RNA–Protein interactions for RNA: ENST00000262018.7

SGCA-201, Transcript of sarcoglycan alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGCA, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-201ENST00000262018 NISCHQ9Y2I1 1504 aa33.19■■■□□ 2.9
SGCA-201ENST00000262018 ABCC9O60706 1549 aa30.94■■■□□ 2.54
SGCA-201ENST00000262018 CCDC180Q9P1Z9 1646 aa30.07■■■□□ 2.4
SGCA-201ENST00000262018 DNAJC5BQ9UF47 199 aa29.73■■■□□ 2.35
SGCA-201ENST00000262018 RB1CC1Q8TDY2 1594 aa29.04■■■□□ 2.24
SGCA-201ENST00000262018 PABPN1Q86U42 306 aaKnown RBP eCLIP28.73■■■□□ 2.19
SGCA-201ENST00000262018 NACADO15069 1562 aa28.64■■■□□ 2.18
SGCA-201ENST00000262018 DCAF8L2P0C7V8 631 aa28.5■■■□□ 2.15
SGCA-201ENST00000262018 UNC13AQ9UPW8 1703 aa28.34■■■□□ 2.13
SGCA-201ENST00000262018 BICRAQ9NZM4 1560 aa28.22■■■□□ 2.11
SGCA-201ENST00000262018 MYO15BQ96JP2 1530 aa27.96■■■□□ 2.07
SGCA-201ENST00000262018 CECR2Q9BXF3 1484 aa27.94■■■□□ 2.06
SGCA-201ENST00000262018 CC2D2AQ9P2K1 1620 aa27.86■■■□□ 2.05
SGCA-201ENST00000262018 DNAJC5Q9H3Z4 198 aa27.85■■■□□ 2.05
SGCA-201ENST00000262018 SHROOM4Q9ULL8 1493 aa27.72■■■□□ 2.03
SGCA-201ENST00000262018 EIF4G1Q04637 1599 aaKnown RBP27.6■■■□□ 2.01
SGCA-201ENST00000262018 SCRIBQ14160 1630 aa27.43■■□□□ 1.98
SGCA-201ENST00000262018 ZCCHC6Q5VYS8 1495 aaKnown RBP27.32■■□□□ 1.96
SGCA-201ENST00000262018 DCAF1Q9Y4B6 1507 aa27.32■■□□□ 1.96
SGCA-201ENST00000262018 CUX2O14529 1486 aa26.93■■□□□ 1.9
SGCA-201ENST00000262018 ERCC6Q03468 1493 aa26.77■■□□□ 1.88
SGCA-201ENST00000262018 NCAPD3P42695 1498 aa26.47■■□□□ 1.83
SGCA-201ENST00000262018 TRIM41Q8WV44 630 aa26.39■■□□□ 1.81
SGCA-201ENST00000262018 NESP48681 1621 aa26.35■■□□□ 1.81
SGCA-201ENST00000262018 ATAD2BQ9ULI0 1458 aa26.3■■□□□ 1.8
SGCA-201ENST00000262018 THOC2Q8NI27 1593 aaKnown RBP26.18■■□□□ 1.78
SGCA-201ENST00000262018 HMGXB3Q12766 1538 aa26.17■■□□□ 1.78
SGCA-201ENST00000262018 SMARCA2P51531 1590 aa26.15■■□□□ 1.78
SGCA-201ENST00000262018 SMARCA4P51532 1647 aa26.05■■□□□ 1.76
SGCA-201ENST00000262018 BAZ1BQ9UIG0 1483 aaKnown RBP26.01■■□□□ 1.75
SGCA-201ENST00000262018 LAMC3Q9Y6N6 1575 aa25.97■■□□□ 1.75
SGCA-201ENST00000262018 KIF21AQ7Z4S6 1674 aa25.92■■□□□ 1.74
SGCA-201ENST00000262018 PDS5BQ9NTI5 1447 aa25.9■■□□□ 1.74
SGCA-201ENST00000262018 BAZ1AQ9NRL2 1556 aaPredicted RBP25.81■■□□□ 1.72
SGCA-201ENST00000262018 PEG3Q9GZU2 1588 aa25.76■■□□□ 1.71
SGCA-201ENST00000262018 MRC2Q9UBG0 1479 aa25.72■■□□□ 1.71
SGCA-201ENST00000262018 CADPSQ9ULU8 1353 aa25.65■■□□□ 1.7
SGCA-201ENST00000262018 WDR62O43379 1518 aa25.64■■□□□ 1.7
SGCA-201ENST00000262018 OSCARQ8IYS5 282 aa25.63■■□□□ 1.69
SGCA-201ENST00000262018 MROH2BQ7Z745 1585 aa25.59■■□□□ 1.69
SGCA-201ENST00000262018 CEP164Q9UPV0 1460 aa25.46■■□□□ 1.67
SGCA-201ENST00000262018 FANCD2Q9BXW9 1451 aa25.37■■□□□ 1.65
SGCA-201ENST00000262018 RIMBP3CA6NJZ7 1639 aa25.34■■□□□ 1.65
SGCA-201ENST00000262018 RIMBP3BA6NNM3 1639 aa25.34■■□□□ 1.65
SGCA-201ENST00000262018 RIMBP3Q9UFD9 1639 aa25.34■■□□□ 1.65
SGCA-201ENST00000262018 WIZO95785 1651 aa25.23■■□□□ 1.63
SGCA-201ENST00000262018 URB2Q14146 1524 aaKnown RBP25.2■■□□□ 1.62
SGCA-201ENST00000262018 ARHGEF11O15085 1522 aa25.19■■□□□ 1.62
SGCA-201ENST00000262018 CFTRP13569 1480 aa25.17■■□□□ 1.62
SGCA-201ENST00000262018 TRHP20396 242 aaPredicted RBP25.12■■□□□ 1.61
SGCA-201ENST00000262018 CYB5RLQ6IPT4 315 aa25.12■■□□□ 1.61
SGCA-201ENST00000262018 ZNF608Q9ULD9 1512 aaPredicted RBP25.04■■□□□ 1.6
SGCA-201ENST00000262018 IFT140Q96RY7 1462 aa24.97■■□□□ 1.59
SGCA-201ENST00000262018 AEBP2Q6ZN18 517 aaPredicted RBP24.96■■□□□ 1.59
SGCA-201ENST00000262018 ARAP1Q96P48 1450 aa24.9■■□□□ 1.58
SGCA-201ENST00000262018 TOP2AP11388 1531 aaKnown RBP24.85■■□□□ 1.57
SGCA-201ENST00000262018 EIF4G3O43432 1585 aaKnown RBP24.81■■□□□ 1.56
SGCA-201ENST00000262018 TOPBP1Q92547 1522 aa24.79■■□□□ 1.56
SGCA-201ENST00000262018 FBLN2P98095 1184 aa24.78■■□□□ 1.56
SGCA-201ENST00000262018 PRDM2Q13029 1718 aa24.78■■□□□ 1.56
SGCA-201ENST00000262018 RSF1Q96T23 1441 aaPredicted RBP24.78■■□□□ 1.56
SGCA-201ENST00000262018 CHD1O14646 1710 aa24.77■■□□□ 1.56
SGCA-201ENST00000262018 AQRO60306 1485 aaKnown RBP eCLIP24.73■■□□□ 1.55
SGCA-201ENST00000262018 ABCC8Q09428 1581 aa24.66■■□□□ 1.54
SGCA-201ENST00000262018 DNMBPQ6XZF7 1577 aa24.61■■□□□ 1.53
SGCA-201ENST00000262018 CCDC88BA6NC98 1476 aa24.6■■□□□ 1.53
SGCA-201ENST00000262018 TARBP1Q13395 1621 aaKnown RBP24.6■■□□□ 1.53
SGCA-201ENST00000262018 POLA1P09884 1462 aaPredicted RBP24.49■■□□□ 1.51
SGCA-201ENST00000262018 CLASP1Q7Z460 1538 aa24.47■■□□□ 1.51
SGCA-201ENST00000262018 TDRD9Q8NDG6 1382 aaKnown RBP24.47■■□□□ 1.51
SGCA-201ENST00000262018 RAD54L2Q9Y4B4 1467 aa24.45■■□□□ 1.5
SGCA-201ENST00000262018 CHMP7Q8WUX9 453 aaPredicted RBP24.44■■□□□ 1.5
SGCA-201ENST00000262018 SNAPC4Q5SXM2 1469 aa24.43■■□□□ 1.5
SGCA-201ENST00000262018 SYNJ1O43426 1573 aa24.4■■□□□ 1.5
SGCA-201ENST00000262018 SOGA1O94964 1423 aa24.39■■□□□ 1.5
SGCA-201ENST00000262018 GAPVD1Q14C86 1478 aa24.32■■□□□ 1.48
SGCA-201ENST00000262018 MAGI1Q96QZ7 1491 aaPredicted RBP24.31■■□□□ 1.48
SGCA-201ENST00000262018 WDR97A6NE52 1622 aa24.25■■□□□ 1.47
SGCA-201ENST00000262018 GRIN2BQ13224 1484 aa24.25■■□□□ 1.47
SGCA-201ENST00000262018 SYNJ2O15056 1496 aa24.25■■□□□ 1.47
SGCA-201ENST00000262018 FGD5Q6ZNL6 1462 aa24.24■■□□□ 1.47
SGCA-201ENST00000262018 CUX1P39880 1505 aa24.08■■□□□ 1.45
SGCA-201ENST00000262018 ERCC6L2Q5T890 1561 aa24.08■■□□□ 1.44
SGCA-201ENST00000262018 PBRM1Q86U86 1689 aa24.06■■□□□ 1.44
SGCA-201ENST00000262018 CEP170Q5SW79 1584 aa23.95■■□□□ 1.42
SGCA-201ENST00000262018 ILDR1Q86SU0 546 aaPredicted RBP23.94■■□□□ 1.42
SGCA-201ENST00000262018 KIF13AQ9H1H9 1805 aa23.93■■□□□ 1.42
SGCA-201ENST00000262018 GRIN2AQ12879 1464 aa23.93■■□□□ 1.42
SGCA-201ENST00000262018 ABCA5Q8WWZ7 1642 aa23.9■■□□□ 1.42
SGCA-201ENST00000262018 ABCA10Q8WWZ4 1543 aa23.89■■□□□ 1.41
SGCA-201ENST00000262018 NUP160Q12769 1436 aa23.86■■□□□ 1.41
SGCA-201ENST00000262018 KDM4FA0A1W2PPD8 638 aa23.84■■□□□ 1.41
SGCA-201ENST00000262018 FAM69CQ0P6D2 419 aa23.84■■□□□ 1.41
SGCA-201ENST00000262018 SHROOM2Q13796 1616 aa23.82■■□□□ 1.4
SGCA-201ENST00000262018 ADAMTS12P58397 1594 aa23.79■■□□□ 1.4
SGCA-201ENST00000262018 ABCC10Q5T3U5 1492 aa23.76■■□□□ 1.39
SGCA-201ENST00000262018 PRG4Q92954 1404 aaPredicted RBP23.74■■□□□ 1.39
SGCA-201ENST00000262018 FHAD1B1AJZ9 1412 aa23.73■■□□□ 1.39
SGCA-201ENST00000262018 NPM1P06748 294 aaKnown RBP eCLIP23.73■■□□□ 1.39
SGCA-201ENST00000262018 KDM6BO15054 1643 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms