RNA–Protein interactions for RNA: ENST00000265735.11

SGCE-201, Transcript of sarcoglycan epsilon, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGCE, Length 1,694 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-201ENST00000265735 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
SGCE-201ENST00000265735 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
SGCE-201ENST00000265735 ABCC9O60706 1549 aa26.58■■□□□ 1.84
SGCE-201ENST00000265735 RB1CC1Q8TDY2 1594 aa25.6■■□□□ 1.69
SGCE-201ENST00000265735 NACADO15069 1562 aa25.6■■□□□ 1.69
SGCE-201ENST00000265735 ZCCHC6Q5VYS8 1495 aaKnown RBP25.51■■□□□ 1.67
SGCE-201ENST00000265735 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
SGCE-201ENST00000265735 DCAF8L2P0C7V8 631 aa25.48■■□□□ 1.67
SGCE-201ENST00000265735 DCAF1Q9Y4B6 1507 aa25.37■■□□□ 1.65
SGCE-201ENST00000265735 UNC13AQ9UPW8 1703 aa25.07■■□□□ 1.6
SGCE-201ENST00000265735 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
SGCE-201ENST00000265735 PABPN1Q86U42 306 aaKnown RBP eCLIP24.83■■□□□ 1.57
SGCE-201ENST00000265735 SCRIBQ14160 1630 aa24.79■■□□□ 1.56
SGCE-201ENST00000265735 SHROOM4Q9ULL8 1493 aa24.6■■□□□ 1.53
SGCE-201ENST00000265735 DNAJC5BQ9UF47 199 aa24.43■■□□□ 1.5
SGCE-201ENST00000265735 EIF4G1Q04637 1599 aaKnown RBP24.18■■□□□ 1.46
SGCE-201ENST00000265735 CC2D2AQ9P2K1 1620 aa24.07■■□□□ 1.44
SGCE-201ENST00000265735 CECR2Q9BXF3 1484 aa23.89■■□□□ 1.42
SGCE-201ENST00000265735 SMARCA4P51532 1647 aa23.75■■□□□ 1.39
SGCE-201ENST00000265735 BAZ1AQ9NRL2 1556 aaPredicted RBP23.72■■□□□ 1.39
SGCE-201ENST00000265735 NCAPD3P42695 1498 aa23.63■■□□□ 1.37
SGCE-201ENST00000265735 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
SGCE-201ENST00000265735 MROH2BQ7Z745 1585 aa23.59■■□□□ 1.37
SGCE-201ENST00000265735 SMARCA2P51531 1590 aa23.59■■□□□ 1.37
SGCE-201ENST00000265735 PEG3Q9GZU2 1588 aa23.56■■□□□ 1.36
SGCE-201ENST00000265735 HMGXB3Q12766 1538 aa23.5■■□□□ 1.35
SGCE-201ENST00000265735 BAZ1BQ9UIG0 1483 aaKnown RBP23.4■■□□□ 1.34
SGCE-201ENST00000265735 WIZO95785 1651 aa23.34■■□□□ 1.33
SGCE-201ENST00000265735 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.32
SGCE-201ENST00000265735 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.29
SGCE-201ENST00000265735 NESP48681 1621 aa23.02■■□□□ 1.28
SGCE-201ENST00000265735 LAMC3Q9Y6N6 1575 aa23■■□□□ 1.27
SGCE-201ENST00000265735 CADPSQ9ULU8 1353 aa22.92■■□□□ 1.26
SGCE-201ENST00000265735 ERCC6Q03468 1493 aa22.88■■□□□ 1.25
SGCE-201ENST00000265735 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
SGCE-201ENST00000265735 PDS5BQ9NTI5 1447 aa22.81■■□□□ 1.24
SGCE-201ENST00000265735 CFTRP13569 1480 aa22.8■■□□□ 1.24
SGCE-201ENST00000265735 KIF21AQ7Z4S6 1674 aa22.77■■□□□ 1.23
SGCE-201ENST00000265735 THOC2Q8NI27 1593 aaKnown RBP22.69■■□□□ 1.22
SGCE-201ENST00000265735 CUX2O14529 1486 aa22.69■■□□□ 1.22
SGCE-201ENST00000265735 SUPT5HO00267 1087 aaKnown RBP22.66■■□□□ 1.22
SGCE-201ENST00000265735 FANCD2Q9BXW9 1451 aa22.64■■□□□ 1.22
SGCE-201ENST00000265735 PRDM2Q13029 1718 aa22.63■■□□□ 1.21
SGCE-201ENST00000265735 CEP164Q9UPV0 1460 aa22.6■■□□□ 1.21
SGCE-201ENST00000265735 MRC2Q9UBG0 1479 aa22.58■■□□□ 1.2
SGCE-201ENST00000265735 WDR62O43379 1518 aa22.53■■□□□ 1.2
SGCE-201ENST00000265735 URB2Q14146 1524 aaKnown RBP22.43■■□□□ 1.18
SGCE-201ENST00000265735 ABCC8Q09428 1581 aa22.3■■□□□ 1.16
SGCE-201ENST00000265735 TOPBP1Q92547 1522 aa22.29■■□□□ 1.16
SGCE-201ENST00000265735 DNMBPQ6XZF7 1577 aa22.26■■□□□ 1.15
SGCE-201ENST00000265735 IFT140Q96RY7 1462 aa22.14■■□□□ 1.13
SGCE-201ENST00000265735 CUX1P39880 1505 aa22.13■■□□□ 1.13
SGCE-201ENST00000265735 POLA1P09884 1462 aaPredicted RBP22.1■■□□□ 1.13
SGCE-201ENST00000265735 TARBP1Q13395 1621 aaKnown RBP22.07■■□□□ 1.12
SGCE-201ENST00000265735 ZNF608Q9ULD9 1512 aaPredicted RBP22.04■■□□□ 1.12
SGCE-201ENST00000265735 FGD5Q6ZNL6 1462 aa22.04■■□□□ 1.12
SGCE-201ENST00000265735 SOGA1O94964 1423 aa22■■□□□ 1.11
SGCE-201ENST00000265735 DNAJC5Q9H3Z4 198 aa22■■□□□ 1.11
SGCE-201ENST00000265735 RAD54L2Q9Y4B4 1467 aa21.99■■□□□ 1.11
SGCE-201ENST00000265735 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
SGCE-201ENST00000265735 EIF4G3O43432 1585 aaKnown RBP21.96■■□□□ 1.11
SGCE-201ENST00000265735 BIVM-ERCC5R4GMW8 1640 aa21.95■■□□□ 1.11
SGCE-201ENST00000265735 TOP2BQ02880 1626 aa21.95■■□□□ 1.1
SGCE-201ENST00000265735 SYNJ1O43426 1573 aa21.93■■□□□ 1.1
SGCE-201ENST00000265735 AQRO60306 1485 aaKnown RBP eCLIP21.9■■□□□ 1.1
SGCE-201ENST00000265735 WDR97A6NE52 1622 aa21.9■■□□□ 1.1
SGCE-201ENST00000265735 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
SGCE-201ENST00000265735 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
SGCE-201ENST00000265735 ABCA5Q8WWZ7 1642 aa21.76■■□□□ 1.07
SGCE-201ENST00000265735 OSCARQ8IYS5 282 aa21.75■■□□□ 1.07
SGCE-201ENST00000265735 GAPVD1Q14C86 1478 aa21.75■■□□□ 1.07
SGCE-201ENST00000265735 GRIN2BQ13224 1484 aa21.74■■□□□ 1.07
SGCE-201ENST00000265735 PBRM1Q86U86 1689 aa21.71■■□□□ 1.07
SGCE-201ENST00000265735 SNAPC4Q5SXM2 1469 aa21.7■■□□□ 1.06
SGCE-201ENST00000265735 MAGI1Q96QZ7 1491 aaPredicted RBP21.69■■□□□ 1.06
SGCE-201ENST00000265735 CHD1O14646 1710 aa21.68■■□□□ 1.06
SGCE-201ENST00000265735 SYNJ2O15056 1496 aa21.61■■□□□ 1.05
SGCE-201ENST00000265735 FBLN2P98095 1184 aa21.59■■□□□ 1.05
SGCE-201ENST00000265735 ERICH3Q5RHP9 1530 aa21.59■■□□□ 1.05
SGCE-201ENST00000265735 CHMP7Q8WUX9 453 aaPredicted RBP21.56■■□□□ 1.04
SGCE-201ENST00000265735 ADAMTS12P58397 1594 aa21.54■■□□□ 1.04
SGCE-201ENST00000265735 KIF27Q86VH2 1401 aa21.51■■□□□ 1.03
SGCE-201ENST00000265735 FHAD1B1AJZ9 1412 aa21.5■■□□□ 1.03
SGCE-201ENST00000265735 GRIN2AQ12879 1464 aa21.47■■□□□ 1.03
SGCE-201ENST00000265735 CLASP1Q7Z460 1538 aa21.47■■□□□ 1.03
SGCE-201ENST00000265735 IGF1RP08069 1367 aa21.44■■□□□ 1.02
SGCE-201ENST00000265735 TRIM41Q8WV44 630 aa21.42■■□□□ 1.02
SGCE-201ENST00000265735 RIMBP3CA6NJZ7 1639 aa21.41■■□□□ 1.02
SGCE-201ENST00000265735 RIMBP3BA6NNM3 1639 aa21.41■■□□□ 1.02
SGCE-201ENST00000265735 RIMBP3Q9UFD9 1639 aa21.41■■□□□ 1.02
SGCE-201ENST00000265735 ARHGEF11O15085 1522 aa21.4■■□□□ 1.02
SGCE-201ENST00000265735 NUP160Q12769 1436 aa21.39■■□□□ 1.02
SGCE-201ENST00000265735 CUL7Q14999 1698 aa21.38■■□□□ 1.01
SGCE-201ENST00000265735 CEP170Q5SW79 1584 aa21.37■■□□□ 1.01
SGCE-201ENST00000265735 RUSC2Q8N2Y8 1516 aa21.33■■□□□ 1.01
SGCE-201ENST00000265735 AEBP2Q6ZN18 517 aaPredicted RBP21.32■■□□□ 1
SGCE-201ENST00000265735 CARMIL1Q5VZK9 1371 aa21.3■■□□□ 1
SGCE-201ENST00000265735 SHROOM2Q13796 1616 aa21.24■□□□□ 0.99
SGCE-201ENST00000265735 ARAP1Q96P48 1450 aa21.23■□□□□ 0.99
SGCE-201ENST00000265735 CHIC1Q5VXU3 224 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms