 453 aaPredicted RBP17.29■□□□□ 0.36
VPS41-201ENST00000265745 ARHGEF11O15085 1522 aa17.27■□□□□ 0.36
VPS41-201ENST00000265745 SNAPC4Q5SXM2 1469 aa17.27■□□□□ 0.36
VPS41-201ENST00000265745 GRIN2BQ13224 1484 aa17.26■□□□□ 0.35
VPS41-201ENST00000265745 FOXD1Q16676 465 aa17.26■□□□□ 0.35
VPS41-201ENST00000265745 CYB5RLQ6IPT4 315 aa17.26■□□□□ 0.35
VPS41-201ENST00000265745 WDR97A6NE52 1622 aa17.25■□□□□ 0.35
VPS41-201ENST00000265745 RIMBP3CA6NJZ7 1639 aa17.25■□□□□ 0.35
VPS41-201ENST00000265745 RIMBP3BA6NNM3 1639 aa17.25■□□□□ 0.35
VPS41-201ENST00000265745 RIMBP3Q9UFD9 1639 aa17.25■□□□□ 0.35
VPS41-201ENST00000265745 GAPVD1Q14C86 1478 aa17.23■□□□□ 0.35
VPS41-201ENST00000265745 MAGI1Q96QZ7 1491 aaPredicted RBP17.23■□□□□ 0.35
VPS41-201ENST00000265745 WRNQ14191 1432 aaPredicted RBP eCLIP17.22■□□□□ 0.35
VPS41-201ENST00000265745 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
VPS41-201ENST00000265745 PPP6R1Q9UPN7 881 aa17.22■□□□□ 0.35
VPS41-201ENST00000265745 SYNJ2O15056 1496 aa17.18■□□□□ 0.34
VPS41-201ENST00000265745 CHD1O14646 1710 aa17.18■□□□□ 0.34
VPS41-201ENST00000265745 ARAP1Q96P48 1450 aa17.13■□□□□ 0.33
VPS41-201ENST00000265745 CLASP1Q7Z460 1538 aa17.11■□□□□ 0.33
VPS41-201ENST00000265745 TOP2BQ02880 1626 aa17.1■□□□□ 0.33
VPS41-201ENST00000265745 SYNJ1O43426 1573 aa17.09■□□□□ 0.33
VPS41-201ENST00000265745 ABCA5Q8WWZ7 1642 aa17.09■□□□□ 0.33
VPS41-201ENST00000265745 BIVM-ERCC5R4GMW8 1640 aa17.05■□□□□ 0.32
VPS41-201ENST00000265745 FHAD1B1AJZ9 1412 aa17.04■□□□□ 0.32
VPS41-201ENST00000265745 GRIN2AQ12879 1464 aa17.03■□□□□ 0.32
VPS41-201ENST00000265745 PBRM1Q86U86 1689 aa17.01■□□□□ 0.31
VPS41-201ENST00000265745 TRHP20396 242 aaPredicted RBP17■□□□□ 0.31
VPS41-201ENST00000265745 NUP160Q12769 1436 aa17■□□□□ 0.31
VPS41-201ENST00000265745 ERICH3Q5RHP9 1530 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms