RNA–Protein interactions for RNA: ENST00000263598.6

LCN1-201, Transcript of lipocalin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LCN1, Length 776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCN1-201ENST00000263598 NISCHQ9Y2I1 1504 aa22.58■■□□□ 1.21
LCN1-201ENST00000263598 ABCC9O60706 1549 aa20.49■□□□□ 0.87
LCN1-201ENST00000263598 CCDC180Q9P1Z9 1646 aa20.31■□□□□ 0.84
LCN1-201ENST00000263598 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
LCN1-201ENST00000263598 DNAJC5BQ9UF47 199 aa19.33■□□□□ 0.68
LCN1-201ENST00000263598 NACADO15069 1562 aa19.27■□□□□ 0.68
LCN1-201ENST00000263598 DCAF8L2P0C7V8 631 aa19.18■□□□□ 0.66
LCN1-201ENST00000263598 PABPN1Q86U42 306 aaKnown RBP eCLIP19.06■□□□□ 0.64
LCN1-201ENST00000263598 MYO15BQ96JP2 1530 aa18.96■□□□□ 0.63
LCN1-201ENST00000263598 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
LCN1-201ENST00000263598 BICRAQ9NZM4 1560 aa18.83■□□□□ 0.6
LCN1-201ENST00000263598 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
LCN1-201ENST00000263598 DCAF1Q9Y4B6 1507 aa18.65■□□□□ 0.58
LCN1-201ENST00000263598 SHROOM4Q9ULL8 1493 aa18.63■□□□□ 0.57
LCN1-201ENST00000263598 SCRIBQ14160 1630 aa18.5■□□□□ 0.55
LCN1-201ENST00000263598 CC2D2AQ9P2K1 1620 aa18.49■□□□□ 0.55
LCN1-201ENST00000263598 CECR2Q9BXF3 1484 aa18.48■□□□□ 0.55
LCN1-201ENST00000263598 EIF4G1Q04637 1599 aaKnown RBP18.42■□□□□ 0.54
LCN1-201ENST00000263598 DNAJC5Q9H3Z4 198 aa17.91■□□□□ 0.46
LCN1-201ENST00000263598 NCAPD3P42695 1498 aa17.8■□□□□ 0.44
LCN1-201ENST00000263598 CUX2O14529 1486 aa17.75■□□□□ 0.43
LCN1-201ENST00000263598 ERCC6Q03468 1493 aa17.74■□□□□ 0.43
LCN1-201ENST00000263598 ATAD2BQ9ULI0 1458 aa17.71■□□□□ 0.43
LCN1-201ENST00000263598 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
LCN1-201ENST00000263598 HMGXB3Q12766 1538 aa17.64■□□□□ 0.41
LCN1-201ENST00000263598 SMARCA4P51532 1647 aa17.63■□□□□ 0.41
LCN1-201ENST00000263598 BAZ1AQ9NRL2 1556 aaPredicted RBP17.56■□□□□ 0.4
LCN1-201ENST00000263598 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
LCN1-201ENST00000263598 NESP48681 1621 aa17.53■□□□□ 0.4
LCN1-201ENST00000263598 PEG3Q9GZU2 1588 aa17.48■□□□□ 0.39
LCN1-201ENST00000263598 LAMC3Q9Y6N6 1575 aa17.42■□□□□ 0.38
LCN1-201ENST00000263598 MROH2BQ7Z745 1585 aa17.38■□□□□ 0.37
LCN1-201ENST00000263598 THOC2Q8NI27 1593 aaKnown RBP17.38■□□□□ 0.37
LCN1-201ENST00000263598 PDS5BQ9NTI5 1447 aa17.35■□□□□ 0.37
LCN1-201ENST00000263598 KIF21AQ7Z4S6 1674 aa17.28■□□□□ 0.36
LCN1-201ENST00000263598 CADPSQ9ULU8 1353 aa17.26■□□□□ 0.35
LCN1-201ENST00000263598 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
LCN1-201ENST00000263598 WIZO95785 1651 aa17.15■□□□□ 0.34
LCN1-201ENST00000263598 WDR62O43379 1518 aa17.13■□□□□ 0.33
LCN1-201ENST00000263598 CEP164Q9UPV0 1460 aa17.1■□□□□ 0.33
LCN1-201ENST00000263598 TRIM41Q8WV44 630 aa17.08■□□□□ 0.32
LCN1-201ENST00000263598 FANCD2Q9BXW9 1451 aa17.05■□□□□ 0.32
LCN1-201ENST00000263598 CFTRP13569 1480 aa17.01■□□□□ 0.31
LCN1-201ENST00000263598 RSF1Q96T23 1441 aaPredicted RBP16.98■□□□□ 0.31
LCN1-201ENST00000263598 TOP2AP11388 1531 aaKnown RBP16.96■□□□□ 0.3
LCN1-201ENST00000263598 OSCARQ8IYS5 282 aa16.93■□□□□ 0.3
LCN1-201ENST00000263598 URB2Q14146 1524 aaKnown RBP16.9■□□□□ 0.3
LCN1-201ENST00000263598 PRDM2Q13029 1718 aa16.78■□□□□ 0.28
LCN1-201ENST00000263598 CCDC88BA6NC98 1476 aa16.77■□□□□ 0.28
LCN1-201ENST00000263598 IFT140Q96RY7 1462 aa16.76■□□□□ 0.27
LCN1-201ENST00000263598 ZNF608Q9ULD9 1512 aaPredicted RBP16.71■□□□□ 0.27
LCN1-201ENST00000263598 TOPBP1Q92547 1522 aa16.7■□□□□ 0.26
LCN1-201ENST00000263598 ABCC8Q09428 1581 aa16.7■□□□□ 0.26
LCN1-201ENST00000263598 RIMBP3CA6NJZ7 1639 aa16.67■□□□□ 0.26
LCN1-201ENST00000263598 RIMBP3BA6NNM3 1639 aa16.67■□□□□ 0.26
LCN1-201ENST00000263598 RIMBP3Q9UFD9 1639 aa16.67■□□□□ 0.26
LCN1-201ENST00000263598 DNMBPQ6XZF7 1577 aa16.63■□□□□ 0.25
LCN1-201ENST00000263598 ARHGEF11O15085 1522 aa16.61■□□□□ 0.25
LCN1-201ENST00000263598 EIF4G3O43432 1585 aaKnown RBP16.61■□□□□ 0.25
LCN1-201ENST00000263598 AQRO60306 1485 aaKnown RBP eCLIP16.56■□□□□ 0.24
LCN1-201ENST00000263598 CYB5RLQ6IPT4 315 aa16.54■□□□□ 0.24
LCN1-201ENST00000263598 TARBP1Q13395 1621 aaKnown RBP16.54■□□□□ 0.24
LCN1-201ENST00000263598 FBLN2P98095 1184 aa16.53■□□□□ 0.24
LCN1-201ENST00000263598 POLA1P09884 1462 aaPredicted RBP16.52■□□□□ 0.23
LCN1-201ENST00000263598 CHD1O14646 1710 aa16.49■□□□□ 0.23
LCN1-201ENST00000263598 SOGA1O94964 1423 aa16.47■□□□□ 0.23
LCN1-201ENST00000263598 RAD54L2Q9Y4B4 1467 aa16.45■□□□□ 0.22
LCN1-201ENST00000263598 TDRD9Q8NDG6 1382 aaKnown RBP16.44■□□□□ 0.22
LCN1-201ENST00000263598 ARAP1Q96P48 1450 aa16.43■□□□□ 0.22
LCN1-201ENST00000263598 TRHP20396 242 aaPredicted RBP16.43■□□□□ 0.22
LCN1-201ENST00000263598 WDR97A6NE52 1622 aa16.4■□□□□ 0.22
LCN1-201ENST00000263598 FGD5Q6ZNL6 1462 aa16.4■□□□□ 0.22
LCN1-201ENST00000263598 SNAPC4Q5SXM2 1469 aa16.39■□□□□ 0.21
LCN1-201ENST00000263598 CHMP7Q8WUX9 453 aaPredicted RBP16.38■□□□□ 0.21
LCN1-201ENST00000263598 MAGI1Q96QZ7 1491 aaPredicted RBP16.35■□□□□ 0.21
LCN1-201ENST00000263598 GRIN2BQ13224 1484 aa16.34■□□□□ 0.21
LCN1-201ENST00000263598 CUX1P39880 1505 aa16.34■□□□□ 0.21
LCN1-201ENST00000263598 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
LCN1-201ENST00000263598 CLASP1Q7Z460 1538 aa16.33■□□□□ 0.2
LCN1-201ENST00000263598 SYNJ2O15056 1496 aa16.3■□□□□ 0.2
LCN1-201ENST00000263598 GAPVD1Q14C86 1478 aa16.25■□□□□ 0.19
LCN1-201ENST00000263598 PBRM1Q86U86 1689 aa16.21■□□□□ 0.19
LCN1-201ENST00000263598 ABCA10Q8WWZ4 1543 aa16.21■□□□□ 0.19
LCN1-201ENST00000263598 ABCA5Q8WWZ7 1642 aa16.17■□□□□ 0.18
LCN1-201ENST00000263598 WRNQ14191 1432 aaPredicted RBP eCLIP16.14■□□□□ 0.17
LCN1-201ENST00000263598 SUPT5HO00267 1087 aaKnown RBP16.14■□□□□ 0.17
LCN1-201ENST00000263598 GRIN2AQ12879 1464 aa16.12■□□□□ 0.17
LCN1-201ENST00000263598 AEBP2Q6ZN18 517 aaPredicted RBP16.08■□□□□ 0.16
LCN1-201ENST00000263598 ADAMTS12P58397 1594 aa16.06■□□□□ 0.16
LCN1-201ENST00000263598 NUP160Q12769 1436 aa16.06■□□□□ 0.16
LCN1-201ENST00000263598 FHAD1B1AJZ9 1412 aa16.05■□□□□ 0.16
LCN1-201ENST00000263598 TOP2BQ02880 1626 aa16.05■□□□□ 0.16
LCN1-201ENST00000263598 CEP170Q5SW79 1584 aa16.04■□□□□ 0.16
LCN1-201ENST00000263598 ERCC6L2Q5T890 1561 aa16.04■□□□□ 0.16
LCN1-201ENST00000263598 BIVM-ERCC5R4GMW8 1640 aa16.03■□□□□ 0.16
LCN1-201ENST00000263598 ERICH3Q5RHP9 1530 aa16.01■□□□□ 0.15
LCN1-201ENST00000263598 SHROOM2Q13796 1616 aa15.98■□□□□ 0.15
LCN1-201ENST00000263598 PRG4Q92954 1404 aaPredicted RBP15.94■□□□□ 0.14
LCN1-201ENST00000263598 JPH4Q96JJ6 628 aa15.93■□□□□ 0.14
LCN1-201ENST00000263598 NPM1P06748 294 aaKnown RBP eCLIP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms